data_5QXU # _model_server_result.job_id hdJnPGOKbIwTOXFTOvfx8Q _model_server_result.datetime_utc '2024-11-22 22:35:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qxu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 5QXU # _exptl.entry_id 5QXU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.393 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3S,6S)-N~3~-cyclopropyl-N~1~-(cyclopropylmethyl)-3,6-dimethylpiperazine-1,3-dicarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QXU _cell.length_a 80.67 _cell.length_b 80.67 _cell.length_c 140.41 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QXU _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H26 N4 O2' _chem_comp.formula_weight 294.393 _chem_comp.id RJD _chem_comp.mon_nstd_flag . _chem_comp.name (3S,6S)-N~3~-cyclopropyl-N~1~-(cyclopropylmethyl)-3,6-dimethylpiperazine-1,3-dicarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C06 C05 RJD sing 286 n n C13 C05 RJD sing 287 n n C13 N14 RJD sing 288 n n C05 C07 RJD sing 289 n n C05 N04 RJD sing 290 n n O08 C07 RJD doub 291 n n C07 N09 RJD sing 292 n n N09 C10 RJD sing 293 n n N04 C03 RJD sing 294 n n C10 C12 RJD sing 295 n n C10 C11 RJD sing 296 n n C12 C11 RJD sing 297 n n N14 C15 RJD sing 298 n n N14 C02 RJD sing 299 n n O16 C15 RJD doub 300 n n C01 C02 RJD sing 301 n n C03 C02 RJD sing 302 n n C15 N17 RJD sing 303 n n N17 C18 RJD sing 304 n n C18 C19 RJD sing 305 n n C19 C20 RJD sing 306 n n C19 C21 RJD sing 307 n n C20 C21 RJD sing 308 n n C10 H1 RJD sing 309 n n C13 H2 RJD sing 310 n n C13 H3 RJD sing 311 n n C20 H4 RJD sing 312 n n C20 H5 RJD sing 313 n n C21 H6 RJD sing 314 n n C21 H7 RJD sing 315 n n C01 H8 RJD sing 316 n n C01 H9 RJD sing 317 n n C01 H10 RJD sing 318 n n C02 H11 RJD sing 319 n n C03 H12 RJD sing 320 n n C03 H13 RJD sing 321 n n C06 H14 RJD sing 322 n n C06 H15 RJD sing 323 n n C06 H16 RJD sing 324 n n C11 H17 RJD sing 325 n n C11 H18 RJD sing 326 n n C12 H19 RJD sing 327 n n C12 H20 RJD sing 328 n n C18 H21 RJD sing 329 n n C18 H22 RJD sing 330 n n C19 H23 RJD sing 331 n n N04 H24 RJD sing 332 n n N09 H26 RJD sing 333 n n N17 H27 RJD sing 334 n n # _atom_sites.entry_id 5QXU _atom_sites.fract_transf_matrix[1][1] 0.012396 _atom_sites.fract_transf_matrix[1][2] 0.007157 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007122 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 2 SO4 A 1 1202 2 SO4 SO4 . D 3 EDO A 1 1203 3 EDO EDO . E 3 EDO A 1 1204 5 EDO EDO . F 3 EDO A 1 1205 6 EDO EDO . G 4 RJD A 1 1206 1 RJD LIG . H 3 EDO A 1 1207 101 EDO EDO . I 3 EDO A 1 1208 101 EDO EDO . J 5 HOH A 1 1301 158 HOH HOH . J 5 HOH A 2 1302 134 HOH HOH . J 5 HOH A 3 1303 256 HOH HOH . J 5 HOH A 4 1304 32 HOH HOH . J 5 HOH A 5 1305 79 HOH HOH . J 5 HOH A 6 1306 128 HOH HOH . J 5 HOH A 7 1307 59 HOH HOH . J 5 HOH A 8 1308 197 HOH HOH . J 5 HOH A 9 1309 118 HOH HOH . J 5 HOH A 10 1310 162 HOH HOH . J 5 HOH A 11 1311 184 HOH HOH . J 5 HOH A 12 1312 221 HOH HOH . J 5 HOH A 13 1313 129 HOH HOH . J 5 HOH A 14 1314 116 HOH HOH . J 5 HOH A 15 1315 201 HOH HOH . J 5 HOH A 16 1316 144 HOH HOH . J 5 HOH A 17 1317 206 HOH HOH . J 5 HOH A 18 1318 98 HOH HOH . J 5 HOH A 19 1319 68 HOH HOH . J 5 HOH A 20 1320 106 HOH HOH . J 5 HOH A 21 1321 80 HOH HOH . J 5 HOH A 22 1322 111 HOH HOH . J 5 HOH A 23 1323 257 HOH HOH . J 5 HOH A 24 1324 161 HOH HOH . J 5 HOH A 25 1325 43 HOH HOH . J 5 HOH A 26 1326 88 HOH HOH . J 5 HOH A 27 1327 27 HOH HOH . J 5 HOH A 28 1328 87 HOH HOH . J 5 HOH A 29 1329 155 HOH HOH . J 5 HOH A 30 1330 109 HOH HOH . J 5 HOH A 31 1331 9 HOH HOH . J 5 HOH A 32 1332 50 HOH HOH . J 5 HOH A 33 1333 200 HOH HOH . J 5 HOH A 34 1334 23 HOH HOH . J 5 HOH A 35 1335 99 HOH HOH . J 5 HOH A 36 1336 5 HOH HOH . J 5 HOH A 37 1337 253 HOH HOH . J 5 HOH A 38 1338 171 HOH HOH . J 5 HOH A 39 1339 56 HOH HOH . J 5 HOH A 40 1340 189 HOH HOH . J 5 HOH A 41 1341 163 HOH HOH . J 5 HOH A 42 1342 191 HOH HOH . J 5 HOH A 43 1343 51 HOH HOH . J 5 HOH A 44 1344 47 HOH HOH . J 5 HOH A 45 1345 22 HOH HOH . J 5 HOH A 46 1346 28 HOH HOH . J 5 HOH A 47 1347 34 HOH HOH . J 5 HOH A 48 1348 61 HOH HOH . J 5 HOH A 49 1349 33 HOH HOH . J 5 HOH A 50 1350 172 HOH HOH . J 5 HOH A 51 1351 194 HOH HOH . J 5 HOH A 52 1352 19 HOH HOH . J 5 HOH A 53 1353 236 HOH HOH . J 5 HOH A 54 1354 42 HOH HOH . J 5 HOH A 55 1355 75 HOH HOH . J 5 HOH A 56 1356 25 HOH HOH . J 5 HOH A 57 1357 139 HOH HOH . J 5 HOH A 58 1358 13 HOH HOH . J 5 HOH A 59 1359 160 HOH HOH . J 5 HOH A 60 1360 21 HOH HOH . J 5 HOH A 61 1361 17 HOH HOH . J 5 HOH A 62 1362 192 HOH HOH . J 5 HOH A 63 1363 31 HOH HOH . J 5 HOH A 64 1364 1 HOH HOH . J 5 HOH A 65 1365 2 HOH HOH . J 5 HOH A 66 1366 105 HOH HOH . J 5 HOH A 67 1367 141 HOH HOH . J 5 HOH A 68 1368 131 HOH HOH . J 5 HOH A 69 1369 77 HOH HOH . J 5 HOH A 70 1370 165 HOH HOH . J 5 HOH A 71 1371 7 HOH HOH . J 5 HOH A 72 1372 58 HOH HOH . J 5 HOH A 73 1373 261 HOH HOH . J 5 HOH A 74 1374 24 HOH HOH . J 5 HOH A 75 1375 104 HOH HOH . J 5 HOH A 76 1376 46 HOH HOH . J 5 HOH A 77 1377 140 HOH HOH . J 5 HOH A 78 1378 20 HOH HOH . J 5 HOH A 79 1379 16 HOH HOH . J 5 HOH A 80 1380 203 HOH HOH . J 5 HOH A 81 1381 142 HOH HOH . J 5 HOH A 82 1382 190 HOH HOH . J 5 HOH A 83 1383 64 HOH HOH . J 5 HOH A 84 1384 260 HOH HOH . J 5 HOH A 85 1385 92 HOH HOH . J 5 HOH A 86 1386 70 HOH HOH . J 5 HOH A 87 1387 36 HOH HOH . J 5 HOH A 88 1388 40 HOH HOH . J 5 HOH A 89 1389 187 HOH HOH . J 5 HOH A 90 1390 85 HOH HOH . J 5 HOH A 91 1391 52 HOH HOH . J 5 HOH A 92 1392 120 HOH HOH . J 5 HOH A 93 1393 15 HOH HOH . J 5 HOH A 94 1394 154 HOH HOH . J 5 HOH A 95 1395 48 HOH HOH . J 5 HOH A 96 1396 6 HOH HOH . J 5 HOH A 97 1397 30 HOH HOH . J 5 HOH A 98 1398 83 HOH HOH . J 5 HOH A 99 1399 216 HOH HOH . J 5 HOH A 100 1400 62 HOH HOH . J 5 HOH A 101 1401 82 HOH HOH . J 5 HOH A 102 1402 102 HOH HOH . J 5 HOH A 103 1403 45 HOH HOH . J 5 HOH A 104 1404 38 HOH HOH . J 5 HOH A 105 1405 147 HOH HOH . J 5 HOH A 106 1406 3 HOH HOH . J 5 HOH A 107 1407 4 HOH HOH . J 5 HOH A 108 1408 49 HOH HOH . J 5 HOH A 109 1409 12 HOH HOH . J 5 HOH A 110 1410 176 HOH HOH . J 5 HOH A 111 1411 76 HOH HOH . J 5 HOH A 112 1412 130 HOH HOH . J 5 HOH A 113 1413 89 HOH HOH . J 5 HOH A 114 1414 175 HOH HOH . J 5 HOH A 115 1415 29 HOH HOH . J 5 HOH A 116 1416 53 HOH HOH . J 5 HOH A 117 1417 73 HOH HOH . J 5 HOH A 118 1418 209 HOH HOH . J 5 HOH A 119 1419 54 HOH HOH . J 5 HOH A 120 1420 86 HOH HOH . J 5 HOH A 121 1421 207 HOH HOH . J 5 HOH A 122 1422 132 HOH HOH . J 5 HOH A 123 1423 18 HOH HOH . J 5 HOH A 124 1424 39 HOH HOH . J 5 HOH A 125 1425 247 HOH HOH . J 5 HOH A 126 1426 72 HOH HOH . J 5 HOH A 127 1427 90 HOH HOH . J 5 HOH A 128 1428 107 HOH HOH . J 5 HOH A 129 1429 237 HOH HOH . J 5 HOH A 130 1430 10 HOH HOH . J 5 HOH A 131 1431 101 HOH HOH . J 5 HOH A 132 1432 215 HOH HOH . J 5 HOH A 133 1433 11 HOH HOH . J 5 HOH A 134 1434 95 HOH HOH . J 5 HOH A 135 1435 67 HOH HOH . J 5 HOH A 136 1436 78 HOH HOH . J 5 HOH A 137 1437 254 HOH HOH . J 5 HOH A 138 1438 180 HOH HOH . J 5 HOH A 139 1439 26 HOH HOH . J 5 HOH A 140 1440 179 HOH HOH . J 5 HOH A 141 1441 196 HOH HOH . J 5 HOH A 142 1442 123 HOH HOH . J 5 HOH A 143 1443 122 HOH HOH . J 5 HOH A 144 1444 97 HOH HOH . J 5 HOH A 145 1445 262 HOH HOH . J 5 HOH A 146 1446 230 HOH HOH . J 5 HOH A 147 1447 258 HOH HOH . J 5 HOH A 148 1448 188 HOH HOH . J 5 HOH A 149 1449 240 HOH HOH . J 5 HOH A 150 1450 178 HOH HOH . J 5 HOH A 151 1451 199 HOH HOH . J 5 HOH A 152 1452 57 HOH HOH . J 5 HOH A 153 1453 234 HOH HOH . J 5 HOH A 154 1454 145 HOH HOH . J 5 HOH A 155 1455 96 HOH HOH . J 5 HOH A 156 1456 246 HOH HOH . J 5 HOH A 157 1457 93 HOH HOH . J 5 HOH A 158 1458 181 HOH HOH . J 5 HOH A 159 1459 41 HOH HOH . J 5 HOH A 160 1460 143 HOH HOH . J 5 HOH A 161 1461 100 HOH HOH . J 5 HOH A 162 1462 81 HOH HOH . J 5 HOH A 163 1463 263 HOH HOH . J 5 HOH A 164 1464 114 HOH HOH . J 5 HOH A 165 1465 224 HOH HOH . J 5 HOH A 166 1466 225 HOH HOH . J 5 HOH A 167 1467 164 HOH HOH . J 5 HOH A 168 1468 186 HOH HOH . J 5 HOH A 169 1469 152 HOH HOH . J 5 HOH A 170 1470 60 HOH HOH . J 5 HOH A 171 1471 69 HOH HOH . J 5 HOH A 172 1472 135 HOH HOH . J 5 HOH A 173 1473 167 HOH HOH . J 5 HOH A 174 1474 220 HOH HOH . J 5 HOH A 175 1475 259 HOH HOH . J 5 HOH A 176 1476 248 HOH HOH . J 5 HOH A 177 1477 91 HOH HOH . J 5 HOH A 178 1478 217 HOH HOH . J 5 HOH A 179 1479 115 HOH HOH . J 5 HOH A 180 1480 250 HOH HOH . J 5 HOH A 181 1481 150 HOH HOH . J 5 HOH A 182 1482 37 HOH HOH . J 5 HOH A 183 1483 159 HOH HOH . J 5 HOH A 184 1484 151 HOH HOH . J 5 HOH A 185 1485 66 HOH HOH . J 5 HOH A 186 1486 112 HOH HOH . J 5 HOH A 187 1487 210 HOH HOH . J 5 HOH A 188 1488 103 HOH HOH . J 5 HOH A 189 1489 244 HOH HOH . J 5 HOH A 190 1490 84 HOH HOH . J 5 HOH A 191 1491 137 HOH HOH . J 5 HOH A 192 1492 8 HOH HOH . J 5 HOH A 193 1493 157 HOH HOH . J 5 HOH A 194 1494 63 HOH HOH . J 5 HOH A 195 1495 146 HOH HOH . J 5 HOH A 196 1496 233 HOH HOH . J 5 HOH A 197 1497 119 HOH HOH . J 5 HOH A 198 1498 149 HOH HOH . J 5 HOH A 199 1499 174 HOH HOH . J 5 HOH A 200 1500 168 HOH HOH . J 5 HOH A 201 1501 205 HOH HOH . J 5 HOH A 202 1502 44 HOH HOH . J 5 HOH A 203 1503 71 HOH HOH . J 5 HOH A 204 1504 74 HOH HOH . J 5 HOH A 205 1505 249 HOH HOH . J 5 HOH A 206 1506 125 HOH HOH . J 5 HOH A 207 1507 127 HOH HOH . J 5 HOH A 208 1508 185 HOH HOH . J 5 HOH A 209 1509 148 HOH HOH . J 5 HOH A 210 1510 35 HOH HOH . J 5 HOH A 211 1511 251 HOH HOH . J 5 HOH A 212 1512 211 HOH HOH . J 5 HOH A 213 1513 117 HOH HOH . J 5 HOH A 214 1514 245 HOH HOH . J 5 HOH A 215 1515 183 HOH HOH . J 5 HOH A 216 1516 255 HOH HOH . J 5 HOH A 217 1517 219 HOH HOH . J 5 HOH A 218 1518 213 HOH HOH . J 5 HOH A 219 1519 121 HOH HOH . J 5 HOH A 220 1520 136 HOH HOH . J 5 HOH A 221 1521 214 HOH HOH . J 5 HOH A 222 1522 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RJD . . . G 4 29.743 48.349 -11.003 0.65 31.68 ? C10 RJD 1206 A 1 HETATM 2 C C13 RJD . . . G 4 25.55 46.986 -11.509 0.65 23.2 ? C13 RJD 1206 A 1 HETATM 3 C C15 RJD . . . G 4 25.528 48.423 -9.409 0.65 23.82 ? C15 RJD 1206 A 1 HETATM 4 C C20 RJD . . . G 4 24.126 49.654 -5.201 0.65 25.9 ? C20 RJD 1206 A 1 HETATM 5 C C21 RJD . . . G 4 25.003 50.894 -5.043 0.65 27.09 ? C21 RJD 1206 A 1 HETATM 6 C C01 RJD . . . G 4 23.552 45.461 -9.739 0.65 21.57 ? C01 RJD 1206 A 1 HETATM 7 C C02 RJD . . . G 4 24.968 45.914 -9.382 0.65 22.58 ? C02 RJD 1206 A 1 HETATM 8 C C03 RJD . . . G 4 25.977 44.761 -9.702 0.65 22.79 ? C03 RJD 1206 A 1 HETATM 9 C C05 RJD . . . G 4 26.646 45.953 -11.463 0.65 24.87 ? C05 RJD 1206 A 1 HETATM 10 C C06 RJD . . . G 4 26.7 45.753 -13.043 0.65 24.15 ? C06 RJD 1206 A 1 HETATM 11 C C07 RJD . . . G 4 28.119 46.398 -11.371 0.65 27.64 ? C07 RJD 1206 A 1 HETATM 12 C C11 RJD . . . G 4 30.008 49.009 -9.659 0.65 32.67 ? C11 RJD 1206 A 1 HETATM 13 C C12 RJD . . . G 4 29.82 49.868 -10.916 0.65 32.54 ? C12 RJD 1206 A 1 HETATM 14 C C18 RJD . . . G 4 25.474 49.869 -7.319 0.65 26.05 ? C18 RJD 1206 A 1 HETATM 15 C C19 RJD . . . G 4 25.518 49.694 -5.829 0.65 25.84 ? C19 RJD 1206 A 1 HETATM 16 N N04 RJD . . . G 4 26.258 44.66 -11.124 0.65 23.36 ? N04 RJD 1206 A 1 HETATM 17 N N09 RJD . . . G 4 28.382 47.836 -11.13 0.65 30.39 ? N09 RJD 1206 A 1 HETATM 18 N N14 RJD . . . G 4 25.334 47.165 -10.069 0.65 22.16 ? N14 RJD 1206 A 1 HETATM 19 N N17 RJD . . . G 4 25.283 48.556 -7.967 0.65 25.11 ? N17 RJD 1206 A 1 HETATM 20 O O08 RJD . . . G 4 29.004 45.618 -11.428 0.65 28.92 ? O08 RJD 1206 A 1 HETATM 21 O O16 RJD . . . G 4 25.867 49.341 -10.069 0.65 24.51 ? O16 RJD 1206 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #