data_5QTF # _model_server_result.job_id YDZpwwe6Q6UImPE3GST22g _model_server_result.datetime_utc '2025-01-10 13:27:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 5QTF # _exptl.entry_id 5QTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTF _cell.length_a 60.623 _cell.length_b 60.623 _cell.length_c 341.323 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.53 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5QTF _atom_sites.fract_transf_matrix[1][1] 0.016495 _atom_sites.fract_transf_matrix[1][2] 0.009524 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00293 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PK7 A 1 401 401 PK7 LI1 . C 3 PO4 A 1 402 3 PO4 PO4 . D 4 NA A 1 403 4 NA NA . E 3 PO4 A 1 404 401 PO4 PO4 . F 5 GOL A 1 405 501 GOL GOL . G 6 HOH A 1 501 55 HOH HOH . G 6 HOH A 2 502 89 HOH HOH . G 6 HOH A 3 503 51 HOH HOH . G 6 HOH A 4 504 109 HOH HOH . G 6 HOH A 5 505 8 HOH HOH . G 6 HOH A 6 506 11 HOH HOH . G 6 HOH A 7 507 44 HOH HOH . G 6 HOH A 8 508 9 HOH HOH . G 6 HOH A 9 509 6 HOH HOH . G 6 HOH A 10 510 20 HOH HOH . G 6 HOH A 11 511 106 HOH HOH . G 6 HOH A 12 512 28 HOH HOH . G 6 HOH A 13 513 42 HOH HOH . G 6 HOH A 14 514 103 HOH HOH . G 6 HOH A 15 515 84 HOH HOH . G 6 HOH A 16 516 7 HOH HOH . G 6 HOH A 17 517 4 HOH HOH . G 6 HOH A 18 518 74 HOH HOH . G 6 HOH A 19 519 14 HOH HOH . G 6 HOH A 20 520 82 HOH HOH . G 6 HOH A 21 521 77 HOH HOH . G 6 HOH A 22 522 70 HOH HOH . G 6 HOH A 23 523 5 HOH HOH . G 6 HOH A 24 524 92 HOH HOH . G 6 HOH A 25 525 24 HOH HOH . G 6 HOH A 26 526 49 HOH HOH . G 6 HOH A 27 527 108 HOH HOH . G 6 HOH A 28 528 58 HOH HOH . G 6 HOH A 29 529 34 HOH HOH . G 6 HOH A 30 530 16 HOH HOH . G 6 HOH A 31 531 46 HOH HOH . G 6 HOH A 32 532 25 HOH HOH . G 6 HOH A 33 533 41 HOH HOH . G 6 HOH A 34 534 45 HOH HOH . G 6 HOH A 35 535 79 HOH HOH . G 6 HOH A 36 536 29 HOH HOH . G 6 HOH A 37 537 3 HOH HOH . G 6 HOH A 38 538 38 HOH HOH . G 6 HOH A 39 539 17 HOH HOH . G 6 HOH A 40 540 36 HOH HOH . G 6 HOH A 41 541 19 HOH HOH . G 6 HOH A 42 542 81 HOH HOH . G 6 HOH A 43 543 50 HOH HOH . G 6 HOH A 44 544 56 HOH HOH . G 6 HOH A 45 545 64 HOH HOH . G 6 HOH A 46 546 27 HOH HOH . G 6 HOH A 47 547 1 HOH HOH . G 6 HOH A 48 548 71 HOH HOH . G 6 HOH A 49 549 100 HOH HOH . G 6 HOH A 50 550 35 HOH HOH . G 6 HOH A 51 551 12 HOH HOH . G 6 HOH A 52 552 65 HOH HOH . G 6 HOH A 53 553 22 HOH HOH . G 6 HOH A 54 554 80 HOH HOH . G 6 HOH A 55 555 60 HOH HOH . G 6 HOH A 56 556 39 HOH HOH . G 6 HOH A 57 557 40 HOH HOH . G 6 HOH A 58 558 102 HOH HOH . G 6 HOH A 59 559 47 HOH HOH . G 6 HOH A 60 560 21 HOH HOH . G 6 HOH A 61 561 18 HOH HOH . G 6 HOH A 62 562 2 HOH HOH . G 6 HOH A 63 563 88 HOH HOH . G 6 HOH A 64 564 62 HOH HOH . G 6 HOH A 65 565 48 HOH HOH . G 6 HOH A 66 566 33 HOH HOH . G 6 HOH A 67 567 10 HOH HOH . G 6 HOH A 68 568 93 HOH HOH . G 6 HOH A 69 569 91 HOH HOH . G 6 HOH A 70 570 75 HOH HOH . G 6 HOH A 71 571 78 HOH HOH . G 6 HOH A 72 572 37 HOH HOH . G 6 HOH A 73 573 59 HOH HOH . G 6 HOH A 74 574 96 HOH HOH . G 6 HOH A 75 575 94 HOH HOH . G 6 HOH A 76 576 15 HOH HOH . G 6 HOH A 77 577 98 HOH HOH . G 6 HOH A 78 578 107 HOH HOH . G 6 HOH A 79 579 31 HOH HOH . G 6 HOH A 80 580 53 HOH HOH . G 6 HOH A 81 581 30 HOH HOH . G 6 HOH A 82 582 61 HOH HOH . G 6 HOH A 83 583 69 HOH HOH . G 6 HOH A 84 584 66 HOH HOH . G 6 HOH A 85 585 85 HOH HOH . G 6 HOH A 86 586 52 HOH HOH . G 6 HOH A 87 587 86 HOH HOH . G 6 HOH A 88 588 95 HOH HOH . G 6 HOH A 89 589 97 HOH HOH . G 6 HOH A 90 590 68 HOH HOH . G 6 HOH A 91 591 72 HOH HOH . G 6 HOH A 92 592 76 HOH HOH . G 6 HOH A 93 593 101 HOH HOH . G 6 HOH A 94 594 26 HOH HOH . G 6 HOH A 95 595 57 HOH HOH . G 6 HOH A 96 596 32 HOH HOH . G 6 HOH A 97 597 90 HOH HOH . G 6 HOH A 98 598 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 1.452 _atom_site.Cartn_y 17.196 _atom_site.Cartn_z -7.471 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.25 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #