data_5QXP # _model_server_result.job_id 5O9-Ch2KtboWMIXciPF0-Q _model_server_result.datetime_utc '2024-11-26 10:11:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qxp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5QXP # _exptl.entry_id 5QXP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 231.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2R)-3-(furan-2-yl)-2-(pyridin-4-yl)propanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QXP _cell.length_a 80.5 _cell.length_b 80.5 _cell.length_c 139.79 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QXP _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N O3' _chem_comp.formula_weight 231.247 _chem_comp.id RH4 _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2R)-3-(furan-2-yl)-2-(pyridin-4-yl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 O2 RH4 sing 286 n y C7 C6 RH4 doub 287 n y O2 C4 RH4 sing 288 n y C6 C5 RH4 sing 289 n y C4 C3 RH4 sing 290 n n C4 C5 RH4 doub 291 n y C3 C2 RH4 sing 292 n n O C RH4 doub 293 n n C2 C RH4 sing 294 n n C2 C8 RH4 sing 295 n n C O1 RH4 sing 296 n n C9 C8 RH4 doub 297 n y C9 C10 RH4 sing 298 n y C8 C12 RH4 sing 299 n y C10 N RH4 doub 300 n y O1 C1 RH4 sing 301 n n C12 C11 RH4 doub 302 n y N C11 RH4 sing 303 n y C5 H1 RH4 sing 304 n n C6 H2 RH4 sing 305 n n C7 H3 RH4 sing 306 n n C10 H4 RH4 sing 307 n n C1 H5 RH4 sing 308 n n C1 H6 RH4 sing 309 n n C1 H7 RH4 sing 310 n n C11 H8 RH4 sing 311 n n C12 H9 RH4 sing 312 n n C2 H10 RH4 sing 313 n n C3 H11 RH4 sing 314 n n C3 H12 RH4 sing 315 n n C9 H13 RH4 sing 316 n n # _atom_sites.entry_id 5QXP _atom_sites.fract_transf_matrix[1][1] 0.012422 _atom_sites.fract_transf_matrix[1][2] 0.007172 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007154 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RH4 A 1 1201 1201 RH4 LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 4 EDO A 1 1204 3 EDO EDO . F 4 EDO A 1 1205 5 EDO EDO . G 4 EDO A 1 1206 6 EDO EDO . H 4 EDO A 1 1207 7 EDO EDO . I 5 HOH A 1 1301 158 HOH HOH . I 5 HOH A 2 1302 134 HOH HOH . I 5 HOH A 3 1303 184 HOH HOH . I 5 HOH A 4 1304 79 HOH HOH . I 5 HOH A 5 1305 256 HOH HOH . I 5 HOH A 6 1306 144 HOH HOH . I 5 HOH A 7 1307 161 HOH HOH . I 5 HOH A 8 1308 68 HOH HOH . I 5 HOH A 9 1309 191 HOH HOH . I 5 HOH A 10 1310 128 HOH HOH . I 5 HOH A 11 1311 111 HOH HOH . I 5 HOH A 12 1312 32 HOH HOH . I 5 HOH A 13 1313 243 HOH HOH . I 5 HOH A 14 1314 194 HOH HOH . I 5 HOH A 15 1315 118 HOH HOH . I 5 HOH A 16 1316 94 HOH HOH . I 5 HOH A 17 1317 88 HOH HOH . I 5 HOH A 18 1318 98 HOH HOH . I 5 HOH A 19 1319 5 HOH HOH . I 5 HOH A 20 1320 201 HOH HOH . I 5 HOH A 21 1321 87 HOH HOH . I 5 HOH A 22 1322 52 HOH HOH . I 5 HOH A 23 1323 129 HOH HOH . I 5 HOH A 24 1324 113 HOH HOH . I 5 HOH A 25 1325 27 HOH HOH . I 5 HOH A 26 1326 171 HOH HOH . I 5 HOH A 27 1327 23 HOH HOH . I 5 HOH A 28 1328 50 HOH HOH . I 5 HOH A 29 1329 59 HOH HOH . I 5 HOH A 30 1330 28 HOH HOH . I 5 HOH A 31 1331 20 HOH HOH . I 5 HOH A 32 1332 163 HOH HOH . I 5 HOH A 33 1333 106 HOH HOH . I 5 HOH A 34 1334 192 HOH HOH . I 5 HOH A 35 1335 109 HOH HOH . I 5 HOH A 36 1336 64 HOH HOH . I 5 HOH A 37 1337 221 HOH HOH . I 5 HOH A 38 1338 55 HOH HOH . I 5 HOH A 39 1339 203 HOH HOH . I 5 HOH A 40 1340 13 HOH HOH . I 5 HOH A 41 1341 142 HOH HOH . I 5 HOH A 42 1342 75 HOH HOH . I 5 HOH A 43 1343 200 HOH HOH . I 5 HOH A 44 1344 77 HOH HOH . I 5 HOH A 45 1345 162 HOH HOH . I 5 HOH A 46 1346 132 HOH HOH . I 5 HOH A 47 1347 206 HOH HOH . I 5 HOH A 48 1348 16 HOH HOH . I 5 HOH A 49 1349 56 HOH HOH . I 5 HOH A 50 1350 25 HOH HOH . I 5 HOH A 51 1351 9 HOH HOH . I 5 HOH A 52 1352 17 HOH HOH . I 5 HOH A 53 1353 80 HOH HOH . I 5 HOH A 54 1354 34 HOH HOH . I 5 HOH A 55 1355 165 HOH HOH . I 5 HOH A 56 1356 2 HOH HOH . I 5 HOH A 57 1357 42 HOH HOH . I 5 HOH A 58 1358 99 HOH HOH . I 5 HOH A 59 1359 19 HOH HOH . I 5 HOH A 60 1360 47 HOH HOH . I 5 HOH A 61 1361 33 HOH HOH . I 5 HOH A 62 1362 189 HOH HOH . I 5 HOH A 63 1363 61 HOH HOH . I 5 HOH A 64 1364 31 HOH HOH . I 5 HOH A 65 1365 141 HOH HOH . I 5 HOH A 66 1366 24 HOH HOH . I 5 HOH A 67 1367 43 HOH HOH . I 5 HOH A 68 1368 46 HOH HOH . I 5 HOH A 69 1369 76 HOH HOH . I 5 HOH A 70 1370 160 HOH HOH . I 5 HOH A 71 1371 48 HOH HOH . I 5 HOH A 72 1372 139 HOH HOH . I 5 HOH A 73 1373 172 HOH HOH . I 5 HOH A 74 1374 104 HOH HOH . I 5 HOH A 75 1375 7 HOH HOH . I 5 HOH A 76 1376 1 HOH HOH . I 5 HOH A 77 1377 22 HOH HOH . I 5 HOH A 78 1378 29 HOH HOH . I 5 HOH A 79 1379 21 HOH HOH . I 5 HOH A 80 1380 14 HOH HOH . I 5 HOH A 81 1381 45 HOH HOH . I 5 HOH A 82 1382 89 HOH HOH . I 5 HOH A 83 1383 15 HOH HOH . I 5 HOH A 84 1384 197 HOH HOH . I 5 HOH A 85 1385 73 HOH HOH . I 5 HOH A 86 1386 236 HOH HOH . I 5 HOH A 87 1387 131 HOH HOH . I 5 HOH A 88 1388 54 HOH HOH . I 5 HOH A 89 1389 100 HOH HOH . I 5 HOH A 90 1390 92 HOH HOH . I 5 HOH A 91 1391 187 HOH HOH . I 5 HOH A 92 1392 216 HOH HOH . I 5 HOH A 93 1393 130 HOH HOH . I 5 HOH A 94 1394 58 HOH HOH . I 5 HOH A 95 1395 120 HOH HOH . I 5 HOH A 96 1396 12 HOH HOH . I 5 HOH A 97 1397 6 HOH HOH . I 5 HOH A 98 1398 154 HOH HOH . I 5 HOH A 99 1399 4 HOH HOH . I 5 HOH A 100 1400 90 HOH HOH . I 5 HOH A 101 1401 70 HOH HOH . I 5 HOH A 102 1402 102 HOH HOH . I 5 HOH A 103 1403 36 HOH HOH . I 5 HOH A 104 1404 85 HOH HOH . I 5 HOH A 105 1405 30 HOH HOH . I 5 HOH A 106 1406 107 HOH HOH . I 5 HOH A 107 1407 67 HOH HOH . I 5 HOH A 108 1408 155 HOH HOH . I 5 HOH A 109 1409 40 HOH HOH . I 5 HOH A 110 1410 105 HOH HOH . I 5 HOH A 111 1411 176 HOH HOH . I 5 HOH A 112 1412 83 HOH HOH . I 5 HOH A 113 1413 49 HOH HOH . I 5 HOH A 114 1414 82 HOH HOH . I 5 HOH A 115 1415 190 HOH HOH . I 5 HOH A 116 1416 51 HOH HOH . I 5 HOH A 117 1417 240 HOH HOH . I 5 HOH A 118 1418 3 HOH HOH . I 5 HOH A 119 1419 95 HOH HOH . I 5 HOH A 120 1420 196 HOH HOH . I 5 HOH A 121 1421 237 HOH HOH . I 5 HOH A 122 1422 145 HOH HOH . I 5 HOH A 123 1423 101 HOH HOH . I 5 HOH A 124 1424 207 HOH HOH . I 5 HOH A 125 1425 234 HOH HOH . I 5 HOH A 126 1426 147 HOH HOH . I 5 HOH A 127 1427 72 HOH HOH . I 5 HOH A 128 1428 78 HOH HOH . I 5 HOH A 129 1429 39 HOH HOH . I 5 HOH A 130 1430 97 HOH HOH . I 5 HOH A 131 1431 62 HOH HOH . I 5 HOH A 132 1432 86 HOH HOH . I 5 HOH A 133 1433 18 HOH HOH . I 5 HOH A 134 1434 209 HOH HOH . I 5 HOH A 135 1435 11 HOH HOH . I 5 HOH A 136 1436 10 HOH HOH . I 5 HOH A 137 1437 123 HOH HOH . I 5 HOH A 138 1438 124 HOH HOH . I 5 HOH A 139 1439 247 HOH HOH . I 5 HOH A 140 1440 258 HOH HOH . I 5 HOH A 141 1441 246 HOH HOH . I 5 HOH A 142 1442 254 HOH HOH . I 5 HOH A 143 1443 53 HOH HOH . I 5 HOH A 144 1444 26 HOH HOH . I 5 HOH A 145 1445 57 HOH HOH . I 5 HOH A 146 1446 175 HOH HOH . I 5 HOH A 147 1447 215 HOH HOH . I 5 HOH A 148 1448 230 HOH HOH . I 5 HOH A 149 1449 93 HOH HOH . I 5 HOH A 150 1450 180 HOH HOH . I 5 HOH A 151 1451 96 HOH HOH . I 5 HOH A 152 1452 115 HOH HOH . I 5 HOH A 153 1453 178 HOH HOH . I 5 HOH A 154 1454 177 HOH HOH . I 5 HOH A 155 1455 38 HOH HOH . I 5 HOH A 156 1456 181 HOH HOH . I 5 HOH A 157 1457 122 HOH HOH . I 5 HOH A 158 1458 179 HOH HOH . I 5 HOH A 159 1459 244 HOH HOH . I 5 HOH A 160 1460 188 HOH HOH . I 5 HOH A 161 1461 164 HOH HOH . I 5 HOH A 162 1462 199 HOH HOH . I 5 HOH A 163 1463 114 HOH HOH . I 5 HOH A 164 1464 41 HOH HOH . I 5 HOH A 165 1465 257 HOH HOH . I 5 HOH A 166 1466 81 HOH HOH . I 5 HOH A 167 1467 110 HOH HOH . I 5 HOH A 168 1468 248 HOH HOH . I 5 HOH A 169 1469 152 HOH HOH . I 5 HOH A 170 1470 167 HOH HOH . I 5 HOH A 171 1471 91 HOH HOH . I 5 HOH A 172 1472 186 HOH HOH . I 5 HOH A 173 1473 69 HOH HOH . I 5 HOH A 174 1474 150 HOH HOH . I 5 HOH A 175 1475 60 HOH HOH . I 5 HOH A 176 1476 224 HOH HOH . I 5 HOH A 177 1477 217 HOH HOH . I 5 HOH A 178 1478 220 HOH HOH . I 5 HOH A 179 1479 159 HOH HOH . I 5 HOH A 180 1480 135 HOH HOH . I 5 HOH A 181 1481 37 HOH HOH . I 5 HOH A 182 1482 250 HOH HOH . I 5 HOH A 183 1483 205 HOH HOH . I 5 HOH A 184 1484 225 HOH HOH . I 5 HOH A 185 1485 151 HOH HOH . I 5 HOH A 186 1486 157 HOH HOH . I 5 HOH A 187 1487 112 HOH HOH . I 5 HOH A 188 1488 8 HOH HOH . I 5 HOH A 189 1489 66 HOH HOH . I 5 HOH A 190 1490 146 HOH HOH . I 5 HOH A 191 1491 103 HOH HOH . I 5 HOH A 192 1492 174 HOH HOH . I 5 HOH A 193 1493 84 HOH HOH . I 5 HOH A 194 1494 210 HOH HOH . I 5 HOH A 195 1495 233 HOH HOH . I 5 HOH A 196 1496 119 HOH HOH . I 5 HOH A 197 1497 143 HOH HOH . I 5 HOH A 198 1498 137 HOH HOH . I 5 HOH A 199 1499 71 HOH HOH . I 5 HOH A 200 1500 74 HOH HOH . I 5 HOH A 201 1501 125 HOH HOH . I 5 HOH A 202 1502 44 HOH HOH . I 5 HOH A 203 1503 202 HOH HOH . I 5 HOH A 204 1504 185 HOH HOH . I 5 HOH A 205 1505 63 HOH HOH . I 5 HOH A 206 1506 148 HOH HOH . I 5 HOH A 207 1507 117 HOH HOH . I 5 HOH A 208 1508 127 HOH HOH . I 5 HOH A 209 1509 149 HOH HOH . I 5 HOH A 210 1510 251 HOH HOH . I 5 HOH A 211 1511 245 HOH HOH . I 5 HOH A 212 1512 211 HOH HOH . I 5 HOH A 213 1513 35 HOH HOH . I 5 HOH A 214 1514 259 HOH HOH . I 5 HOH A 215 1515 183 HOH HOH . I 5 HOH A 216 1516 168 HOH HOH . I 5 HOH A 217 1517 249 HOH HOH . I 5 HOH A 218 1518 260 HOH HOH . I 5 HOH A 219 1519 255 HOH HOH . I 5 HOH A 220 1520 213 HOH HOH . I 5 HOH A 221 1521 219 HOH HOH . I 5 HOH A 222 1522 121 HOH HOH . I 5 HOH A 223 1523 136 HOH HOH . I 5 HOH A 224 1524 214 HOH HOH . I 5 HOH A 225 1525 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RH4 . . . B 2 28.27 46.367 -13.646 0.48 33.43 ? C4 RH4 1201 A 1 HETATM 2 C C5 RH4 . . . B 2 28.742 47.483 -12.991 0.48 33.74 ? C5 RH4 1201 A 1 HETATM 3 C C6 RH4 . . . B 2 29.913 47.905 -13.712 0.48 34.25 ? C6 RH4 1201 A 1 HETATM 4 C C7 RH4 . . . B 2 30.059 47.022 -14.751 0.48 34.5 ? C7 RH4 1201 A 1 HETATM 5 C C8 RH4 . . . B 2 27.856 44.781 -11.038 0.48 29.56 ? C8 RH4 1201 A 1 HETATM 6 C C10 RH4 . . . B 2 29.471 43.029 -10.545 0.48 29.39 ? C10 RH4 1201 A 1 HETATM 7 N N RH4 . . . B 2 29.847 43.643 -9.401 0.48 29.49 ? N RH4 1201 A 1 HETATM 8 C C RH4 . . . B 2 25.432 44.78 -11.53 0.48 28.49 ? C RH4 1201 A 1 HETATM 9 O O RH4 . . . B 2 24.832 43.967 -12.225 0.48 27.34 ? O RH4 1201 A 1 HETATM 10 C C1 RH4 . . . B 2 23.723 44.822 -9.703 0.48 26.76 ? C1 RH4 1201 A 1 HETATM 11 C C11 RH4 . . . B 2 29.232 44.833 -9.072 0.48 29.62 ? C11 RH4 1201 A 1 HETATM 12 C C12 RH4 . . . B 2 28.241 45.42 -9.849 0.48 28.16 ? C12 RH4 1201 A 1 HETATM 13 C C2 RH4 . . . B 2 26.778 45.432 -11.885 0.48 30.4 ? C2 RH4 1201 A 1 HETATM 14 C C3 RH4 . . . B 2 27.116 45.436 -13.394 0.48 32.27 ? C3 RH4 1201 A 1 HETATM 15 C C9 RH4 . . . B 2 28.48 43.564 -11.399 0.48 30.32 ? C9 RH4 1201 A 1 HETATM 16 O O1 RH4 . . . B 2 24.974 45.246 -10.314 0.48 28.27 ? O1 RH4 1201 A 1 HETATM 17 O O2 RH4 . . . B 2 29.069 46.074 -14.728 0.48 35.76 ? O2 RH4 1201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #