data_5QTE # _model_server_result.job_id Bq0n0hCHoi0ZpsRUpNP6yA _model_server_result.datetime_utc '2025-01-10 08:17:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QTE # _exptl.entry_id 5QTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 271.72 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4S)-3-(4-chlorobenzene-1-carbonyl)-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTE _cell.length_a 60.583 _cell.length_b 60.583 _cell.length_c 341.208 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.745 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H10 Cl N O3 S' _chem_comp.formula_weight 271.72 _chem_comp.id PKD _chem_comp.mon_nstd_flag . _chem_comp.name '(4S)-3-(4-chlorobenzene-1-carbonyl)-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL15 C14 PKD sing 273 n n C14 C16 PKD doub 274 n y C14 C13 PKD sing 275 n y C16 C17 PKD sing 276 n y C13 C12 PKD doub 277 n y C17 C11 PKD doub 278 n y C12 C11 PKD sing 279 n y C11 C9 PKD sing 280 n n O10 C9 PKD doub 281 n n C9 N8 PKD sing 282 n n O3 C2 PKD doub 283 n n N8 C4 PKD sing 284 n n N8 C7 PKD sing 285 n n C2 C4 PKD sing 286 n n C2 O1 PKD sing 287 n n C4 C5 PKD sing 288 n n C7 S6 PKD sing 289 n n C5 S6 PKD sing 290 n n O1 H1 PKD sing 291 n n C12 H2 PKD sing 292 n n C13 H3 PKD sing 293 n n C16 H4 PKD sing 294 n n C17 H5 PKD sing 295 n n C4 H6 PKD sing 296 n n C5 H7 PKD sing 297 n n C5 H8 PKD sing 298 n n C7 H9 PKD sing 299 n n C7 H10 PKD sing 300 n n # _atom_sites.entry_id 5QTE _atom_sites.fract_transf_matrix[1][1] 0.016506 _atom_sites.fract_transf_matrix[1][2] 0.00953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PKD A 1 401 401 PKD LI1 . C 3 PO4 A 1 402 3 PO4 PO4 . D 4 NA A 1 403 4 NA NA . E 3 PO4 A 1 404 401 PO4 PO4 . F 5 GOL A 1 405 501 GOL GOL . G 6 HOH A 1 501 95 HOH HOH . G 6 HOH A 2 502 80 HOH HOH . G 6 HOH A 3 503 83 HOH HOH . G 6 HOH A 4 504 104 HOH HOH . G 6 HOH A 5 505 68 HOH HOH . G 6 HOH A 6 506 11 HOH HOH . G 6 HOH A 7 507 90 HOH HOH . G 6 HOH A 8 508 43 HOH HOH . G 6 HOH A 9 509 62 HOH HOH . G 6 HOH A 10 510 48 HOH HOH . G 6 HOH A 11 511 96 HOH HOH . G 6 HOH A 12 512 107 HOH HOH . G 6 HOH A 13 513 106 HOH HOH . G 6 HOH A 14 514 94 HOH HOH . G 6 HOH A 15 515 38 HOH HOH . G 6 HOH A 16 516 93 HOH HOH . G 6 HOH A 17 517 88 HOH HOH . G 6 HOH A 18 518 39 HOH HOH . G 6 HOH A 19 519 24 HOH HOH . G 6 HOH A 20 520 26 HOH HOH . G 6 HOH A 21 521 72 HOH HOH . G 6 HOH A 22 522 9 HOH HOH . G 6 HOH A 23 523 5 HOH HOH . G 6 HOH A 24 524 6 HOH HOH . G 6 HOH A 25 525 60 HOH HOH . G 6 HOH A 26 526 32 HOH HOH . G 6 HOH A 27 527 52 HOH HOH . G 6 HOH A 28 528 8 HOH HOH . G 6 HOH A 29 529 64 HOH HOH . G 6 HOH A 30 530 7 HOH HOH . G 6 HOH A 31 531 66 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 74 HOH HOH . G 6 HOH A 34 534 14 HOH HOH . G 6 HOH A 35 535 98 HOH HOH . G 6 HOH A 36 536 45 HOH HOH . G 6 HOH A 37 537 53 HOH HOH . G 6 HOH A 38 538 79 HOH HOH . G 6 HOH A 39 539 71 HOH HOH . G 6 HOH A 40 540 55 HOH HOH . G 6 HOH A 41 541 57 HOH HOH . G 6 HOH A 42 542 4 HOH HOH . G 6 HOH A 43 543 13 HOH HOH . G 6 HOH A 44 544 25 HOH HOH . G 6 HOH A 45 545 44 HOH HOH . G 6 HOH A 46 546 18 HOH HOH . G 6 HOH A 47 547 17 HOH HOH . G 6 HOH A 48 548 12 HOH HOH . G 6 HOH A 49 549 22 HOH HOH . G 6 HOH A 50 550 21 HOH HOH . G 6 HOH A 51 551 89 HOH HOH . G 6 HOH A 52 552 85 HOH HOH . G 6 HOH A 53 553 47 HOH HOH . G 6 HOH A 54 554 50 HOH HOH . G 6 HOH A 55 555 19 HOH HOH . G 6 HOH A 56 556 27 HOH HOH . G 6 HOH A 57 557 33 HOH HOH . G 6 HOH A 58 558 34 HOH HOH . G 6 HOH A 59 559 87 HOH HOH . G 6 HOH A 60 560 69 HOH HOH . G 6 HOH A 61 561 2 HOH HOH . G 6 HOH A 62 562 102 HOH HOH . G 6 HOH A 63 563 37 HOH HOH . G 6 HOH A 64 564 101 HOH HOH . G 6 HOH A 65 565 61 HOH HOH . G 6 HOH A 66 566 82 HOH HOH . G 6 HOH A 67 567 75 HOH HOH . G 6 HOH A 68 568 1 HOH HOH . G 6 HOH A 69 569 65 HOH HOH . G 6 HOH A 70 570 23 HOH HOH . G 6 HOH A 71 571 20 HOH HOH . G 6 HOH A 72 572 59 HOH HOH . G 6 HOH A 73 573 30 HOH HOH . G 6 HOH A 74 574 51 HOH HOH . G 6 HOH A 75 575 41 HOH HOH . G 6 HOH A 76 576 73 HOH HOH . G 6 HOH A 77 577 31 HOH HOH . G 6 HOH A 78 578 67 HOH HOH . G 6 HOH A 79 579 15 HOH HOH . G 6 HOH A 80 580 46 HOH HOH . G 6 HOH A 81 581 10 HOH HOH . G 6 HOH A 82 582 49 HOH HOH . G 6 HOH A 83 583 86 HOH HOH . G 6 HOH A 84 584 16 HOH HOH . G 6 HOH A 85 585 28 HOH HOH . G 6 HOH A 86 586 35 HOH HOH . G 6 HOH A 87 587 100 HOH HOH . G 6 HOH A 88 588 63 HOH HOH . G 6 HOH A 89 589 76 HOH HOH . G 6 HOH A 90 590 97 HOH HOH . G 6 HOH A 91 591 81 HOH HOH . G 6 HOH A 92 592 56 HOH HOH . G 6 HOH A 93 593 29 HOH HOH . G 6 HOH A 94 594 78 HOH HOH . G 6 HOH A 95 595 70 HOH HOH . G 6 HOH A 96 596 58 HOH HOH . G 6 HOH A 97 597 36 HOH HOH . G 6 HOH A 98 598 40 HOH HOH . G 6 HOH A 99 599 42 HOH HOH . G 6 HOH A 100 600 84 HOH HOH . G 6 HOH A 101 601 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PKD . . . B 2 13.737 22.649 -24.853 0.5 67.63 ? C2 PKD 401 A 1 HETATM 2 O O1 PKD . . . B 2 13.127 21.75 -24.294 0.5 65.12 ? O1 PKD 401 A 1 HETATM 3 O O3 PKD . . . B 2 13.154 23.527 -25.677 0.5 69.91 ? O3 PKD 401 A 1 HETATM 4 C C11 PKD . . . B 2 16.814 20.623 -27.428 0.5 64.66 ? C11 PKD 401 A 1 HETATM 5 C C12 PKD . . . B 2 18.173 20.889 -27.636 0.5 65.56 ? C12 PKD 401 A 1 HETATM 6 C C13 PKD . . . B 2 18.972 19.966 -28.319 0.5 64.55 ? C13 PKD 401 A 1 HETATM 7 C C14 PKD . . . B 2 18.419 18.777 -28.802 0.5 62.99 ? C14 PKD 401 A 1 HETATM 8 C C16 PKD . . . B 2 17.065 18.508 -28.599 0.5 62.43 ? C16 PKD 401 A 1 HETATM 9 C C17 PKD . . . B 2 16.268 19.433 -27.92 0.5 63.93 ? C17 PKD 401 A 1 HETATM 10 C C4 PKD . . . B 2 15.221 22.837 -24.646 0.5 67.71 ? C4 PKD 401 A 1 HETATM 11 C C5 PKD . . . B 2 15.521 22.574 -23.148 0.5 66.51 ? C5 PKD 401 A 1 HETATM 12 C C7 PKD . . . B 2 17.168 21.259 -24.645 0.5 64.98 ? C7 PKD 401 A 1 HETATM 13 C C9 PKD . . . B 2 15.909 21.593 -26.695 0.5 66.38 ? C9 PKD 401 A 1 HETATM 14 N N8 PKD . . . B 2 16.09 21.908 -25.379 0.5 66.17 ? N8 PKD 401 A 1 HETATM 15 O O10 PKD . . . B 2 15.035 22.106 -27.377 0.5 69.35 ? O10 PKD 401 A 1 HETATM 16 S S6 PKD . . . B 2 17.292 22.184 -23.091 0.5 66.13 ? S6 PKD 401 A 1 HETATM 17 CL CL15 PKD . . . B 2 19.422 17.623 -29.658 0.5 63.66 ? CL15 PKD 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #