data_5QT6
#
_model_server_result.job_id            ZcyYje6yCvHKfK46GtoKbA 
_model_server_result.datetime_utc      '2025-01-25 13:39:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5QT6 
#
_exptl.entry_id    5QT6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              198.264 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-methyl-~{N}-(phenylmethyl)pyridin-2-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QT6 
_cell.length_a            60.684 
_cell.length_b            60.684 
_cell.length_c            341.846 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C13 H14 N2' 
_chem_comp.formula_weight    198.264 
_chem_comp.id                JNE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-methyl-~{N}-(phenylmethyl)pyridin-2-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N3 C6 JNE sing 182 n n 
N3 C1 JNE sing 183 n n 
C6 C10 JNE sing 184 n n 
N2 C1 JNE doub 185 n y 
N2 C5 JNE sing 186 n y 
C9 C5 JNE sing 187 n n 
C12 C10 JNE doub 188 n y 
C12 C14 JNE sing 189 n y 
C1 C4 JNE sing 190 n y 
C10 C11 JNE sing 191 n y 
C5 C8 JNE doub 192 n y 
C14 C15 JNE doub 193 n y 
C11 C13 JNE doub 194 n y 
C15 C13 JNE sing 195 n y 
C4 C7 JNE doub 196 n y 
C8 C7 JNE sing 197 n y 
C11 H1 JNE sing 198 n n 
C12 H2 JNE sing 199 n n 
C13 H3 JNE sing 200 n n 
C14 H4 JNE sing 201 n n 
C15 H5 JNE sing 202 n n 
N3 H6 JNE sing 203 n n 
C4 H7 JNE sing 204 n n 
C6 H8 JNE sing 205 n n 
C6 H9 JNE sing 206 n n 
C7 H10 JNE sing 207 n n 
C8 H11 JNE sing 208 n n 
C9 H12 JNE sing 209 n n 
C9 H13 JNE sing 210 n n 
C9 H14 JNE sing 211 n n 
#
_atom_sites.entry_id                     5QT6 
_atom_sites.fract_transf_matrix[1][1]    0.016479 
_atom_sites.fract_transf_matrix[1][2]    0.009514 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002925 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 JNE A 1 401 401 JNE LI1 . 
C 3 PEG A 1 402 1 PEG PEG . 
D 4 DMS A 1 403 2 DMS DMS . 
E 5 HOH A 1 501 57 HOH HOH . 
E 5 HOH A 2 502 64 HOH HOH . 
E 5 HOH A 3 503 22 HOH HOH . 
E 5 HOH A 4 504 42 HOH HOH . 
E 5 HOH A 5 505 17 HOH HOH . 
E 5 HOH A 6 506 35 HOH HOH . 
E 5 HOH A 7 507 28 HOH HOH . 
E 5 HOH A 8 508 27 HOH HOH . 
E 5 HOH A 9 509 47 HOH HOH . 
E 5 HOH A 10 510 26 HOH HOH . 
E 5 HOH A 11 511 29 HOH HOH . 
E 5 HOH A 12 512 52 HOH HOH . 
E 5 HOH A 13 513 58 HOH HOH . 
E 5 HOH A 14 514 43 HOH HOH . 
E 5 HOH A 15 515 12 HOH HOH . 
E 5 HOH A 16 516 40 HOH HOH . 
E 5 HOH A 17 517 14 HOH HOH . 
E 5 HOH A 18 518 25 HOH HOH . 
E 5 HOH A 19 519 55 HOH HOH . 
E 5 HOH A 20 520 8 HOH HOH . 
E 5 HOH A 21 521 6 HOH HOH . 
E 5 HOH A 22 522 65 HOH HOH . 
E 5 HOH A 23 523 20 HOH HOH . 
E 5 HOH A 24 524 11 HOH HOH . 
E 5 HOH A 25 525 45 HOH HOH . 
E 5 HOH A 26 526 7 HOH HOH . 
E 5 HOH A 27 527 10 HOH HOH . 
E 5 HOH A 28 528 5 HOH HOH . 
E 5 HOH A 29 529 13 HOH HOH . 
E 5 HOH A 30 530 24 HOH HOH . 
E 5 HOH A 31 531 2 HOH HOH . 
E 5 HOH A 32 532 32 HOH HOH . 
E 5 HOH A 33 533 54 HOH HOH . 
E 5 HOH A 34 534 37 HOH HOH . 
E 5 HOH A 35 535 46 HOH HOH . 
E 5 HOH A 36 536 1 HOH HOH . 
E 5 HOH A 37 537 18 HOH HOH . 
E 5 HOH A 38 538 34 HOH HOH . 
E 5 HOH A 39 539 41 HOH HOH . 
E 5 HOH A 40 540 3 HOH HOH . 
E 5 HOH A 41 541 36 HOH HOH . 
E 5 HOH A 42 542 38 HOH HOH . 
E 5 HOH A 43 543 16 HOH HOH . 
E 5 HOH A 44 544 56 HOH HOH . 
E 5 HOH A 45 545 4 HOH HOH . 
E 5 HOH A 46 546 50 HOH HOH . 
E 5 HOH A 47 547 62 HOH HOH . 
E 5 HOH A 48 548 15 HOH HOH . 
E 5 HOH A 49 549 33 HOH HOH . 
E 5 HOH A 50 550 9 HOH HOH . 
E 5 HOH A 51 551 49 HOH HOH . 
E 5 HOH A 52 552 67 HOH HOH . 
E 5 HOH A 53 553 23 HOH HOH . 
E 5 HOH A 54 554 59 HOH HOH . 
E 5 HOH A 55 555 61 HOH HOH . 
E 5 HOH A 56 556 68 HOH HOH . 
E 5 HOH A 57 557 63 HOH HOH . 
E 5 HOH A 58 558 19 HOH HOH . 
E 5 HOH A 59 559 44 HOH HOH . 
E 5 HOH A 60 560 66 HOH HOH . 
E 5 HOH A 61 561 51 HOH HOH . 
E 5 HOH A 62 562 30 HOH HOH . 
E 5 HOH A 63 563 53 HOH HOH . 
E 5 HOH A 64 564 21 HOH HOH . 
E 5 HOH A 65 565 48 HOH HOH . 
E 5 HOH A 66 566 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 JNE . . . B 2 8.678 6.777 -9.152 0.73 28.87 ? C1 JNE 401 A 1 
HETATM 2 C C11 JNE . . . B 2 7.096 3.195 -8.358 0.73 25.33 ? C11 JNE 401 A 1 
HETATM 3 C C12 JNE . . . B 2 8.782 3.705 -6.696 0.73 22.79 ? C12 JNE 401 A 1 
HETATM 4 C C13 JNE . . . B 2 6.289 2.622 -7.372 0.73 25.59 ? C13 JNE 401 A 1 
HETATM 5 C C14 JNE . . . B 2 7.976 3.135 -5.709 0.73 24.99 ? C14 JNE 401 A 1 
HETATM 6 C C15 JNE . . . B 2 6.73 2.596 -6.048 0.73 26.82 ? C15 JNE 401 A 1 
HETATM 7 N N2 JNE . . . B 2 9.082 8.033 -8.865 0.73 29.93 ? N2 JNE 401 A 1 
HETATM 8 N N3 JNE . . . B 2 9.504 5.764 -8.788 0.73 26.73 ? N3 JNE 401 A 1 
HETATM 9 C C4 JNE . . . B 2 7.45 6.577 -9.798 0.73 27.7 ? C4 JNE 401 A 1 
HETATM 10 C C5 JNE . . . B 2 8.349 9.122 -9.176 0.73 29.48 ? C5 JNE 401 A 1 
HETATM 11 C C6 JNE . . . B 2 9.228 4.368 -9.108 0.73 26.35 ? C6 JNE 401 A 1 
HETATM 12 C C7 JNE . . . B 2 6.667 7.685 -10.133 0.73 28.86 ? C7 JNE 401 A 1 
HETATM 13 C C8 JNE . . . B 2 7.119 8.968 -9.82 0.73 29.63 ? C8 JNE 401 A 1 
HETATM 14 C C9 JNE . . . B 2 8.882 10.508 -8.815 0.73 29.93 ? C9 JNE 401 A 1 
HETATM 15 C C10 JNE . . . B 2 8.343 3.738 -8.024 0.73 23.73 ? C10 JNE 401 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           15 
#