data_5QT0 # _model_server_result.job_id hXpbzaWiu1j9wiFJHZOVTg _model_server_result.datetime_utc '2024-11-05 00:26:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 5QT0 # _exptl.entry_id 5QT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.261 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-(4-methoxyphenyl)-N'-pyridin-4-ylurea" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QT0 _cell.length_a 99.93 _cell.length_b 99.93 _cell.length_c 98.02 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N3 O2' _chem_comp.formula_weight 243.261 _chem_comp.id JHJ _chem_comp.mon_nstd_flag . _chem_comp.name "N-(4-methoxyphenyl)-N'-pyridin-4-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 JHJ doub 173 n y C18 C13 JHJ sing 174 n y C17 N16 JHJ sing 175 n y N16 C15 JHJ doub 176 n y N12 C13 JHJ sing 177 n n N12 C10 JHJ sing 178 n n C13 C14 JHJ doub 179 n y N09 C10 JHJ sing 180 n n N09 C06 JHJ sing 181 n n C05 C06 JHJ doub 182 n y C05 C04 JHJ sing 183 n y C10 O11 JHJ doub 184 n n C15 C14 JHJ sing 185 n y C06 C07 JHJ sing 186 n y C04 C03 JHJ doub 187 n y C07 C08 JHJ doub 188 n y C03 C08 JHJ sing 189 n y C03 O02 JHJ sing 190 n n C01 O02 JHJ sing 191 n n N12 H121 JHJ sing 192 n n C15 H151 JHJ sing 193 n n C17 H171 JHJ sing 194 n n C01 H013 JHJ sing 195 n n C01 H012 JHJ sing 196 n n C01 H011 JHJ sing 197 n n C04 H041 JHJ sing 198 n n C05 H051 JHJ sing 199 n n C07 H071 JHJ sing 200 n n C08 H081 JHJ sing 201 n n C14 H141 JHJ sing 202 n n C18 H181 JHJ sing 203 n n N09 H091 JHJ sing 204 n n # _atom_sites.entry_id 5QT0 _atom_sites.fract_transf_matrix[1][1] 0.010007 _atom_sites.fract_transf_matrix[1][2] 0.005778 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010202 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JHJ A 1 301 301 JHJ LIG . C 3 HOH A 1 401 166 HOH HOH . C 3 HOH A 2 402 187 HOH HOH . C 3 HOH A 3 403 220 HOH HOH . C 3 HOH A 4 404 105 HOH HOH . C 3 HOH A 5 405 77 HOH HOH . C 3 HOH A 6 406 183 HOH HOH . C 3 HOH A 7 407 162 HOH HOH . C 3 HOH A 8 408 198 HOH HOH . C 3 HOH A 9 409 228 HOH HOH . C 3 HOH A 10 410 16 HOH HOH . C 3 HOH A 11 411 171 HOH HOH . C 3 HOH A 12 412 30 HOH HOH . C 3 HOH A 13 413 149 HOH HOH . C 3 HOH A 14 414 27 HOH HOH . C 3 HOH A 15 415 157 HOH HOH . C 3 HOH A 16 416 123 HOH HOH . C 3 HOH A 17 417 97 HOH HOH . C 3 HOH A 18 418 106 HOH HOH . C 3 HOH A 19 419 92 HOH HOH . C 3 HOH A 20 420 45 HOH HOH . C 3 HOH A 21 421 41 HOH HOH . C 3 HOH A 22 422 90 HOH HOH . C 3 HOH A 23 423 12 HOH HOH . C 3 HOH A 24 424 76 HOH HOH . C 3 HOH A 25 425 133 HOH HOH . C 3 HOH A 26 426 94 HOH HOH . C 3 HOH A 27 427 78 HOH HOH . C 3 HOH A 28 428 118 HOH HOH . C 3 HOH A 29 429 159 HOH HOH . C 3 HOH A 30 430 104 HOH HOH . C 3 HOH A 31 431 113 HOH HOH . C 3 HOH A 32 432 37 HOH HOH . C 3 HOH A 33 433 23 HOH HOH . C 3 HOH A 34 434 174 HOH HOH . C 3 HOH A 35 435 31 HOH HOH . C 3 HOH A 36 436 9 HOH HOH . C 3 HOH A 37 437 136 HOH HOH . C 3 HOH A 38 438 167 HOH HOH . C 3 HOH A 39 439 46 HOH HOH . C 3 HOH A 40 440 14 HOH HOH . C 3 HOH A 41 441 36 HOH HOH . C 3 HOH A 42 442 152 HOH HOH . C 3 HOH A 43 443 233 HOH HOH . C 3 HOH A 44 444 225 HOH HOH . C 3 HOH A 45 445 107 HOH HOH . C 3 HOH A 46 446 62 HOH HOH . C 3 HOH A 47 447 42 HOH HOH . C 3 HOH A 48 448 32 HOH HOH . C 3 HOH A 49 449 202 HOH HOH . C 3 HOH A 50 450 3 HOH HOH . C 3 HOH A 51 451 47 HOH HOH . C 3 HOH A 52 452 188 HOH HOH . C 3 HOH A 53 453 57 HOH HOH . C 3 HOH A 54 454 17 HOH HOH . C 3 HOH A 55 455 189 HOH HOH . C 3 HOH A 56 456 212 HOH HOH . C 3 HOH A 57 457 232 HOH HOH . C 3 HOH A 58 458 207 HOH HOH . C 3 HOH A 59 459 22 HOH HOH . C 3 HOH A 60 460 25 HOH HOH . C 3 HOH A 61 461 44 HOH HOH . C 3 HOH A 62 462 8 HOH HOH . C 3 HOH A 63 463 96 HOH HOH . C 3 HOH A 64 464 5 HOH HOH . C 3 HOH A 65 465 26 HOH HOH . C 3 HOH A 66 466 191 HOH HOH . C 3 HOH A 67 467 69 HOH HOH . C 3 HOH A 68 468 195 HOH HOH . C 3 HOH A 69 469 48 HOH HOH . C 3 HOH A 70 470 190 HOH HOH . C 3 HOH A 71 471 70 HOH HOH . C 3 HOH A 72 472 35 HOH HOH . C 3 HOH A 73 473 28 HOH HOH . C 3 HOH A 74 474 109 HOH HOH . C 3 HOH A 75 475 151 HOH HOH . C 3 HOH A 76 476 150 HOH HOH . C 3 HOH A 77 477 4 HOH HOH . C 3 HOH A 78 478 89 HOH HOH . C 3 HOH A 79 479 101 HOH HOH . C 3 HOH A 80 480 50 HOH HOH . C 3 HOH A 81 481 6 HOH HOH . C 3 HOH A 82 482 88 HOH HOH . C 3 HOH A 83 483 194 HOH HOH . C 3 HOH A 84 484 154 HOH HOH . C 3 HOH A 85 485 124 HOH HOH . C 3 HOH A 86 486 67 HOH HOH . C 3 HOH A 87 487 58 HOH HOH . C 3 HOH A 88 488 93 HOH HOH . C 3 HOH A 89 489 1 HOH HOH . C 3 HOH A 90 490 51 HOH HOH . C 3 HOH A 91 491 170 HOH HOH . C 3 HOH A 92 492 141 HOH HOH . C 3 HOH A 93 493 160 HOH HOH . C 3 HOH A 94 494 111 HOH HOH . C 3 HOH A 95 495 60 HOH HOH . C 3 HOH A 96 496 40 HOH HOH . C 3 HOH A 97 497 59 HOH HOH . C 3 HOH A 98 498 224 HOH HOH . C 3 HOH A 99 499 227 HOH HOH . C 3 HOH A 100 500 204 HOH HOH . C 3 HOH A 101 501 39 HOH HOH . C 3 HOH A 102 502 95 HOH HOH . C 3 HOH A 103 503 15 HOH HOH . C 3 HOH A 104 504 234 HOH HOH . C 3 HOH A 105 505 68 HOH HOH . C 3 HOH A 106 506 169 HOH HOH . C 3 HOH A 107 507 72 HOH HOH . C 3 HOH A 108 508 33 HOH HOH . C 3 HOH A 109 509 38 HOH HOH . C 3 HOH A 110 510 176 HOH HOH . C 3 HOH A 111 511 87 HOH HOH . C 3 HOH A 112 512 80 HOH HOH . C 3 HOH A 113 513 81 HOH HOH . C 3 HOH A 114 514 53 HOH HOH . C 3 HOH A 115 515 164 HOH HOH . C 3 HOH A 116 516 54 HOH HOH . C 3 HOH A 117 517 175 HOH HOH . C 3 HOH A 118 518 43 HOH HOH . C 3 HOH A 119 519 180 HOH HOH . C 3 HOH A 120 520 186 HOH HOH . C 3 HOH A 121 521 226 HOH HOH . C 3 HOH A 122 522 199 HOH HOH . C 3 HOH A 123 523 13 HOH HOH . C 3 HOH A 124 524 108 HOH HOH . C 3 HOH A 125 525 158 HOH HOH . C 3 HOH A 126 526 66 HOH HOH . C 3 HOH A 127 527 168 HOH HOH . C 3 HOH A 128 528 114 HOH HOH . C 3 HOH A 129 529 103 HOH HOH . C 3 HOH A 130 530 24 HOH HOH . C 3 HOH A 131 531 61 HOH HOH . C 3 HOH A 132 532 135 HOH HOH . C 3 HOH A 133 533 182 HOH HOH . C 3 HOH A 134 534 209 HOH HOH . C 3 HOH A 135 535 20 HOH HOH . C 3 HOH A 136 536 231 HOH HOH . C 3 HOH A 137 537 181 HOH HOH . C 3 HOH A 138 538 125 HOH HOH . C 3 HOH A 139 539 122 HOH HOH . C 3 HOH A 140 540 11 HOH HOH . C 3 HOH A 141 541 100 HOH HOH . C 3 HOH A 142 542 64 HOH HOH . C 3 HOH A 143 543 223 HOH HOH . C 3 HOH A 144 544 138 HOH HOH . C 3 HOH A 145 545 99 HOH HOH . C 3 HOH A 146 546 185 HOH HOH . C 3 HOH A 147 547 163 HOH HOH . C 3 HOH A 148 548 165 HOH HOH . C 3 HOH A 149 549 82 HOH HOH . C 3 HOH A 150 550 196 HOH HOH . C 3 HOH A 151 551 2 HOH HOH . C 3 HOH A 152 552 83 HOH HOH . C 3 HOH A 153 553 161 HOH HOH . C 3 HOH A 154 554 117 HOH HOH . C 3 HOH A 155 555 86 HOH HOH . C 3 HOH A 156 556 74 HOH HOH . C 3 HOH A 157 557 184 HOH HOH . C 3 HOH A 158 558 208 HOH HOH . C 3 HOH A 159 559 7 HOH HOH . C 3 HOH A 160 560 127 HOH HOH . C 3 HOH A 161 561 56 HOH HOH . C 3 HOH A 162 562 85 HOH HOH . C 3 HOH A 163 563 229 HOH HOH . C 3 HOH A 164 564 178 HOH HOH . C 3 HOH A 165 565 29 HOH HOH . C 3 HOH A 166 566 213 HOH HOH . C 3 HOH A 167 567 179 HOH HOH . C 3 HOH A 168 568 144 HOH HOH . C 3 HOH A 169 569 119 HOH HOH . C 3 HOH A 170 570 121 HOH HOH . C 3 HOH A 171 571 52 HOH HOH . C 3 HOH A 172 572 201 HOH HOH . C 3 HOH A 173 573 214 HOH HOH . C 3 HOH A 174 574 84 HOH HOH . C 3 HOH A 175 575 221 HOH HOH . C 3 HOH A 176 576 218 HOH HOH . C 3 HOH A 177 577 143 HOH HOH . C 3 HOH A 178 578 216 HOH HOH . C 3 HOH A 179 579 19 HOH HOH . C 3 HOH A 180 580 193 HOH HOH . C 3 HOH A 181 581 139 HOH HOH . C 3 HOH A 182 582 215 HOH HOH . C 3 HOH A 183 583 98 HOH HOH . C 3 HOH A 184 584 131 HOH HOH . C 3 HOH A 185 585 173 HOH HOH . C 3 HOH A 186 586 21 HOH HOH . C 3 HOH A 187 587 200 HOH HOH . C 3 HOH A 188 588 205 HOH HOH . C 3 HOH A 189 589 197 HOH HOH . C 3 HOH A 190 590 116 HOH HOH . C 3 HOH A 191 591 102 HOH HOH . C 3 HOH A 192 592 222 HOH HOH . C 3 HOH A 193 593 206 HOH HOH . C 3 HOH A 194 594 156 HOH HOH . C 3 HOH A 195 595 129 HOH HOH . C 3 HOH A 196 596 219 HOH HOH . C 3 HOH A 197 597 49 HOH HOH . C 3 HOH A 198 598 132 HOH HOH . C 3 HOH A 199 599 120 HOH HOH . C 3 HOH A 200 600 210 HOH HOH . C 3 HOH A 201 601 55 HOH HOH . C 3 HOH A 202 602 126 HOH HOH . C 3 HOH A 203 603 65 HOH HOH . C 3 HOH A 204 604 142 HOH HOH . C 3 HOH A 205 605 172 HOH HOH . C 3 HOH A 206 606 155 HOH HOH . C 3 HOH A 207 607 79 HOH HOH . C 3 HOH A 208 608 71 HOH HOH . C 3 HOH A 209 609 75 HOH HOH . C 3 HOH A 210 610 130 HOH HOH . C 3 HOH A 211 611 112 HOH HOH . C 3 HOH A 212 612 230 HOH HOH . C 3 HOH A 213 613 110 HOH HOH . C 3 HOH A 214 614 91 HOH HOH . C 3 HOH A 215 615 217 HOH HOH . C 3 HOH A 216 616 140 HOH HOH . C 3 HOH A 217 617 73 HOH HOH . C 3 HOH A 218 618 137 HOH HOH . C 3 HOH A 219 619 153 HOH HOH . C 3 HOH A 220 620 128 HOH HOH . C 3 HOH A 221 621 134 HOH HOH . C 3 HOH A 222 622 63 HOH HOH . C 3 HOH A 223 623 148 HOH HOH . C 3 HOH A 224 624 147 HOH HOH . C 3 HOH A 225 625 211 HOH HOH . C 3 HOH A 226 626 203 HOH HOH . C 3 HOH A 227 627 115 HOH HOH . C 3 HOH A 228 628 145 HOH HOH . C 3 HOH A 229 629 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 JHJ . . . B 2 -17.156 -29.877 -0.095 0.4 96.76 ? C10 JHJ 301 A 1 HETATM 2 N N12 JHJ . . . B 2 -16.593 -29.36 -1.272 0.4 95.36 ? N12 JHJ 301 A 1 HETATM 3 C C13 JHJ . . . B 2 -16.713 -29.979 -2.505 0.4 90.84 ? C13 JHJ 301 A 1 HETATM 4 C C15 JHJ . . . B 2 -17.089 -31.819 -3.939 0.4 87.36 ? C15 JHJ 301 A 1 HETATM 5 C C17 JHJ . . . B 2 -16.765 -29.775 -4.876 0.4 88.62 ? C17 JHJ 301 A 1 HETATM 6 C C01 JHJ . . . B 2 -17.663 -30.579 6.94 0.4 94.85 ? C01 JHJ 301 A 1 HETATM 7 C C03 JHJ . . . B 2 -18.342 -30.09 4.774 0.4 98.88 ? C03 JHJ 301 A 1 HETATM 8 C C04 JHJ . . . B 2 -19.005 -30.591 3.662 0.4 100.63 ? C04 JHJ 301 A 1 HETATM 9 C C05 JHJ . . . B 2 -18.581 -30.223 2.406 0.4 103.79 ? C05 JHJ 301 A 1 HETATM 10 C C06 JHJ . . . B 2 -17.504 -29.362 2.279 0.4 104.97 ? C06 JHJ 301 A 1 HETATM 11 C C07 JHJ . . . B 2 -16.869 -28.87 3.397 0.4 102.92 ? C07 JHJ 301 A 1 HETATM 12 C C08 JHJ . . . B 2 -17.287 -29.24 4.649 0.4 100.01 ? C08 JHJ 301 A 1 HETATM 13 C C14 JHJ . . . B 2 -16.953 -31.33 -2.651 0.4 89.1 ? C14 JHJ 301 A 1 HETATM 14 C C18 JHJ . . . B 2 -16.611 -29.189 -3.638 0.4 89.99 ? C18 JHJ 301 A 1 HETATM 15 N N09 JHJ . . . B 2 -17.038 -29.04 1.001 0.4 104.39 ? N09 JHJ 301 A 1 HETATM 16 N N16 JHJ . . . B 2 -17.004 -31.074 -5.056 0.4 87.26 ? N16 JHJ 301 A 1 HETATM 17 O O02 JHJ . . . B 2 -18.724 -30.419 6.044 0.4 96.29 ? O02 JHJ 301 A 1 HETATM 18 O O11 JHJ . . . B 2 -17.703 -30.945 -0.048 0.4 97.05 ? O11 JHJ 301 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 18 #