data_5QTJ # _model_server_result.job_id HYAggS5JbENUVB5UboQa1Q _model_server_result.datetime_utc '2025-01-25 14:23:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qtj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5QTJ # _exptl.entry_id 5QTJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 293.724 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(2-chloro-6-fluorophenyl)methyl]-N,2-dimethylpyrimidine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTJ _cell.length_a 60.539 _cell.length_b 60.539 _cell.length_c 342.171 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OE1 _struct_conn.ptnr1_label_comp_id GLU _struct_conn.ptnr1_label_seq_id 95 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id GLU _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id NA _struct_conn.ptnr2_label_comp_id NA _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NA _struct_conn.ptnr2_auth_seq_id 403 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.703 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H13 Cl F N3 O' _chem_comp.formula_weight 293.724 _chem_comp.id PJS _chem_comp.mon_nstd_flag . _chem_comp.name N-[(2-chloro-6-fluorophenyl)methyl]-N,2-dimethylpyrimidine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C16 PJS doub 273 n y C17 C18 PJS sing 274 n y CL19 C18 PJS sing 275 n n C16 C15 PJS sing 276 n y C4 C5 PJS doub 277 n y C4 N3 PJS sing 278 n y C18 C12 PJS doub 279 n y C5 C6 PJS sing 280 n y N3 C2 PJS doub 281 n y C15 C13 PJS doub 282 n y C12 C13 PJS sing 283 n y C12 C11 PJS sing 284 n n C6 C7 PJS sing 285 n n C6 N20 PJS doub 286 n y C10 N9 PJS sing 287 n n C7 N9 PJS sing 288 n n C7 O8 PJS doub 289 n n N9 C11 PJS sing 290 n n C13 F14 PJS sing 291 n n C2 N20 PJS sing 292 n y C2 C1 PJS sing 293 n n C1 H1 PJS sing 294 n n C1 H2 PJS sing 295 n n C1 H3 PJS sing 296 n n C11 H4 PJS sing 297 n n C11 H5 PJS sing 298 n n C15 H6 PJS sing 299 n n C16 H7 PJS sing 300 n n C17 H8 PJS sing 301 n n C10 H9 PJS sing 302 n n C10 H10 PJS sing 303 n n C10 H11 PJS sing 304 n n C4 H12 PJS sing 305 n n C5 H13 PJS sing 306 n n # _atom_sites.entry_id 5QTJ _atom_sites.fract_transf_matrix[1][1] 0.016518 _atom_sites.fract_transf_matrix[1][2] 0.009537 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PJS A 1 401 401 PJS LI1 . C 3 PO4 A 1 402 3 PO4 PO4 . D 4 NA A 1 403 4 NA NA . E 3 PO4 A 1 404 401 PO4 PO4 . F 5 GOL A 1 405 501 GOL GOL . G 6 HOH A 1 501 71 HOH HOH . G 6 HOH A 2 502 38 HOH HOH . G 6 HOH A 3 503 6 HOH HOH . G 6 HOH A 4 504 39 HOH HOH . G 6 HOH A 5 505 58 HOH HOH . G 6 HOH A 6 506 13 HOH HOH . G 6 HOH A 7 507 41 HOH HOH . G 6 HOH A 8 508 9 HOH HOH . G 6 HOH A 9 509 57 HOH HOH . G 6 HOH A 10 510 47 HOH HOH . G 6 HOH A 11 511 53 HOH HOH . G 6 HOH A 12 512 31 HOH HOH . G 6 HOH A 13 513 82 HOH HOH . G 6 HOH A 14 514 29 HOH HOH . G 6 HOH A 15 515 98 HOH HOH . G 6 HOH A 16 516 30 HOH HOH . G 6 HOH A 17 517 63 HOH HOH . G 6 HOH A 18 518 7 HOH HOH . G 6 HOH A 19 519 42 HOH HOH . G 6 HOH A 20 520 44 HOH HOH . G 6 HOH A 21 521 4 HOH HOH . G 6 HOH A 22 522 95 HOH HOH . G 6 HOH A 23 523 20 HOH HOH . G 6 HOH A 24 524 23 HOH HOH . G 6 HOH A 25 525 43 HOH HOH . G 6 HOH A 26 526 37 HOH HOH . G 6 HOH A 27 527 77 HOH HOH . G 6 HOH A 28 528 22 HOH HOH . G 6 HOH A 29 529 16 HOH HOH . G 6 HOH A 30 530 72 HOH HOH . G 6 HOH A 31 531 33 HOH HOH . G 6 HOH A 32 532 12 HOH HOH . G 6 HOH A 33 533 5 HOH HOH . G 6 HOH A 34 534 19 HOH HOH . G 6 HOH A 35 535 24 HOH HOH . G 6 HOH A 36 536 8 HOH HOH . G 6 HOH A 37 537 78 HOH HOH . G 6 HOH A 38 538 11 HOH HOH . G 6 HOH A 39 539 21 HOH HOH . G 6 HOH A 40 540 3 HOH HOH . G 6 HOH A 41 541 35 HOH HOH . G 6 HOH A 42 542 80 HOH HOH . G 6 HOH A 43 543 49 HOH HOH . G 6 HOH A 44 544 1 HOH HOH . G 6 HOH A 45 545 40 HOH HOH . G 6 HOH A 46 546 92 HOH HOH . G 6 HOH A 47 547 45 HOH HOH . G 6 HOH A 48 548 17 HOH HOH . G 6 HOH A 49 549 54 HOH HOH . G 6 HOH A 50 550 18 HOH HOH . G 6 HOH A 51 551 101 HOH HOH . G 6 HOH A 52 552 89 HOH HOH . G 6 HOH A 53 553 69 HOH HOH . G 6 HOH A 54 554 61 HOH HOH . G 6 HOH A 55 555 59 HOH HOH . G 6 HOH A 56 556 34 HOH HOH . G 6 HOH A 57 557 52 HOH HOH . G 6 HOH A 58 558 48 HOH HOH . G 6 HOH A 59 559 2 HOH HOH . G 6 HOH A 60 560 62 HOH HOH . G 6 HOH A 61 561 28 HOH HOH . G 6 HOH A 62 562 27 HOH HOH . G 6 HOH A 63 563 15 HOH HOH . G 6 HOH A 64 564 73 HOH HOH . G 6 HOH A 65 565 70 HOH HOH . G 6 HOH A 66 566 51 HOH HOH . G 6 HOH A 67 567 87 HOH HOH . G 6 HOH A 68 568 10 HOH HOH . G 6 HOH A 69 569 91 HOH HOH . G 6 HOH A 70 570 46 HOH HOH . G 6 HOH A 71 571 14 HOH HOH . G 6 HOH A 72 572 32 HOH HOH . G 6 HOH A 73 573 74 HOH HOH . G 6 HOH A 74 574 85 HOH HOH . G 6 HOH A 75 575 65 HOH HOH . G 6 HOH A 76 576 88 HOH HOH . G 6 HOH A 77 577 76 HOH HOH . G 6 HOH A 78 578 25 HOH HOH . G 6 HOH A 79 579 97 HOH HOH . G 6 HOH A 80 580 99 HOH HOH . G 6 HOH A 81 581 86 HOH HOH . G 6 HOH A 82 582 50 HOH HOH . G 6 HOH A 83 583 96 HOH HOH . G 6 HOH A 84 584 26 HOH HOH . G 6 HOH A 85 585 79 HOH HOH . G 6 HOH A 86 586 90 HOH HOH . G 6 HOH A 87 587 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PJS . . . B 2 4.853 17.395 -12.548 0.37 42.25 ? C1 PJS 401 A 1 HETATM 2 C C2 PJS . . . B 2 3.83 17.922 -13.551 0.37 46.92 ? C2 PJS 401 A 1 HETATM 3 C C11 PJS . . . B 2 -2.125 19.116 -13.238 0.37 53.12 ? C11 PJS 401 A 1 HETATM 4 C C12 PJS . . . B 2 -3.001 18.234 -14.142 0.37 52.29 ? C12 PJS 401 A 1 HETATM 5 C C13 PJS . . . B 2 -3.574 17.07 -13.618 0.37 48.48 ? C13 PJS 401 A 1 HETATM 6 C C15 PJS . . . B 2 -4.39 16.256 -14.403 0.37 50.43 ? C15 PJS 401 A 1 HETATM 7 C C16 PJS . . . B 2 -4.648 16.595 -15.73 0.37 53.56 ? C16 PJS 401 A 1 HETATM 8 C C17 PJS . . . B 2 -4.087 17.758 -16.26 0.37 56 ? C17 PJS 401 A 1 HETATM 9 C C18 PJS . . . B 2 -3.272 18.574 -15.471 0.37 55.87 ? C18 PJS 401 A 1 HETATM 10 C C10 PJS . . . B 2 -0.279 20.639 -14.097 0.37 54.31 ? C10 PJS 401 A 1 HETATM 11 C C4 PJS . . . B 2 3.343 18.899 -15.617 0.37 53.22 ? C4 PJS 401 A 1 HETATM 12 C C5 PJS . . . B 2 1.977 18.854 -15.324 0.37 55.24 ? C5 PJS 401 A 1 HETATM 13 C C6 PJS . . . B 2 1.566 18.321 -14.099 0.37 53.59 ? C6 PJS 401 A 1 HETATM 14 C C7 PJS . . . B 2 0.102 18.242 -13.703 0.37 53.62 ? C7 PJS 401 A 1 HETATM 15 F F14 PJS . . . B 2 -3.348 16.715 -12.357 0.37 44.81 ? F14 PJS 401 A 1 HETATM 16 N N20 PJS . . . B 2 2.517 17.873 -13.251 0.37 49.76 ? N20 PJS 401 A 1 HETATM 17 N N3 PJS . . . B 2 4.241 18.432 -14.728 0.37 48.34 ? N3 PJS 401 A 1 HETATM 18 N N9 PJS . . . B 2 -0.739 19.313 -13.676 0.37 53.67 ? N9 PJS 401 A 1 HETATM 19 O O8 PJS . . . B 2 -0.276 17.14 -13.34 0.37 51.56 ? O8 PJS 401 A 1 HETATM 20 CL CL19 PJS . . . B 2 -2.602 20.02 -16.195 0.37 59.88 ? CL19 PJS 401 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #