data_5QTE # _model_server_result.job_id SFlp44Cyw6MIxaXSymMhqw _model_server_result.datetime_utc '2025-01-10 08:01:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qte # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5QTE # _exptl.entry_id 5QTE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTE _cell.length_a 60.583 _cell.length_b 60.583 _cell.length_c 341.208 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTE _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.745 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 5QTE _atom_sites.fract_transf_matrix[1][1] 0.016506 _atom_sites.fract_transf_matrix[1][2] 0.00953 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PKD A 1 401 401 PKD LI1 . C 3 PO4 A 1 402 3 PO4 PO4 . D 4 NA A 1 403 4 NA NA . E 3 PO4 A 1 404 401 PO4 PO4 . F 5 GOL A 1 405 501 GOL GOL . G 6 HOH A 1 501 95 HOH HOH . G 6 HOH A 2 502 80 HOH HOH . G 6 HOH A 3 503 83 HOH HOH . G 6 HOH A 4 504 104 HOH HOH . G 6 HOH A 5 505 68 HOH HOH . G 6 HOH A 6 506 11 HOH HOH . G 6 HOH A 7 507 90 HOH HOH . G 6 HOH A 8 508 43 HOH HOH . G 6 HOH A 9 509 62 HOH HOH . G 6 HOH A 10 510 48 HOH HOH . G 6 HOH A 11 511 96 HOH HOH . G 6 HOH A 12 512 107 HOH HOH . G 6 HOH A 13 513 106 HOH HOH . G 6 HOH A 14 514 94 HOH HOH . G 6 HOH A 15 515 38 HOH HOH . G 6 HOH A 16 516 93 HOH HOH . G 6 HOH A 17 517 88 HOH HOH . G 6 HOH A 18 518 39 HOH HOH . G 6 HOH A 19 519 24 HOH HOH . G 6 HOH A 20 520 26 HOH HOH . G 6 HOH A 21 521 72 HOH HOH . G 6 HOH A 22 522 9 HOH HOH . G 6 HOH A 23 523 5 HOH HOH . G 6 HOH A 24 524 6 HOH HOH . G 6 HOH A 25 525 60 HOH HOH . G 6 HOH A 26 526 32 HOH HOH . G 6 HOH A 27 527 52 HOH HOH . G 6 HOH A 28 528 8 HOH HOH . G 6 HOH A 29 529 64 HOH HOH . G 6 HOH A 30 530 7 HOH HOH . G 6 HOH A 31 531 66 HOH HOH . G 6 HOH A 32 532 3 HOH HOH . G 6 HOH A 33 533 74 HOH HOH . G 6 HOH A 34 534 14 HOH HOH . G 6 HOH A 35 535 98 HOH HOH . G 6 HOH A 36 536 45 HOH HOH . G 6 HOH A 37 537 53 HOH HOH . G 6 HOH A 38 538 79 HOH HOH . G 6 HOH A 39 539 71 HOH HOH . G 6 HOH A 40 540 55 HOH HOH . G 6 HOH A 41 541 57 HOH HOH . G 6 HOH A 42 542 4 HOH HOH . G 6 HOH A 43 543 13 HOH HOH . G 6 HOH A 44 544 25 HOH HOH . G 6 HOH A 45 545 44 HOH HOH . G 6 HOH A 46 546 18 HOH HOH . G 6 HOH A 47 547 17 HOH HOH . G 6 HOH A 48 548 12 HOH HOH . G 6 HOH A 49 549 22 HOH HOH . G 6 HOH A 50 550 21 HOH HOH . G 6 HOH A 51 551 89 HOH HOH . G 6 HOH A 52 552 85 HOH HOH . G 6 HOH A 53 553 47 HOH HOH . G 6 HOH A 54 554 50 HOH HOH . G 6 HOH A 55 555 19 HOH HOH . G 6 HOH A 56 556 27 HOH HOH . G 6 HOH A 57 557 33 HOH HOH . G 6 HOH A 58 558 34 HOH HOH . G 6 HOH A 59 559 87 HOH HOH . G 6 HOH A 60 560 69 HOH HOH . G 6 HOH A 61 561 2 HOH HOH . G 6 HOH A 62 562 102 HOH HOH . G 6 HOH A 63 563 37 HOH HOH . G 6 HOH A 64 564 101 HOH HOH . G 6 HOH A 65 565 61 HOH HOH . G 6 HOH A 66 566 82 HOH HOH . G 6 HOH A 67 567 75 HOH HOH . G 6 HOH A 68 568 1 HOH HOH . G 6 HOH A 69 569 65 HOH HOH . G 6 HOH A 70 570 23 HOH HOH . G 6 HOH A 71 571 20 HOH HOH . G 6 HOH A 72 572 59 HOH HOH . G 6 HOH A 73 573 30 HOH HOH . G 6 HOH A 74 574 51 HOH HOH . G 6 HOH A 75 575 41 HOH HOH . G 6 HOH A 76 576 73 HOH HOH . G 6 HOH A 77 577 31 HOH HOH . G 6 HOH A 78 578 67 HOH HOH . G 6 HOH A 79 579 15 HOH HOH . G 6 HOH A 80 580 46 HOH HOH . G 6 HOH A 81 581 10 HOH HOH . G 6 HOH A 82 582 49 HOH HOH . G 6 HOH A 83 583 86 HOH HOH . G 6 HOH A 84 584 16 HOH HOH . G 6 HOH A 85 585 28 HOH HOH . G 6 HOH A 86 586 35 HOH HOH . G 6 HOH A 87 587 100 HOH HOH . G 6 HOH A 88 588 63 HOH HOH . G 6 HOH A 89 589 76 HOH HOH . G 6 HOH A 90 590 97 HOH HOH . G 6 HOH A 91 591 81 HOH HOH . G 6 HOH A 92 592 56 HOH HOH . G 6 HOH A 93 593 29 HOH HOH . G 6 HOH A 94 594 78 HOH HOH . G 6 HOH A 95 595 70 HOH HOH . G 6 HOH A 96 596 58 HOH HOH . G 6 HOH A 97 597 36 HOH HOH . G 6 HOH A 98 598 40 HOH HOH . G 6 HOH A 99 599 42 HOH HOH . G 6 HOH A 100 600 84 HOH HOH . G 6 HOH A 101 601 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 6.55 7.328 -10.508 1 55.29 ? C1 GOL 405 A 1 HETATM 2 O O1 GOL . . . F 5 6.66 6.154 -11.248 1 54.27 ? O1 GOL 405 A 1 HETATM 3 C C2 GOL . . . F 5 7.95 7.979 -10.487 1 55.73 ? C2 GOL 405 A 1 HETATM 4 O O2 GOL . . . F 5 8.288 8.528 -11.716 1 58.35 ? O2 GOL 405 A 1 HETATM 5 C C3 GOL . . . F 5 7.874 9.041 -9.37 1 54.91 ? C3 GOL 405 A 1 HETATM 6 O O3 GOL . . . F 5 9.183 9.286 -8.965 1 54.72 ? O3 GOL 405 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #