data_5QT3
#
_model_server_result.job_id            3ceqBgIQAmR66M-TgeO3rQ 
_model_server_result.datetime_utc      '2024-11-16 18:34:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qt3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    5QT3 
#
_exptl.entry_id    5QT3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.21 
_cell.angle_gamma         90 
_cell.entry_id            5QT3 
_cell.length_a            125.16 
_cell.length_b            108 
_cell.length_c            75.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QT3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     5QT3 
_atom_sites.fract_transf_matrix[1][1]    0.00799 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002784 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009259 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014004 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP B 1 601 601 PLP PLP . 
D 2 PLP A 1 601 601 PLP PLP . 
E 3 HOH B 1 701 702 HOH HOH . 
E 3 HOH B 2 702 701 HOH HOH . 
E 3 HOH B 3 703 799 HOH HOH . 
E 3 HOH B 4 704 712 HOH HOH . 
E 3 HOH B 5 705 827 HOH HOH . 
E 3 HOH B 6 706 732 HOH HOH . 
E 3 HOH B 7 707 749 HOH HOH . 
E 3 HOH B 8 708 717 HOH HOH . 
E 3 HOH B 9 709 795 HOH HOH . 
E 3 HOH B 10 710 706 HOH HOH . 
E 3 HOH B 11 711 714 HOH HOH . 
E 3 HOH B 12 712 741 HOH HOH . 
E 3 HOH B 13 713 733 HOH HOH . 
E 3 HOH B 14 714 723 HOH HOH . 
E 3 HOH B 15 715 705 HOH HOH . 
E 3 HOH B 16 716 725 HOH HOH . 
E 3 HOH B 17 717 713 HOH HOH . 
E 3 HOH B 18 718 729 HOH HOH . 
E 3 HOH B 19 719 710 HOH HOH . 
E 3 HOH B 20 720 787 HOH HOH . 
E 3 HOH B 21 721 716 HOH HOH . 
E 3 HOH B 22 722 731 HOH HOH . 
E 3 HOH B 23 723 764 HOH HOH . 
E 3 HOH B 24 724 779 HOH HOH . 
E 3 HOH B 25 725 708 HOH HOH . 
E 3 HOH B 26 726 770 HOH HOH . 
E 3 HOH B 27 727 704 HOH HOH . 
E 3 HOH B 28 728 707 HOH HOH . 
E 3 HOH B 29 729 780 HOH HOH . 
E 3 HOH B 30 730 762 HOH HOH . 
E 3 HOH B 31 731 768 HOH HOH . 
E 3 HOH B 32 732 758 HOH HOH . 
E 3 HOH B 33 733 742 HOH HOH . 
E 3 HOH B 34 734 814 HOH HOH . 
E 3 HOH B 35 735 715 HOH HOH . 
E 3 HOH B 36 736 730 HOH HOH . 
E 3 HOH B 37 737 727 HOH HOH . 
E 3 HOH B 38 738 810 HOH HOH . 
E 3 HOH B 39 739 720 HOH HOH . 
E 3 HOH B 40 740 797 HOH HOH . 
E 3 HOH B 41 741 753 HOH HOH . 
E 3 HOH B 42 742 772 HOH HOH . 
E 3 HOH B 43 743 790 HOH HOH . 
E 3 HOH B 44 744 734 HOH HOH . 
E 3 HOH B 45 745 719 HOH HOH . 
E 3 HOH B 46 746 773 HOH HOH . 
E 3 HOH B 47 747 769 HOH HOH . 
E 3 HOH B 48 748 806 HOH HOH . 
E 3 HOH B 49 749 755 HOH HOH . 
E 3 HOH B 50 750 718 HOH HOH . 
E 3 HOH B 51 751 709 HOH HOH . 
E 3 HOH B 52 752 765 HOH HOH . 
E 3 HOH B 53 753 736 HOH HOH . 
E 3 HOH B 54 754 756 HOH HOH . 
E 3 HOH B 55 755 746 HOH HOH . 
E 3 HOH B 56 756 748 HOH HOH . 
E 3 HOH B 57 757 738 HOH HOH . 
E 3 HOH B 58 758 721 HOH HOH . 
E 3 HOH B 59 759 786 HOH HOH . 
E 3 HOH B 60 760 711 HOH HOH . 
E 3 HOH B 61 761 747 HOH HOH . 
E 3 HOH B 62 762 766 HOH HOH . 
E 3 HOH B 63 763 739 HOH HOH . 
E 3 HOH B 64 764 807 HOH HOH . 
E 3 HOH B 65 765 754 HOH HOH . 
E 3 HOH B 66 766 740 HOH HOH . 
E 3 HOH B 67 767 744 HOH HOH . 
E 3 HOH B 68 768 791 HOH HOH . 
E 3 HOH B 69 769 801 HOH HOH . 
E 3 HOH B 70 770 782 HOH HOH . 
E 3 HOH B 71 771 767 HOH HOH . 
E 3 HOH B 72 772 734 HOH HOH . 
E 3 HOH B 73 773 787 HOH HOH . 
E 3 HOH B 74 774 750 HOH HOH . 
E 3 HOH B 75 775 763 HOH HOH . 
E 3 HOH B 76 776 776 HOH HOH . 
E 3 HOH B 77 777 771 HOH HOH . 
E 3 HOH B 78 778 761 HOH HOH . 
E 3 HOH B 79 779 751 HOH HOH . 
E 3 HOH B 80 780 737 HOH HOH . 
E 3 HOH B 81 781 760 HOH HOH . 
E 3 HOH B 82 782 832 HOH HOH . 
E 3 HOH B 83 783 759 HOH HOH . 
E 3 HOH B 84 784 743 HOH HOH . 
E 3 HOH B 85 785 735 HOH HOH . 
E 3 HOH B 86 786 805 HOH HOH . 
E 3 HOH B 87 787 752 HOH HOH . 
E 3 HOH B 88 788 818 HOH HOH . 
E 3 HOH B 89 789 778 HOH HOH . 
E 3 HOH B 90 790 775 HOH HOH . 
E 3 HOH B 91 791 728 HOH HOH . 
E 3 HOH B 92 792 792 HOH HOH . 
E 3 HOH B 93 793 769 HOH HOH . 
E 3 HOH B 94 794 821 HOH HOH . 
E 3 HOH B 95 795 803 HOH HOH . 
E 3 HOH B 96 796 784 HOH HOH . 
E 3 HOH B 97 797 774 HOH HOH . 
E 3 HOH B 98 798 825 HOH HOH . 
E 3 HOH B 99 799 794 HOH HOH . 
E 3 HOH B 100 800 777 HOH HOH . 
E 3 HOH B 101 801 820 HOH HOH . 
E 3 HOH B 102 802 763 HOH HOH . 
E 3 HOH B 103 803 724 HOH HOH . 
E 3 HOH B 104 804 789 HOH HOH . 
E 3 HOH B 105 805 798 HOH HOH . 
E 3 HOH B 106 806 809 HOH HOH . 
E 3 HOH B 107 807 808 HOH HOH . 
E 3 HOH B 108 808 745 HOH HOH . 
E 3 HOH B 109 809 813 HOH HOH . 
E 3 HOH B 110 810 788 HOH HOH . 
E 3 HOH B 111 811 817 HOH HOH . 
E 3 HOH B 112 812 811 HOH HOH . 
E 3 HOH B 113 813 819 HOH HOH . 
E 3 HOH B 114 814 785 HOH HOH . 
E 3 HOH B 115 815 793 HOH HOH . 
E 3 HOH B 116 816 816 HOH HOH . 
E 3 HOH B 117 817 823 HOH HOH . 
E 3 HOH B 118 818 812 HOH HOH . 
E 3 HOH B 119 819 800 HOH HOH . 
E 3 HOH B 120 820 828 HOH HOH . 
E 3 HOH B 121 821 826 HOH HOH . 
E 3 HOH B 122 822 802 HOH HOH . 
E 3 HOH B 123 823 830 HOH HOH . 
E 3 HOH B 124 824 834 HOH HOH . 
E 3 HOH B 125 825 829 HOH HOH . 
E 3 HOH B 126 826 815 HOH HOH . 
E 3 HOH B 127 827 833 HOH HOH . 
E 3 HOH B 128 828 831 HOH HOH . 
E 3 HOH B 129 829 824 HOH HOH . 
E 3 HOH B 130 830 804 HOH HOH . 
E 3 HOH B 131 831 835 HOH HOH . 
F 3 HOH A 1 701 705 HOH HOH . 
F 3 HOH A 2 702 702 HOH HOH . 
F 3 HOH A 3 703 710 HOH HOH . 
F 3 HOH A 4 704 720 HOH HOH . 
F 3 HOH A 5 705 733 HOH HOH . 
F 3 HOH A 6 706 731 HOH HOH . 
F 3 HOH A 7 707 707 HOH HOH . 
F 3 HOH A 8 708 740 HOH HOH . 
F 3 HOH A 9 709 716 HOH HOH . 
F 3 HOH A 10 710 711 HOH HOH . 
F 3 HOH A 11 711 714 HOH HOH . 
F 3 HOH A 12 712 722 HOH HOH . 
F 3 HOH A 13 713 721 HOH HOH . 
F 3 HOH A 14 714 748 HOH HOH . 
F 3 HOH A 15 715 712 HOH HOH . 
F 3 HOH A 16 716 718 HOH HOH . 
F 3 HOH A 17 717 754 HOH HOH . 
F 3 HOH A 18 718 708 HOH HOH . 
F 3 HOH A 19 719 766 HOH HOH . 
F 3 HOH A 20 720 729 HOH HOH . 
F 3 HOH A 21 721 728 HOH HOH . 
F 3 HOH A 22 722 713 HOH HOH . 
F 3 HOH A 23 723 738 HOH HOH . 
F 3 HOH A 24 724 722 HOH HOH . 
F 3 HOH A 25 725 723 HOH HOH . 
F 3 HOH A 26 726 726 HOH HOH . 
F 3 HOH A 27 727 742 HOH HOH . 
F 3 HOH A 28 728 704 HOH HOH . 
F 3 HOH A 29 729 719 HOH HOH . 
F 3 HOH A 30 730 777 HOH HOH . 
F 3 HOH A 31 731 730 HOH HOH . 
F 3 HOH A 32 732 757 HOH HOH . 
F 3 HOH A 33 733 726 HOH HOH . 
F 3 HOH A 34 734 764 HOH HOH . 
F 3 HOH A 35 735 756 HOH HOH . 
F 3 HOH A 36 736 703 HOH HOH . 
F 3 HOH A 37 737 809 HOH HOH . 
F 3 HOH A 38 738 701 HOH HOH . 
F 3 HOH A 39 739 709 HOH HOH . 
F 3 HOH A 40 740 724 HOH HOH . 
F 3 HOH A 41 741 780 HOH HOH . 
F 3 HOH A 42 742 717 HOH HOH . 
F 3 HOH A 43 743 706 HOH HOH . 
F 3 HOH A 44 744 791 HOH HOH . 
F 3 HOH A 45 745 735 HOH HOH . 
F 3 HOH A 46 746 732 HOH HOH . 
F 3 HOH A 47 747 727 HOH HOH . 
F 3 HOH A 48 748 703 HOH HOH . 
F 3 HOH A 49 749 797 HOH HOH . 
F 3 HOH A 50 750 779 HOH HOH . 
F 3 HOH A 51 751 743 HOH HOH . 
F 3 HOH A 52 752 715 HOH HOH . 
F 3 HOH A 53 753 778 HOH HOH . 
F 3 HOH A 54 754 759 HOH HOH . 
F 3 HOH A 55 755 750 HOH HOH . 
F 3 HOH A 56 756 783 HOH HOH . 
F 3 HOH A 57 757 757 HOH HOH . 
F 3 HOH A 58 758 771 HOH HOH . 
F 3 HOH A 59 759 725 HOH HOH . 
F 3 HOH A 60 760 746 HOH HOH . 
F 3 HOH A 61 761 758 HOH HOH . 
F 3 HOH A 62 762 745 HOH HOH . 
F 3 HOH A 63 763 776 HOH HOH . 
F 3 HOH A 64 764 781 HOH HOH . 
F 3 HOH A 65 765 753 HOH HOH . 
F 3 HOH A 66 766 736 HOH HOH . 
F 3 HOH A 67 767 752 HOH HOH . 
F 3 HOH A 68 768 741 HOH HOH . 
F 3 HOH A 69 769 804 HOH HOH . 
F 3 HOH A 70 770 747 HOH HOH . 
F 3 HOH A 71 771 782 HOH HOH . 
F 3 HOH A 72 772 765 HOH HOH . 
F 3 HOH A 73 773 755 HOH HOH . 
F 3 HOH A 74 774 737 HOH HOH . 
F 3 HOH A 75 775 744 HOH HOH . 
F 3 HOH A 76 776 781 HOH HOH . 
F 3 HOH A 77 777 811 HOH HOH . 
F 3 HOH A 78 778 762 HOH HOH . 
F 3 HOH A 79 779 751 HOH HOH . 
F 3 HOH A 80 780 775 HOH HOH . 
F 3 HOH A 81 781 739 HOH HOH . 
F 3 HOH A 82 782 793 HOH HOH . 
F 3 HOH A 83 783 784 HOH HOH . 
F 3 HOH A 84 784 796 HOH HOH . 
F 3 HOH A 85 785 767 HOH HOH . 
F 3 HOH A 86 786 768 HOH HOH . 
F 3 HOH A 87 787 790 HOH HOH . 
F 3 HOH A 88 788 796 HOH HOH . 
F 3 HOH A 89 789 800 HOH HOH . 
F 3 HOH A 90 790 761 HOH HOH . 
F 3 HOH A 91 791 795 HOH HOH . 
F 3 HOH A 92 792 786 HOH HOH . 
F 3 HOH A 93 793 772 HOH HOH . 
F 3 HOH A 94 794 770 HOH HOH . 
F 3 HOH A 95 795 802 HOH HOH . 
F 3 HOH A 96 796 749 HOH HOH . 
F 3 HOH A 97 797 798 HOH HOH . 
F 3 HOH A 98 798 774 HOH HOH . 
F 3 HOH A 99 799 789 HOH HOH . 
F 3 HOH A 100 800 810 HOH HOH . 
F 3 HOH A 101 801 788 HOH HOH . 
F 3 HOH A 102 802 792 HOH HOH . 
F 3 HOH A 103 803 773 HOH HOH . 
F 3 HOH A 104 804 783 HOH HOH . 
F 3 HOH A 105 805 760 HOH HOH . 
F 3 HOH A 106 806 807 HOH HOH . 
F 3 HOH A 107 807 822 HOH HOH . 
F 3 HOH A 108 808 785 HOH HOH . 
F 3 HOH A 109 809 801 HOH HOH . 
F 3 HOH A 110 810 799 HOH HOH . 
F 3 HOH A 111 811 806 HOH HOH . 
F 3 HOH A 112 812 794 HOH HOH . 
F 3 HOH A 113 813 808 HOH HOH . 
F 3 HOH A 114 814 805 HOH HOH . 
F 3 HOH A 115 815 803 HOH HOH . 
F 3 HOH A 116 816 812 HOH HOH . 
F 3 HOH A 117 817 836 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . C 2 28.475 -31.673 -0.036 1 37.17 ? N1 PLP 601 B 1 
HETATM 2 C C2 PLP . . . C 2 29.451 -31.96 -0.904 1 39.5 ? C2 PLP 601 B 1 
HETATM 3 C C2A PLP . . . C 2 29.136 -32.848 -2.063 1 38.73 ? C2A PLP 601 B 1 
HETATM 4 C C3 PLP . . . C 2 30.763 -31.456 -0.718 1 37.94 ? C3 PLP 601 B 1 
HETATM 5 O O3 PLP . . . C 2 31.74 -31.794 -1.593 1 34.73 ? O3 PLP 601 B 1 
HETATM 6 C C4 PLP . . . C 2 31.063 -30.643 0.387 1 36.69 ? C4 PLP 601 B 1 
HETATM 7 C C4A PLP . . . C 2 32.465 -30.183 0.502 1 43.8 ? C4A PLP 601 B 1 
HETATM 8 O O4A PLP . . . C 2 32.885 -29.144 0.965 1 47.06 ? O4A PLP 601 B 1 
HETATM 9 C C5 PLP . . . C 2 30.01 -30.356 1.273 1 36.6 ? C5 PLP 601 B 1 
HETATM 10 C C6 PLP . . . C 2 28.766 -30.89 1.028 1 37.94 ? C6 PLP 601 B 1 
HETATM 11 C C5A PLP . . . C 2 30.184 -29.455 2.466 1 35.59 ? C5A PLP 601 B 1 
HETATM 12 O O4P PLP . . . C 2 29.952 -28.052 2.092 1 31.48 ? O4P PLP 601 B 1 
HETATM 13 P P PLP . . . C 2 30.807 -26.946 2.906 1 39.48 ? P PLP 601 B 1 
HETATM 14 O O1P PLP . . . C 2 32.253 -26.859 2.326 1 36.53 ? O1P PLP 601 B 1 
HETATM 15 O O2P PLP . . . C 2 30.888 -27.453 4.356 1 37.34 ? O2P PLP 601 B 1 
HETATM 16 O O3P PLP . . . C 2 30.027 -25.63 2.745 1 36.88 ? O3P PLP 601 B 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#