data_5QXM
#
_model_server_result.job_id            QoCeQ6Ey0kq4Y2iiDEQY7w 
_model_server_result.datetime_utc      '2024-11-05 00:10:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qxm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1207}' 
#
_entry.id    5QXM 
#
_exptl.entry_id    5QXM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QXM 
_cell.length_a            80.769 
_cell.length_b            80.769 
_cell.length_c            140.797 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QXM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5QXM 
_atom_sites.fract_transf_matrix[1][1]    0.012381 
_atom_sites.fract_transf_matrix[1][2]    0.007148 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014296 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007102 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1201 1 SO4 SO4 . 
C 2 SO4 A 1 1202 2 SO4 SO4 . 
D 3 EDO A 1 1203 3 EDO EDO . 
E 3 EDO A 1 1204 5 EDO EDO . 
F 3 EDO A 1 1205 6 EDO EDO . 
G 4 RHJ A 1 1206 1 RHJ LIG . 
H 3 EDO A 1 1207 101 EDO EDO . 
I 3 EDO A 1 1208 101 EDO EDO . 
J 3 EDO A 1 1209 101 EDO EDO . 
K 5 HOH A 1 1301 158 HOH HOH . 
K 5 HOH A 2 1302 184 HOH HOH . 
K 5 HOH A 3 1303 128 HOH HOH . 
K 5 HOH A 4 1304 256 HOH HOH . 
K 5 HOH A 5 1305 134 HOH HOH . 
K 5 HOH A 6 1306 200 HOH HOH . 
K 5 HOH A 7 1307 144 HOH HOH . 
K 5 HOH A 8 1308 111 HOH HOH . 
K 5 HOH A 9 1309 79 HOH HOH . 
K 5 HOH A 10 1310 161 HOH HOH . 
K 5 HOH A 11 1311 87 HOH HOH . 
K 5 HOH A 12 1312 59 HOH HOH . 
K 5 HOH A 13 1313 129 HOH HOH . 
K 5 HOH A 14 1314 118 HOH HOH . 
K 5 HOH A 15 1315 191 HOH HOH . 
K 5 HOH A 16 1316 27 HOH HOH . 
K 5 HOH A 17 1317 88 HOH HOH . 
K 5 HOH A 18 1318 68 HOH HOH . 
K 5 HOH A 19 1319 113 HOH HOH . 
K 5 HOH A 20 1320 106 HOH HOH . 
K 5 HOH A 21 1321 221 HOH HOH . 
K 5 HOH A 22 1322 98 HOH HOH . 
K 5 HOH A 23 1323 194 HOH HOH . 
K 5 HOH A 24 1324 50 HOH HOH . 
K 5 HOH A 25 1325 201 HOH HOH . 
K 5 HOH A 26 1326 23 HOH HOH . 
K 5 HOH A 27 1327 203 HOH HOH . 
K 5 HOH A 28 1328 5 HOH HOH . 
K 5 HOH A 29 1329 28 HOH HOH . 
K 5 HOH A 30 1330 257 HOH HOH . 
K 5 HOH A 31 1331 116 HOH HOH . 
K 5 HOH A 32 1332 109 HOH HOH . 
K 5 HOH A 33 1333 171 HOH HOH . 
K 5 HOH A 34 1334 32 HOH HOH . 
K 5 HOH A 35 1335 56 HOH HOH . 
K 5 HOH A 36 1336 29 HOH HOH . 
K 5 HOH A 37 1337 13 HOH HOH . 
K 5 HOH A 38 1338 9 HOH HOH . 
K 5 HOH A 39 1339 236 HOH HOH . 
K 5 HOH A 40 1340 142 HOH HOH . 
K 5 HOH A 41 1341 25 HOH HOH . 
K 5 HOH A 42 1342 75 HOH HOH . 
K 5 HOH A 43 1343 16 HOH HOH . 
K 5 HOH A 44 1344 80 HOH HOH . 
K 5 HOH A 45 1345 64 HOH HOH . 
K 5 HOH A 46 1346 99 HOH HOH . 
K 5 HOH A 47 1347 77 HOH HOH . 
K 5 HOH A 48 1348 165 HOH HOH . 
K 5 HOH A 49 1349 163 HOH HOH . 
K 5 HOH A 50 1350 17 HOH HOH . 
K 5 HOH A 51 1351 206 HOH HOH . 
K 5 HOH A 52 1352 197 HOH HOH . 
K 5 HOH A 53 1353 189 HOH HOH . 
K 5 HOH A 54 1354 162 HOH HOH . 
K 5 HOH A 55 1355 140 HOH HOH . 
K 5 HOH A 56 1356 31 HOH HOH . 
K 5 HOH A 57 1357 19 HOH HOH . 
K 5 HOH A 58 1358 14 HOH HOH . 
K 5 HOH A 59 1359 61 HOH HOH . 
K 5 HOH A 60 1360 34 HOH HOH . 
K 5 HOH A 61 1361 2 HOH HOH . 
K 5 HOH A 62 1362 172 HOH HOH . 
K 5 HOH A 63 1363 47 HOH HOH . 
K 5 HOH A 64 1364 20 HOH HOH . 
K 5 HOH A 65 1365 132 HOH HOH . 
K 5 HOH A 66 1366 21 HOH HOH . 
K 5 HOH A 67 1367 104 HOH HOH . 
K 5 HOH A 68 1368 33 HOH HOH . 
K 5 HOH A 69 1369 22 HOH HOH . 
K 5 HOH A 70 1370 192 HOH HOH . 
K 5 HOH A 71 1371 24 HOH HOH . 
K 5 HOH A 72 1372 42 HOH HOH . 
K 5 HOH A 73 1373 46 HOH HOH . 
K 5 HOH A 74 1374 131 HOH HOH . 
K 5 HOH A 75 1375 1 HOH HOH . 
K 5 HOH A 76 1376 160 HOH HOH . 
K 5 HOH A 77 1377 141 HOH HOH . 
K 5 HOH A 78 1378 7 HOH HOH . 
K 5 HOH A 79 1379 139 HOH HOH . 
K 5 HOH A 80 1380 43 HOH HOH . 
K 5 HOH A 81 1381 73 HOH HOH . 
K 5 HOH A 82 1382 45 HOH HOH . 
K 5 HOH A 83 1383 76 HOH HOH . 
K 5 HOH A 84 1384 92 HOH HOH . 
K 5 HOH A 85 1385 120 HOH HOH . 
K 5 HOH A 86 1386 89 HOH HOH . 
K 5 HOH A 87 1387 40 HOH HOH . 
K 5 HOH A 88 1388 67 HOH HOH . 
K 5 HOH A 89 1389 107 HOH HOH . 
K 5 HOH A 90 1390 187 HOH HOH . 
K 5 HOH A 91 1391 176 HOH HOH . 
K 5 HOH A 92 1392 70 HOH HOH . 
K 5 HOH A 93 1393 52 HOH HOH . 
K 5 HOH A 94 1394 48 HOH HOH . 
K 5 HOH A 95 1395 54 HOH HOH . 
K 5 HOH A 96 1396 4 HOH HOH . 
K 5 HOH A 97 1397 36 HOH HOH . 
K 5 HOH A 98 1398 105 HOH HOH . 
K 5 HOH A 99 1399 155 HOH HOH . 
K 5 HOH A 100 1400 58 HOH HOH . 
K 5 HOH A 101 1401 154 HOH HOH . 
K 5 HOH A 102 1402 124 HOH HOH . 
K 5 HOH A 103 1403 15 HOH HOH . 
K 5 HOH A 104 1404 85 HOH HOH . 
K 5 HOH A 105 1405 62 HOH HOH . 
K 5 HOH A 106 1406 6 HOH HOH . 
K 5 HOH A 107 1407 12 HOH HOH . 
K 5 HOH A 108 1408 83 HOH HOH . 
K 5 HOH A 109 1409 49 HOH HOH . 
K 5 HOH A 110 1410 30 HOH HOH . 
K 5 HOH A 111 1411 86 HOH HOH . 
K 5 HOH A 112 1412 216 HOH HOH . 
K 5 HOH A 113 1413 102 HOH HOH . 
K 5 HOH A 114 1414 90 HOH HOH . 
K 5 HOH A 115 1415 95 HOH HOH . 
K 5 HOH A 116 1416 101 HOH HOH . 
K 5 HOH A 117 1417 3 HOH HOH . 
K 5 HOH A 118 1418 237 HOH HOH . 
K 5 HOH A 119 1419 130 HOH HOH . 
K 5 HOH A 120 1420 18 HOH HOH . 
K 5 HOH A 121 1421 147 HOH HOH . 
K 5 HOH A 122 1422 100 HOH HOH . 
K 5 HOH A 123 1423 39 HOH HOH . 
K 5 HOH A 124 1424 72 HOH HOH . 
K 5 HOH A 125 1425 246 HOH HOH . 
K 5 HOH A 126 1426 82 HOH HOH . 
K 5 HOH A 127 1427 196 HOH HOH . 
K 5 HOH A 128 1428 26 HOH HOH . 
K 5 HOH A 129 1429 78 HOH HOH . 
K 5 HOH A 130 1430 53 HOH HOH . 
K 5 HOH A 131 1431 207 HOH HOH . 
K 5 HOH A 132 1432 209 HOH HOH . 
K 5 HOH A 133 1433 10 HOH HOH . 
K 5 HOH A 134 1434 190 HOH HOH . 
K 5 HOH A 135 1435 123 HOH HOH . 
K 5 HOH A 136 1436 97 HOH HOH . 
K 5 HOH A 137 1437 11 HOH HOH . 
K 5 HOH A 138 1438 122 HOH HOH . 
K 5 HOH A 139 1439 115 HOH HOH . 
K 5 HOH A 140 1440 234 HOH HOH . 
K 5 HOH A 141 1441 254 HOH HOH . 
K 5 HOH A 142 1442 145 HOH HOH . 
K 5 HOH A 143 1443 243 HOH HOH . 
K 5 HOH A 144 1444 177 HOH HOH . 
K 5 HOH A 145 1445 247 HOH HOH . 
K 5 HOH A 146 1446 240 HOH HOH . 
K 5 HOH A 147 1447 57 HOH HOH . 
K 5 HOH A 148 1448 180 HOH HOH . 
K 5 HOH A 149 1449 230 HOH HOH . 
K 5 HOH A 150 1450 175 HOH HOH . 
K 5 HOH A 151 1451 94 HOH HOH . 
K 5 HOH A 152 1452 93 HOH HOH . 
K 5 HOH A 153 1453 178 HOH HOH . 
K 5 HOH A 154 1454 179 HOH HOH . 
K 5 HOH A 155 1455 38 HOH HOH . 
K 5 HOH A 156 1456 258 HOH HOH . 
K 5 HOH A 157 1457 96 HOH HOH . 
K 5 HOH A 158 1458 199 HOH HOH . 
K 5 HOH A 159 1459 215 HOH HOH . 
K 5 HOH A 160 1460 181 HOH HOH . 
K 5 HOH A 161 1461 188 HOH HOH . 
K 5 HOH A 162 1462 244 HOH HOH . 
K 5 HOH A 163 1463 69 HOH HOH . 
K 5 HOH A 164 1464 164 HOH HOH . 
K 5 HOH A 165 1465 81 HOH HOH . 
K 5 HOH A 166 1466 41 HOH HOH . 
K 5 HOH A 167 1467 167 HOH HOH . 
K 5 HOH A 168 1468 186 HOH HOH . 
K 5 HOH A 169 1469 114 HOH HOH . 
K 5 HOH A 170 1470 152 HOH HOH . 
K 5 HOH A 171 1471 91 HOH HOH . 
K 5 HOH A 172 1472 60 HOH HOH . 
K 5 HOH A 173 1473 150 HOH HOH . 
K 5 HOH A 174 1474 159 HOH HOH . 
K 5 HOH A 175 1475 110 HOH HOH . 
K 5 HOH A 176 1476 217 HOH HOH . 
K 5 HOH A 177 1477 225 HOH HOH . 
K 5 HOH A 178 1478 224 HOH HOH . 
K 5 HOH A 179 1479 220 HOH HOH . 
K 5 HOH A 180 1480 37 HOH HOH . 
K 5 HOH A 181 1481 250 HOH HOH . 
K 5 HOH A 182 1482 135 HOH HOH . 
K 5 HOH A 183 1483 151 HOH HOH . 
K 5 HOH A 184 1484 210 HOH HOH . 
K 5 HOH A 185 1485 205 HOH HOH . 
K 5 HOH A 186 1486 103 HOH HOH . 
K 5 HOH A 187 1487 8 HOH HOH . 
K 5 HOH A 188 1488 112 HOH HOH . 
K 5 HOH A 189 1489 146 HOH HOH . 
K 5 HOH A 190 1490 157 HOH HOH . 
K 5 HOH A 191 1491 84 HOH HOH . 
K 5 HOH A 192 1492 143 HOH HOH . 
K 5 HOH A 193 1493 233 HOH HOH . 
K 5 HOH A 194 1494 125 HOH HOH . 
K 5 HOH A 195 1495 119 HOH HOH . 
K 5 HOH A 196 1496 174 HOH HOH . 
K 5 HOH A 197 1497 66 HOH HOH . 
K 5 HOH A 198 1498 74 HOH HOH . 
K 5 HOH A 199 1499 44 HOH HOH . 
K 5 HOH A 200 1500 71 HOH HOH . 
K 5 HOH A 201 1501 185 HOH HOH . 
K 5 HOH A 202 1502 127 HOH HOH . 
K 5 HOH A 203 1503 149 HOH HOH . 
K 5 HOH A 204 1504 63 HOH HOH . 
K 5 HOH A 205 1505 251 HOH HOH . 
K 5 HOH A 206 1506 35 HOH HOH . 
K 5 HOH A 207 1507 117 HOH HOH . 
K 5 HOH A 208 1508 148 HOH HOH . 
K 5 HOH A 209 1509 137 HOH HOH . 
K 5 HOH A 210 1510 168 HOH HOH . 
K 5 HOH A 211 1511 245 HOH HOH . 
K 5 HOH A 212 1512 211 HOH HOH . 
K 5 HOH A 213 1513 183 HOH HOH . 
K 5 HOH A 214 1514 255 HOH HOH . 
K 5 HOH A 215 1515 249 HOH HOH . 
K 5 HOH A 216 1516 219 HOH HOH . 
K 5 HOH A 217 1517 213 HOH HOH . 
K 5 HOH A 218 1518 121 HOH HOH . 
K 5 HOH A 219 1519 136 HOH HOH . 
K 5 HOH A 220 1520 214 HOH HOH . 
K 5 HOH A 221 1521 204 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . H 3 30.823 42.004 -14.102 0.5 60.15 ? C1 EDO 1207 A 1 
HETATM 2 O O1 EDO . . . H 3 30.163 42.809 -13.172 0.5 60.08 ? O1 EDO 1207 A 1 
HETATM 3 C C2 EDO . . . H 3 30.324 42.151 -15.498 0.5 61.65 ? C2 EDO 1207 A 1 
HETATM 4 O O2 EDO . . . H 3 29.849 43.452 -15.795 0.5 63.14 ? O2 EDO 1207 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#