data_5QXM # _model_server_result.job_id pBnZUB0t93mLAiY-qKStBA _model_server_result.datetime_utc '2024-11-05 00:12:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qxm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 5QXM # _exptl.entry_id 5QXM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.321 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cyclobutyl[(3aS,4R,5R,7S,8aS)-4,5-dihydroxyhexahydro-1H-3a,7-epoxycyclohepta[c]pyrrol-2(3H)-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QXM _cell.length_a 80.769 _cell.length_b 80.769 _cell.length_c 140.797 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QXM _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H21 N O4' _chem_comp.formula_weight 267.321 _chem_comp.id RHJ _chem_comp.mon_nstd_flag . _chem_comp.name cyclobutyl[(3aS,4R,5R,7S,8aS)-4,5-dihydroxyhexahydro-1H-3a,7-epoxycyclohepta[c]pyrrol-2(3H)-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C06 RHJ sing 286 n n C10 C09 RHJ sing 287 n n C10 C12 RHJ sing 288 n n C10 O11 RHJ sing 289 n n C17 C16 RHJ sing 290 n n C17 C18 RHJ sing 291 n n C02 O01 RHJ sing 292 n n C03 C04 RHJ sing 293 n n C04 C05 RHJ sing 294 n n C04 O11 RHJ sing 295 n n C05 C06 RHJ sing 296 n n C06 C07 RHJ sing 297 n n C07 N08 RHJ sing 298 n n C09 N08 RHJ sing 299 n n C12 O13 RHJ sing 300 n n C14 C16 RHJ sing 301 n n C14 N08 RHJ sing 302 n n C14 O15 RHJ doub 303 n n C16 C19 RHJ sing 304 n n C18 C19 RHJ sing 305 n n C03 C02 RHJ sing 306 n n C17 H1 RHJ sing 307 n n C17 H2 RHJ sing 308 n n C02 H3 RHJ sing 309 n n C03 H5 RHJ sing 310 n n C03 H6 RHJ sing 311 n n C04 H7 RHJ sing 312 n n C05 H8 RHJ sing 313 n n C05 H9 RHJ sing 314 n n C06 H10 RHJ sing 315 n n C07 H11 RHJ sing 316 n n C07 H12 RHJ sing 317 n n C09 H13 RHJ sing 318 n n C09 H14 RHJ sing 319 n n C12 H15 RHJ sing 320 n n C16 H17 RHJ sing 321 n n C18 H18 RHJ sing 322 n n C18 H19 RHJ sing 323 n n C19 H20 RHJ sing 324 n n C19 H21 RHJ sing 325 n n O01 H22 RHJ sing 326 n n O13 H23 RHJ sing 327 n n C02 C12 RHJ sing 328 n n # _atom_sites.entry_id 5QXM _atom_sites.fract_transf_matrix[1][1] 0.012381 _atom_sites.fract_transf_matrix[1][2] 0.007148 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 2 SO4 A 1 1202 2 SO4 SO4 . D 3 EDO A 1 1203 3 EDO EDO . E 3 EDO A 1 1204 5 EDO EDO . F 3 EDO A 1 1205 6 EDO EDO . G 4 RHJ A 1 1206 1 RHJ LIG . H 3 EDO A 1 1207 101 EDO EDO . I 3 EDO A 1 1208 101 EDO EDO . J 3 EDO A 1 1209 101 EDO EDO . K 5 HOH A 1 1301 158 HOH HOH . K 5 HOH A 2 1302 184 HOH HOH . K 5 HOH A 3 1303 128 HOH HOH . K 5 HOH A 4 1304 256 HOH HOH . K 5 HOH A 5 1305 134 HOH HOH . K 5 HOH A 6 1306 200 HOH HOH . K 5 HOH A 7 1307 144 HOH HOH . K 5 HOH A 8 1308 111 HOH HOH . K 5 HOH A 9 1309 79 HOH HOH . K 5 HOH A 10 1310 161 HOH HOH . K 5 HOH A 11 1311 87 HOH HOH . K 5 HOH A 12 1312 59 HOH HOH . K 5 HOH A 13 1313 129 HOH HOH . K 5 HOH A 14 1314 118 HOH HOH . K 5 HOH A 15 1315 191 HOH HOH . K 5 HOH A 16 1316 27 HOH HOH . K 5 HOH A 17 1317 88 HOH HOH . K 5 HOH A 18 1318 68 HOH HOH . K 5 HOH A 19 1319 113 HOH HOH . K 5 HOH A 20 1320 106 HOH HOH . K 5 HOH A 21 1321 221 HOH HOH . K 5 HOH A 22 1322 98 HOH HOH . K 5 HOH A 23 1323 194 HOH HOH . K 5 HOH A 24 1324 50 HOH HOH . K 5 HOH A 25 1325 201 HOH HOH . K 5 HOH A 26 1326 23 HOH HOH . K 5 HOH A 27 1327 203 HOH HOH . K 5 HOH A 28 1328 5 HOH HOH . K 5 HOH A 29 1329 28 HOH HOH . K 5 HOH A 30 1330 257 HOH HOH . K 5 HOH A 31 1331 116 HOH HOH . K 5 HOH A 32 1332 109 HOH HOH . K 5 HOH A 33 1333 171 HOH HOH . K 5 HOH A 34 1334 32 HOH HOH . K 5 HOH A 35 1335 56 HOH HOH . K 5 HOH A 36 1336 29 HOH HOH . K 5 HOH A 37 1337 13 HOH HOH . K 5 HOH A 38 1338 9 HOH HOH . K 5 HOH A 39 1339 236 HOH HOH . K 5 HOH A 40 1340 142 HOH HOH . K 5 HOH A 41 1341 25 HOH HOH . K 5 HOH A 42 1342 75 HOH HOH . K 5 HOH A 43 1343 16 HOH HOH . K 5 HOH A 44 1344 80 HOH HOH . K 5 HOH A 45 1345 64 HOH HOH . K 5 HOH A 46 1346 99 HOH HOH . K 5 HOH A 47 1347 77 HOH HOH . K 5 HOH A 48 1348 165 HOH HOH . K 5 HOH A 49 1349 163 HOH HOH . K 5 HOH A 50 1350 17 HOH HOH . K 5 HOH A 51 1351 206 HOH HOH . K 5 HOH A 52 1352 197 HOH HOH . K 5 HOH A 53 1353 189 HOH HOH . K 5 HOH A 54 1354 162 HOH HOH . K 5 HOH A 55 1355 140 HOH HOH . K 5 HOH A 56 1356 31 HOH HOH . K 5 HOH A 57 1357 19 HOH HOH . K 5 HOH A 58 1358 14 HOH HOH . K 5 HOH A 59 1359 61 HOH HOH . K 5 HOH A 60 1360 34 HOH HOH . K 5 HOH A 61 1361 2 HOH HOH . K 5 HOH A 62 1362 172 HOH HOH . K 5 HOH A 63 1363 47 HOH HOH . K 5 HOH A 64 1364 20 HOH HOH . K 5 HOH A 65 1365 132 HOH HOH . K 5 HOH A 66 1366 21 HOH HOH . K 5 HOH A 67 1367 104 HOH HOH . K 5 HOH A 68 1368 33 HOH HOH . K 5 HOH A 69 1369 22 HOH HOH . K 5 HOH A 70 1370 192 HOH HOH . K 5 HOH A 71 1371 24 HOH HOH . K 5 HOH A 72 1372 42 HOH HOH . K 5 HOH A 73 1373 46 HOH HOH . K 5 HOH A 74 1374 131 HOH HOH . K 5 HOH A 75 1375 1 HOH HOH . K 5 HOH A 76 1376 160 HOH HOH . K 5 HOH A 77 1377 141 HOH HOH . K 5 HOH A 78 1378 7 HOH HOH . K 5 HOH A 79 1379 139 HOH HOH . K 5 HOH A 80 1380 43 HOH HOH . K 5 HOH A 81 1381 73 HOH HOH . K 5 HOH A 82 1382 45 HOH HOH . K 5 HOH A 83 1383 76 HOH HOH . K 5 HOH A 84 1384 92 HOH HOH . K 5 HOH A 85 1385 120 HOH HOH . K 5 HOH A 86 1386 89 HOH HOH . K 5 HOH A 87 1387 40 HOH HOH . K 5 HOH A 88 1388 67 HOH HOH . K 5 HOH A 89 1389 107 HOH HOH . K 5 HOH A 90 1390 187 HOH HOH . K 5 HOH A 91 1391 176 HOH HOH . K 5 HOH A 92 1392 70 HOH HOH . K 5 HOH A 93 1393 52 HOH HOH . K 5 HOH A 94 1394 48 HOH HOH . K 5 HOH A 95 1395 54 HOH HOH . K 5 HOH A 96 1396 4 HOH HOH . K 5 HOH A 97 1397 36 HOH HOH . K 5 HOH A 98 1398 105 HOH HOH . K 5 HOH A 99 1399 155 HOH HOH . K 5 HOH A 100 1400 58 HOH HOH . K 5 HOH A 101 1401 154 HOH HOH . K 5 HOH A 102 1402 124 HOH HOH . K 5 HOH A 103 1403 15 HOH HOH . K 5 HOH A 104 1404 85 HOH HOH . K 5 HOH A 105 1405 62 HOH HOH . K 5 HOH A 106 1406 6 HOH HOH . K 5 HOH A 107 1407 12 HOH HOH . K 5 HOH A 108 1408 83 HOH HOH . K 5 HOH A 109 1409 49 HOH HOH . K 5 HOH A 110 1410 30 HOH HOH . K 5 HOH A 111 1411 86 HOH HOH . K 5 HOH A 112 1412 216 HOH HOH . K 5 HOH A 113 1413 102 HOH HOH . K 5 HOH A 114 1414 90 HOH HOH . K 5 HOH A 115 1415 95 HOH HOH . K 5 HOH A 116 1416 101 HOH HOH . K 5 HOH A 117 1417 3 HOH HOH . K 5 HOH A 118 1418 237 HOH HOH . K 5 HOH A 119 1419 130 HOH HOH . K 5 HOH A 120 1420 18 HOH HOH . K 5 HOH A 121 1421 147 HOH HOH . K 5 HOH A 122 1422 100 HOH HOH . K 5 HOH A 123 1423 39 HOH HOH . K 5 HOH A 124 1424 72 HOH HOH . K 5 HOH A 125 1425 246 HOH HOH . K 5 HOH A 126 1426 82 HOH HOH . K 5 HOH A 127 1427 196 HOH HOH . K 5 HOH A 128 1428 26 HOH HOH . K 5 HOH A 129 1429 78 HOH HOH . K 5 HOH A 130 1430 53 HOH HOH . K 5 HOH A 131 1431 207 HOH HOH . K 5 HOH A 132 1432 209 HOH HOH . K 5 HOH A 133 1433 10 HOH HOH . K 5 HOH A 134 1434 190 HOH HOH . K 5 HOH A 135 1435 123 HOH HOH . K 5 HOH A 136 1436 97 HOH HOH . K 5 HOH A 137 1437 11 HOH HOH . K 5 HOH A 138 1438 122 HOH HOH . K 5 HOH A 139 1439 115 HOH HOH . K 5 HOH A 140 1440 234 HOH HOH . K 5 HOH A 141 1441 254 HOH HOH . K 5 HOH A 142 1442 145 HOH HOH . K 5 HOH A 143 1443 243 HOH HOH . K 5 HOH A 144 1444 177 HOH HOH . K 5 HOH A 145 1445 247 HOH HOH . K 5 HOH A 146 1446 240 HOH HOH . K 5 HOH A 147 1447 57 HOH HOH . K 5 HOH A 148 1448 180 HOH HOH . K 5 HOH A 149 1449 230 HOH HOH . K 5 HOH A 150 1450 175 HOH HOH . K 5 HOH A 151 1451 94 HOH HOH . K 5 HOH A 152 1452 93 HOH HOH . K 5 HOH A 153 1453 178 HOH HOH . K 5 HOH A 154 1454 179 HOH HOH . K 5 HOH A 155 1455 38 HOH HOH . K 5 HOH A 156 1456 258 HOH HOH . K 5 HOH A 157 1457 96 HOH HOH . K 5 HOH A 158 1458 199 HOH HOH . K 5 HOH A 159 1459 215 HOH HOH . K 5 HOH A 160 1460 181 HOH HOH . K 5 HOH A 161 1461 188 HOH HOH . K 5 HOH A 162 1462 244 HOH HOH . K 5 HOH A 163 1463 69 HOH HOH . K 5 HOH A 164 1464 164 HOH HOH . K 5 HOH A 165 1465 81 HOH HOH . K 5 HOH A 166 1466 41 HOH HOH . K 5 HOH A 167 1467 167 HOH HOH . K 5 HOH A 168 1468 186 HOH HOH . K 5 HOH A 169 1469 114 HOH HOH . K 5 HOH A 170 1470 152 HOH HOH . K 5 HOH A 171 1471 91 HOH HOH . K 5 HOH A 172 1472 60 HOH HOH . K 5 HOH A 173 1473 150 HOH HOH . K 5 HOH A 174 1474 159 HOH HOH . K 5 HOH A 175 1475 110 HOH HOH . K 5 HOH A 176 1476 217 HOH HOH . K 5 HOH A 177 1477 225 HOH HOH . K 5 HOH A 178 1478 224 HOH HOH . K 5 HOH A 179 1479 220 HOH HOH . K 5 HOH A 180 1480 37 HOH HOH . K 5 HOH A 181 1481 250 HOH HOH . K 5 HOH A 182 1482 135 HOH HOH . K 5 HOH A 183 1483 151 HOH HOH . K 5 HOH A 184 1484 210 HOH HOH . K 5 HOH A 185 1485 205 HOH HOH . K 5 HOH A 186 1486 103 HOH HOH . K 5 HOH A 187 1487 8 HOH HOH . K 5 HOH A 188 1488 112 HOH HOH . K 5 HOH A 189 1489 146 HOH HOH . K 5 HOH A 190 1490 157 HOH HOH . K 5 HOH A 191 1491 84 HOH HOH . K 5 HOH A 192 1492 143 HOH HOH . K 5 HOH A 193 1493 233 HOH HOH . K 5 HOH A 194 1494 125 HOH HOH . K 5 HOH A 195 1495 119 HOH HOH . K 5 HOH A 196 1496 174 HOH HOH . K 5 HOH A 197 1497 66 HOH HOH . K 5 HOH A 198 1498 74 HOH HOH . K 5 HOH A 199 1499 44 HOH HOH . K 5 HOH A 200 1500 71 HOH HOH . K 5 HOH A 201 1501 185 HOH HOH . K 5 HOH A 202 1502 127 HOH HOH . K 5 HOH A 203 1503 149 HOH HOH . K 5 HOH A 204 1504 63 HOH HOH . K 5 HOH A 205 1505 251 HOH HOH . K 5 HOH A 206 1506 35 HOH HOH . K 5 HOH A 207 1507 117 HOH HOH . K 5 HOH A 208 1508 148 HOH HOH . K 5 HOH A 209 1509 137 HOH HOH . K 5 HOH A 210 1510 168 HOH HOH . K 5 HOH A 211 1511 245 HOH HOH . K 5 HOH A 212 1512 211 HOH HOH . K 5 HOH A 213 1513 183 HOH HOH . K 5 HOH A 214 1514 255 HOH HOH . K 5 HOH A 215 1515 249 HOH HOH . K 5 HOH A 216 1516 219 HOH HOH . K 5 HOH A 217 1517 213 HOH HOH . K 5 HOH A 218 1518 121 HOH HOH . K 5 HOH A 219 1519 136 HOH HOH . K 5 HOH A 220 1520 214 HOH HOH . K 5 HOH A 221 1521 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RHJ . . . G 4 28.374 46.749 -11.583 0.5 41.59 ? C10 RHJ 1206 A 1 HETATM 2 C C17 RHJ . . . G 4 25.888 44.044 -9.047 0.5 29.18 ? C17 RHJ 1206 A 1 HETATM 3 C C02 RHJ . . . G 4 30.702 47.782 -12.216 0.5 42.77 ? C02 RHJ 1206 A 1 HETATM 4 C C03 RHJ . . . G 4 31.117 46.137 -12.132 0.5 43.18 ? C03 RHJ 1206 A 1 HETATM 5 C C04 RHJ . . . G 4 29.949 45.293 -12.065 0.5 43.8 ? C04 RHJ 1206 A 1 HETATM 6 C C05 RHJ . . . G 4 29.143 45.413 -13.293 0.5 42.86 ? C05 RHJ 1206 A 1 HETATM 7 C C06 RHJ . . . G 4 28.174 46.401 -13.015 0.5 41.22 ? C06 RHJ 1206 A 1 HETATM 8 C C07 RHJ . . . G 4 26.715 45.848 -13.154 0.5 38.1 ? C07 RHJ 1206 A 1 HETATM 9 C C09 RHJ . . . G 4 26.948 46.73 -10.951 0.5 38.69 ? C09 RHJ 1206 A 1 HETATM 10 C C12 RHJ . . . G 4 29.14 47.958 -11.362 0.5 42.82 ? C12 RHJ 1206 A 1 HETATM 11 C C14 RHJ . . . G 4 25.228 44.759 -11.352 0.5 28.99 ? C14 RHJ 1206 A 1 HETATM 12 C C16 RHJ . . . G 4 24.836 44.753 -9.895 0.5 29.88 ? C16 RHJ 1206 A 1 HETATM 13 C C18 RHJ . . . G 4 24.741 43.355 -8.317 0.5 29.91 ? C18 RHJ 1206 A 1 HETATM 14 C C19 RHJ . . . G 4 23.829 43.681 -9.505 0.5 29.32 ? C19 RHJ 1206 A 1 HETATM 15 N N08 RHJ . . . G 4 26.22 45.703 -11.795 0.5 36.26 ? N08 RHJ 1206 A 1 HETATM 16 O O01 RHJ . . . G 4 30.612 48.115 -13.333 0.5 40.91 ? O01 RHJ 1206 A 1 HETATM 17 O O11 RHJ . . . G 4 29.098 45.717 -11.046 0.5 43.44 ? O11 RHJ 1206 A 1 HETATM 18 O O13 RHJ . . . G 4 28.512 49.046 -11.758 0.5 44.17 ? O13 RHJ 1206 A 1 HETATM 19 O O15 RHJ . . . G 4 24.737 44.016 -12.121 0.5 30.7 ? O15 RHJ 1206 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 19 #