data_5QTT # _model_server_result.job_id R4DE8DXnA5VftSKafX4wMw _model_server_result.datetime_utc '2024-11-07 18:58:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qtt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":309}' # _entry.id 5QTT # _exptl.entry_id 5QTT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QTT _cell.length_a 79.04 _cell.length_b 79.04 _cell.length_c 105.57 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QTT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 127 A CYS 136 1_555 A SG CYS 194 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf3 A SG CYS 158 A CYS 168 1_555 A SG CYS 173 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 A SG CYS 184 A CYS 191 1_555 A SG CYS 212 A CYS 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5QTT _atom_sites.fract_transf_matrix[1][1] 0.012652 _atom_sites.fract_transf_matrix[1][2] 0.007305 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009472 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QEY A 1 301 1 QEY LG1 . C 3 SO4 A 1 302 2 SO4 SO4 . D 4 EDO A 1 303 3 EDO EDO . E 4 EDO A 1 304 4 EDO EDO . F 4 EDO A 1 305 8 EDO EDO . G 4 EDO A 1 306 9 EDO EDO . H 4 EDO A 1 307 14 EDO EDO . I 4 EDO A 1 308 15 EDO EDO . J 4 EDO A 1 309 16 EDO EDO . K 4 EDO A 1 310 18 EDO EDO . L 4 EDO A 1 311 19 EDO EDO . M 4 EDO A 1 312 20 EDO EDO . N 4 EDO A 1 313 21 EDO EDO . O 5 HOH A 1 401 144 HOH HOH . O 5 HOH A 2 402 20 HOH HOH . O 5 HOH A 3 403 53 HOH HOH . O 5 HOH A 4 404 3 HOH HOH . O 5 HOH A 5 405 51 HOH HOH . O 5 HOH A 6 406 2 HOH HOH . O 5 HOH A 7 407 65 HOH HOH . O 5 HOH A 8 408 6 HOH HOH . O 5 HOH A 9 409 24 HOH HOH . O 5 HOH A 10 410 161 HOH HOH . O 5 HOH A 11 411 1 HOH HOH . O 5 HOH A 12 412 5 HOH HOH . O 5 HOH A 13 413 9 HOH HOH . O 5 HOH A 14 414 16 HOH HOH . O 5 HOH A 15 415 132 HOH HOH . O 5 HOH A 16 416 90 HOH HOH . O 5 HOH A 17 417 8 HOH HOH . O 5 HOH A 18 418 141 HOH HOH . O 5 HOH A 19 419 149 HOH HOH . O 5 HOH A 20 420 34 HOH HOH . O 5 HOH A 21 421 93 HOH HOH . O 5 HOH A 22 422 27 HOH HOH . O 5 HOH A 23 423 10 HOH HOH . O 5 HOH A 24 424 33 HOH HOH . O 5 HOH A 25 425 47 HOH HOH . O 5 HOH A 26 426 56 HOH HOH . O 5 HOH A 27 427 69 HOH HOH . O 5 HOH A 28 428 130 HOH HOH . O 5 HOH A 29 429 36 HOH HOH . O 5 HOH A 30 430 43 HOH HOH . O 5 HOH A 31 431 4 HOH HOH . O 5 HOH A 32 432 89 HOH HOH . O 5 HOH A 33 433 151 HOH HOH . O 5 HOH A 34 434 35 HOH HOH . O 5 HOH A 35 435 22 HOH HOH . O 5 HOH A 36 436 7 HOH HOH . O 5 HOH A 37 437 76 HOH HOH . O 5 HOH A 38 438 32 HOH HOH . O 5 HOH A 39 439 159 HOH HOH . O 5 HOH A 40 440 81 HOH HOH . O 5 HOH A 41 441 128 HOH HOH . O 5 HOH A 42 442 49 HOH HOH . O 5 HOH A 43 443 124 HOH HOH . O 5 HOH A 44 444 156 HOH HOH . O 5 HOH A 45 445 139 HOH HOH . O 5 HOH A 46 446 11 HOH HOH . O 5 HOH A 47 447 103 HOH HOH . O 5 HOH A 48 448 129 HOH HOH . O 5 HOH A 49 449 15 HOH HOH . O 5 HOH A 50 450 29 HOH HOH . O 5 HOH A 51 451 64 HOH HOH . O 5 HOH A 52 452 88 HOH HOH . O 5 HOH A 53 453 162 HOH HOH . O 5 HOH A 54 454 150 HOH HOH . O 5 HOH A 55 455 165 HOH HOH . O 5 HOH A 56 456 105 HOH HOH . O 5 HOH A 57 457 106 HOH HOH . O 5 HOH A 58 458 145 HOH HOH . O 5 HOH A 59 459 77 HOH HOH . O 5 HOH A 60 460 25 HOH HOH . O 5 HOH A 61 461 72 HOH HOH . O 5 HOH A 62 462 48 HOH HOH . O 5 HOH A 63 463 54 HOH HOH . O 5 HOH A 64 464 87 HOH HOH . O 5 HOH A 65 465 154 HOH HOH . O 5 HOH A 66 466 125 HOH HOH . O 5 HOH A 67 467 167 HOH HOH . O 5 HOH A 68 468 172 HOH HOH . O 5 HOH A 69 469 166 HOH HOH . O 5 HOH A 70 470 45 HOH HOH . O 5 HOH A 71 471 21 HOH HOH . O 5 HOH A 72 472 155 HOH HOH . O 5 HOH A 73 473 28 HOH HOH . O 5 HOH A 74 474 171 HOH HOH . O 5 HOH A 75 475 86 HOH HOH . O 5 HOH A 76 476 83 HOH HOH . O 5 HOH A 77 477 170 HOH HOH . O 5 HOH A 78 478 108 HOH HOH . O 5 HOH A 79 479 39 HOH HOH . O 5 HOH A 80 480 12 HOH HOH . O 5 HOH A 81 481 140 HOH HOH . O 5 HOH A 82 482 75 HOH HOH . O 5 HOH A 83 483 26 HOH HOH . O 5 HOH A 84 484 97 HOH HOH . O 5 HOH A 85 485 61 HOH HOH . O 5 HOH A 86 486 163 HOH HOH . O 5 HOH A 87 487 52 HOH HOH . O 5 HOH A 88 488 71 HOH HOH . O 5 HOH A 89 489 55 HOH HOH . O 5 HOH A 90 490 41 HOH HOH . O 5 HOH A 91 491 46 HOH HOH . O 5 HOH A 92 492 120 HOH HOH . O 5 HOH A 93 493 100 HOH HOH . O 5 HOH A 94 494 136 HOH HOH . O 5 HOH A 95 495 99 HOH HOH . O 5 HOH A 96 496 17 HOH HOH . O 5 HOH A 97 497 122 HOH HOH . O 5 HOH A 98 498 94 HOH HOH . O 5 HOH A 99 499 70 HOH HOH . O 5 HOH A 100 500 13 HOH HOH . O 5 HOH A 101 501 158 HOH HOH . O 5 HOH A 102 502 85 HOH HOH . O 5 HOH A 103 503 101 HOH HOH . O 5 HOH A 104 504 58 HOH HOH . O 5 HOH A 105 505 18 HOH HOH . O 5 HOH A 106 506 173 HOH HOH . O 5 HOH A 107 507 78 HOH HOH . O 5 HOH A 108 508 152 HOH HOH . O 5 HOH A 109 509 57 HOH HOH . O 5 HOH A 110 510 91 HOH HOH . O 5 HOH A 111 511 67 HOH HOH . O 5 HOH A 112 512 50 HOH HOH . O 5 HOH A 113 513 62 HOH HOH . O 5 HOH A 114 514 31 HOH HOH . O 5 HOH A 115 515 142 HOH HOH . O 5 HOH A 116 516 37 HOH HOH . O 5 HOH A 117 517 148 HOH HOH . O 5 HOH A 118 518 107 HOH HOH . O 5 HOH A 119 519 121 HOH HOH . O 5 HOH A 120 520 175 HOH HOH . O 5 HOH A 121 521 157 HOH HOH . O 5 HOH A 122 522 138 HOH HOH . O 5 HOH A 123 523 79 HOH HOH . O 5 HOH A 124 524 59 HOH HOH . O 5 HOH A 125 525 60 HOH HOH . O 5 HOH A 126 526 98 HOH HOH . O 5 HOH A 127 527 137 HOH HOH . O 5 HOH A 128 528 131 HOH HOH . O 5 HOH A 129 529 38 HOH HOH . O 5 HOH A 130 530 84 HOH HOH . O 5 HOH A 131 531 68 HOH HOH . O 5 HOH A 132 532 66 HOH HOH . O 5 HOH A 133 533 63 HOH HOH . O 5 HOH A 134 534 30 HOH HOH . O 5 HOH A 135 535 80 HOH HOH . O 5 HOH A 136 536 19 HOH HOH . O 5 HOH A 137 537 42 HOH HOH . O 5 HOH A 138 538 115 HOH HOH . O 5 HOH A 139 539 95 HOH HOH . O 5 HOH A 140 540 123 HOH HOH . O 5 HOH A 141 541 96 HOH HOH . O 5 HOH A 142 542 73 HOH HOH . O 5 HOH A 143 543 109 HOH HOH . O 5 HOH A 144 544 44 HOH HOH . O 5 HOH A 145 545 143 HOH HOH . O 5 HOH A 146 546 116 HOH HOH . O 5 HOH A 147 547 40 HOH HOH . O 5 HOH A 148 548 134 HOH HOH . O 5 HOH A 149 549 119 HOH HOH . O 5 HOH A 150 550 118 HOH HOH . O 5 HOH A 151 551 74 HOH HOH . O 5 HOH A 152 552 114 HOH HOH . O 5 HOH A 153 553 164 HOH HOH . O 5 HOH A 154 554 14 HOH HOH . O 5 HOH A 155 555 127 HOH HOH . O 5 HOH A 156 556 82 HOH HOH . O 5 HOH A 157 557 146 HOH HOH . O 5 HOH A 158 558 113 HOH HOH . O 5 HOH A 159 559 104 HOH HOH . O 5 HOH A 160 560 23 HOH HOH . O 5 HOH A 161 561 110 HOH HOH . O 5 HOH A 162 562 117 HOH HOH . O 5 HOH A 163 563 133 HOH HOH . O 5 HOH A 164 564 147 HOH HOH . O 5 HOH A 165 565 169 HOH HOH . O 5 HOH A 166 566 102 HOH HOH . O 5 HOH A 167 567 174 HOH HOH . O 5 HOH A 168 568 135 HOH HOH . O 5 HOH A 169 569 160 HOH HOH . O 5 HOH A 170 570 168 HOH HOH . O 5 HOH A 171 571 153 HOH HOH . O 5 HOH A 172 572 92 HOH HOH . O 5 HOH A 173 573 126 HOH HOH . O 5 HOH A 174 574 112 HOH HOH . O 5 HOH A 175 575 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 20.01 -22.857 25.626 1 46.35 ? C1 EDO 309 A 1 HETATM 2 O O1 EDO . . . J 4 19.767 -23.411 24.337 1 49.68 ? O1 EDO 309 A 1 HETATM 3 C C2 EDO . . . J 4 21.504 -23.016 26.037 1 43.35 ? C2 EDO 309 A 1 HETATM 4 O O2 EDO . . . J 4 22.339 -22.152 25.299 1 41.7 ? O2 EDO 309 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #