data_5QTB # _model_server_result.job_id ywWwMSId98pRYtIPt42nyw _model_server_result.datetime_utc '2025-01-11 06:09:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 5QTB # _exptl.entry_id 5QTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTB _cell.length_a 60.961 _cell.length_b 60.961 _cell.length_c 340.711 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 246 n n C1 C2 PEG sing 247 n n C1 H11 PEG sing 248 n n C1 H12 PEG sing 249 n n O1 HO1 PEG sing 250 n n C2 O2 PEG sing 251 n n C2 H21 PEG sing 252 n n C2 H22 PEG sing 253 n n O2 C3 PEG sing 254 n n C3 C4 PEG sing 255 n n C3 H31 PEG sing 256 n n C3 H32 PEG sing 257 n n C4 O4 PEG sing 258 n n C4 H41 PEG sing 259 n n C4 H42 PEG sing 260 n n O4 HO4 PEG sing 261 n n # _atom_sites.entry_id 5QTB _atom_sites.fract_transf_matrix[1][1] 0.016404 _atom_sites.fract_transf_matrix[1][2] 0.009471 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018942 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002935 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PJG A 1 401 401 PJG LI1 . C 3 PEG A 1 402 1 PEG PEG . D 4 DMS A 1 403 2 DMS DMS . E 5 HOH A 1 501 67 HOH HOH . E 5 HOH A 2 502 43 HOH HOH . E 5 HOH A 3 503 42 HOH HOH . E 5 HOH A 4 504 39 HOH HOH . E 5 HOH A 5 505 84 HOH HOH . E 5 HOH A 6 506 62 HOH HOH . E 5 HOH A 7 507 72 HOH HOH . E 5 HOH A 8 508 32 HOH HOH . E 5 HOH A 9 509 36 HOH HOH . E 5 HOH A 10 510 30 HOH HOH . E 5 HOH A 11 511 12 HOH HOH . E 5 HOH A 12 512 61 HOH HOH . E 5 HOH A 13 513 38 HOH HOH . E 5 HOH A 14 514 49 HOH HOH . E 5 HOH A 15 515 58 HOH HOH . E 5 HOH A 16 516 17 HOH HOH . E 5 HOH A 17 517 2 HOH HOH . E 5 HOH A 18 518 35 HOH HOH . E 5 HOH A 19 519 51 HOH HOH . E 5 HOH A 20 520 21 HOH HOH . E 5 HOH A 21 521 59 HOH HOH . E 5 HOH A 22 522 63 HOH HOH . E 5 HOH A 23 523 80 HOH HOH . E 5 HOH A 24 524 13 HOH HOH . E 5 HOH A 25 525 18 HOH HOH . E 5 HOH A 26 526 9 HOH HOH . E 5 HOH A 27 527 19 HOH HOH . E 5 HOH A 28 528 31 HOH HOH . E 5 HOH A 29 529 78 HOH HOH . E 5 HOH A 30 530 1 HOH HOH . E 5 HOH A 31 531 40 HOH HOH . E 5 HOH A 32 532 69 HOH HOH . E 5 HOH A 33 533 50 HOH HOH . E 5 HOH A 34 534 7 HOH HOH . E 5 HOH A 35 535 77 HOH HOH . E 5 HOH A 36 536 11 HOH HOH . E 5 HOH A 37 537 44 HOH HOH . E 5 HOH A 38 538 66 HOH HOH . E 5 HOH A 39 539 8 HOH HOH . E 5 HOH A 40 540 74 HOH HOH . E 5 HOH A 41 541 46 HOH HOH . E 5 HOH A 42 542 25 HOH HOH . E 5 HOH A 43 543 5 HOH HOH . E 5 HOH A 44 544 26 HOH HOH . E 5 HOH A 45 545 20 HOH HOH . E 5 HOH A 46 546 16 HOH HOH . E 5 HOH A 47 547 70 HOH HOH . E 5 HOH A 48 548 34 HOH HOH . E 5 HOH A 49 549 22 HOH HOH . E 5 HOH A 50 550 37 HOH HOH . E 5 HOH A 51 551 4 HOH HOH . E 5 HOH A 52 552 88 HOH HOH . E 5 HOH A 53 553 53 HOH HOH . E 5 HOH A 54 554 28 HOH HOH . E 5 HOH A 55 555 3 HOH HOH . E 5 HOH A 56 556 10 HOH HOH . E 5 HOH A 57 557 15 HOH HOH . E 5 HOH A 58 558 85 HOH HOH . E 5 HOH A 59 559 6 HOH HOH . E 5 HOH A 60 560 57 HOH HOH . E 5 HOH A 61 561 75 HOH HOH . E 5 HOH A 62 562 52 HOH HOH . E 5 HOH A 63 563 48 HOH HOH . E 5 HOH A 64 564 27 HOH HOH . E 5 HOH A 65 565 68 HOH HOH . E 5 HOH A 66 566 47 HOH HOH . E 5 HOH A 67 567 41 HOH HOH . E 5 HOH A 68 568 79 HOH HOH . E 5 HOH A 69 569 90 HOH HOH . E 5 HOH A 70 570 14 HOH HOH . E 5 HOH A 71 571 64 HOH HOH . E 5 HOH A 72 572 71 HOH HOH . E 5 HOH A 73 573 76 HOH HOH . E 5 HOH A 74 574 89 HOH HOH . E 5 HOH A 75 575 73 HOH HOH . E 5 HOH A 76 576 24 HOH HOH . E 5 HOH A 77 577 56 HOH HOH . E 5 HOH A 78 578 60 HOH HOH . E 5 HOH A 79 579 29 HOH HOH . E 5 HOH A 80 580 91 HOH HOH . E 5 HOH A 81 581 92 HOH HOH . E 5 HOH A 82 582 81 HOH HOH . E 5 HOH A 83 583 33 HOH HOH . E 5 HOH A 84 584 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . C 3 15.007 13.076 16.394 1 56.11 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . C 3 14.544 14.024 15.419 1 51.81 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . C 3 14.821 11.66 15.801 1 56.08 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . C 3 15.444 10.708 16.684 1 56.72 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . C 3 14.98 9.364 16.459 1 47.61 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . C 3 13.437 9.416 16.425 1 51.19 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . C 3 12.937 8.312 17.199 1 63.91 ? O4 PEG 402 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 7 #