data_5QXW # _model_server_result.job_id Ee_ISeA99NiL-6dwVRZkbg _model_server_result.datetime_utc '2024-11-15 06:06:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qxw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1206}' # _entry.id 5QXW # _exptl.entry_id 5QXW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.389 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5R)-N-benzyl-5-ethyl-1-methyl-1,4-diazepane-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QXW _cell.length_a 80.19 _cell.length_b 80.19 _cell.length_c 139.193 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QXW _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H25 N3 O' _chem_comp.formula_weight 275.389 _chem_comp.id RJJ _chem_comp.mon_nstd_flag . _chem_comp.name (5R)-N-benzyl-5-ethyl-1-methyl-1,4-diazepane-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C13 RJJ doub 286 n y C12 C11 RJJ sing 287 n y C13 C08 RJJ sing 288 n y C11 C10 RJJ doub 289 n y N20 C19 RJJ sing 290 n n N20 C03 RJJ sing 291 n n C08 C09 RJJ doub 292 n y C08 C07 RJJ sing 293 n n C10 C09 RJJ sing 294 n y C19 C18 RJJ sing 295 n n C02 C03 RJJ sing 296 n n C02 C01 RJJ sing 297 n n N06 C07 RJJ sing 298 n n N06 C04 RJJ sing 299 n n C03 C04 RJJ sing 300 n n C03 C14 RJJ sing 301 n n C18 N16 RJJ sing 302 n n C04 O05 RJJ doub 303 n n C14 C15 RJJ sing 304 n n N16 C15 RJJ sing 305 n n N16 C17 RJJ sing 306 n n C10 H1 RJJ sing 307 n n C13 H2 RJJ sing 308 n n C15 H3 RJJ sing 309 n n C15 H4 RJJ sing 310 n n C17 H5 RJJ sing 311 n n C17 H6 RJJ sing 312 n n C17 H7 RJJ sing 313 n n C01 H8 RJJ sing 314 n n C01 H9 RJJ sing 315 n n C01 H10 RJJ sing 316 n n C02 H11 RJJ sing 317 n n C02 H12 RJJ sing 318 n n C07 H13 RJJ sing 319 n n C07 H14 RJJ sing 320 n n C09 H15 RJJ sing 321 n n C11 H16 RJJ sing 322 n n C12 H17 RJJ sing 323 n n C14 H18 RJJ sing 324 n n C14 H19 RJJ sing 325 n n C18 H20 RJJ sing 326 n n C18 H21 RJJ sing 327 n n C19 H22 RJJ sing 328 n n C19 H23 RJJ sing 329 n n N06 H24 RJJ sing 330 n n N20 H26 RJJ sing 331 n n # _atom_sites.entry_id 5QXW _atom_sites.fract_transf_matrix[1][1] 0.01247 _atom_sites.fract_transf_matrix[1][2] 0.0072 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 1201 1 SO4 SO4 . C 2 SO4 A 1 1202 2 SO4 SO4 . D 3 EDO A 1 1203 3 EDO EDO . E 3 EDO A 1 1204 5 EDO EDO . F 3 EDO A 1 1205 6 EDO EDO . G 4 RJJ A 1 1206 1 RJJ LIG . H 3 EDO A 1 1207 101 EDO EDO . I 5 HOH A 1 1301 134 HOH HOH . I 5 HOH A 2 1302 158 HOH HOH . I 5 HOH A 3 1303 128 HOH HOH . I 5 HOH A 4 1304 256 HOH HOH . I 5 HOH A 5 1305 59 HOH HOH . I 5 HOH A 6 1306 184 HOH HOH . I 5 HOH A 7 1307 118 HOH HOH . I 5 HOH A 8 1308 107 HOH HOH . I 5 HOH A 9 1309 98 HOH HOH . I 5 HOH A 10 1310 79 HOH HOH . I 5 HOH A 11 1311 56 HOH HOH . I 5 HOH A 12 1312 172 HOH HOH . I 5 HOH A 13 1313 200 HOH HOH . I 5 HOH A 14 1314 129 HOH HOH . I 5 HOH A 15 1315 68 HOH HOH . I 5 HOH A 16 1316 27 HOH HOH . I 5 HOH A 17 1317 32 HOH HOH . I 5 HOH A 18 1318 50 HOH HOH . I 5 HOH A 19 1319 34 HOH HOH . I 5 HOH A 20 1320 64 HOH HOH . I 5 HOH A 21 1321 191 HOH HOH . I 5 HOH A 22 1322 5 HOH HOH . I 5 HOH A 23 1323 87 HOH HOH . I 5 HOH A 24 1324 194 HOH HOH . I 5 HOH A 25 1325 20 HOH HOH . I 5 HOH A 26 1326 23 HOH HOH . I 5 HOH A 27 1327 61 HOH HOH . I 5 HOH A 28 1328 189 HOH HOH . I 5 HOH A 29 1329 221 HOH HOH . I 5 HOH A 30 1330 215 HOH HOH . I 5 HOH A 31 1331 258 HOH HOH . I 5 HOH A 32 1332 28 HOH HOH . I 5 HOH A 33 1333 16 HOH HOH . I 5 HOH A 34 1334 109 HOH HOH . I 5 HOH A 35 1335 163 HOH HOH . I 5 HOH A 36 1336 106 HOH HOH . I 5 HOH A 37 1337 149 HOH HOH . I 5 HOH A 38 1338 144 HOH HOH . I 5 HOH A 39 1339 25 HOH HOH . I 5 HOH A 40 1340 13 HOH HOH . I 5 HOH A 41 1341 58 HOH HOH . I 5 HOH A 42 1342 19 HOH HOH . I 5 HOH A 43 1343 94 HOH HOH . I 5 HOH A 44 1344 33 HOH HOH . I 5 HOH A 45 1345 75 HOH HOH . I 5 HOH A 46 1346 42 HOH HOH . I 5 HOH A 47 1347 31 HOH HOH . I 5 HOH A 48 1348 187 HOH HOH . I 5 HOH A 49 1349 101 HOH HOH . I 5 HOH A 50 1350 17 HOH HOH . I 5 HOH A 51 1351 77 HOH HOH . I 5 HOH A 52 1352 30 HOH HOH . I 5 HOH A 53 1353 22 HOH HOH . I 5 HOH A 54 1354 7 HOH HOH . I 5 HOH A 55 1355 48 HOH HOH . I 5 HOH A 56 1356 201 HOH HOH . I 5 HOH A 57 1357 1 HOH HOH . I 5 HOH A 58 1358 2 HOH HOH . I 5 HOH A 59 1359 131 HOH HOH . I 5 HOH A 60 1360 88 HOH HOH . I 5 HOH A 61 1361 14 HOH HOH . I 5 HOH A 62 1362 259 HOH HOH . I 5 HOH A 63 1363 154 HOH HOH . I 5 HOH A 64 1364 197 HOH HOH . I 5 HOH A 65 1365 111 HOH HOH . I 5 HOH A 66 1366 80 HOH HOH . I 5 HOH A 67 1367 47 HOH HOH . I 5 HOH A 68 1368 175 HOH HOH . I 5 HOH A 69 1369 236 HOH HOH . I 5 HOH A 70 1370 9 HOH HOH . I 5 HOH A 71 1371 203 HOH HOH . I 5 HOH A 72 1372 24 HOH HOH . I 5 HOH A 73 1373 165 HOH HOH . I 5 HOH A 74 1374 142 HOH HOH . I 5 HOH A 75 1375 247 HOH HOH . I 5 HOH A 76 1376 176 HOH HOH . I 5 HOH A 77 1377 21 HOH HOH . I 5 HOH A 78 1378 99 HOH HOH . I 5 HOH A 79 1379 160 HOH HOH . I 5 HOH A 80 1380 120 HOH HOH . I 5 HOH A 81 1381 46 HOH HOH . I 5 HOH A 82 1382 155 HOH HOH . I 5 HOH A 83 1383 147 HOH HOH . I 5 HOH A 84 1384 253 HOH HOH . I 5 HOH A 85 1385 36 HOH HOH . I 5 HOH A 86 1386 70 HOH HOH . I 5 HOH A 87 1387 252 HOH HOH . I 5 HOH A 88 1388 76 HOH HOH . I 5 HOH A 89 1389 6 HOH HOH . I 5 HOH A 90 1390 83 HOH HOH . I 5 HOH A 91 1391 43 HOH HOH . I 5 HOH A 92 1392 55 HOH HOH . I 5 HOH A 93 1393 12 HOH HOH . I 5 HOH A 94 1394 139 HOH HOH . I 5 HOH A 95 1395 141 HOH HOH . I 5 HOH A 96 1396 62 HOH HOH . I 5 HOH A 97 1397 207 HOH HOH . I 5 HOH A 98 1398 100 HOH HOH . I 5 HOH A 99 1399 52 HOH HOH . I 5 HOH A 100 1400 29 HOH HOH . I 5 HOH A 101 1401 102 HOH HOH . I 5 HOH A 102 1402 54 HOH HOH . I 5 HOH A 103 1403 66 HOH HOH . I 5 HOH A 104 1404 51 HOH HOH . I 5 HOH A 105 1405 113 HOH HOH . I 5 HOH A 106 1406 179 HOH HOH . I 5 HOH A 107 1407 53 HOH HOH . I 5 HOH A 108 1408 73 HOH HOH . I 5 HOH A 109 1409 67 HOH HOH . I 5 HOH A 110 1410 92 HOH HOH . I 5 HOH A 111 1411 82 HOH HOH . I 5 HOH A 112 1412 78 HOH HOH . I 5 HOH A 113 1413 206 HOH HOH . I 5 HOH A 114 1414 3 HOH HOH . I 5 HOH A 115 1415 15 HOH HOH . I 5 HOH A 116 1416 11 HOH HOH . I 5 HOH A 117 1417 4 HOH HOH . I 5 HOH A 118 1418 45 HOH HOH . I 5 HOH A 119 1419 72 HOH HOH . I 5 HOH A 120 1420 85 HOH HOH . I 5 HOH A 121 1421 216 HOH HOH . I 5 HOH A 122 1422 240 HOH HOH . I 5 HOH A 123 1423 162 HOH HOH . I 5 HOH A 124 1424 132 HOH HOH . I 5 HOH A 125 1425 57 HOH HOH . I 5 HOH A 126 1426 18 HOH HOH . I 5 HOH A 127 1427 140 HOH HOH . I 5 HOH A 128 1428 130 HOH HOH . I 5 HOH A 129 1429 260 HOH HOH . I 5 HOH A 130 1430 116 HOH HOH . I 5 HOH A 131 1431 97 HOH HOH . I 5 HOH A 132 1432 90 HOH HOH . I 5 HOH A 133 1433 178 HOH HOH . I 5 HOH A 134 1434 124 HOH HOH . I 5 HOH A 135 1435 10 HOH HOH . I 5 HOH A 136 1436 49 HOH HOH . I 5 HOH A 137 1437 123 HOH HOH . I 5 HOH A 138 1438 26 HOH HOH . I 5 HOH A 139 1439 161 HOH HOH . I 5 HOH A 140 1440 180 HOH HOH . I 5 HOH A 141 1441 164 HOH HOH . I 5 HOH A 142 1442 209 HOH HOH . I 5 HOH A 143 1443 249 HOH HOH . I 5 HOH A 144 1444 95 HOH HOH . I 5 HOH A 145 1445 199 HOH HOH . I 5 HOH A 146 1446 188 HOH HOH . I 5 HOH A 147 1447 196 HOH HOH . I 5 HOH A 148 1448 114 HOH HOH . I 5 HOH A 149 1449 246 HOH HOH . I 5 HOH A 150 1450 96 HOH HOH . I 5 HOH A 151 1451 234 HOH HOH . I 5 HOH A 152 1452 254 HOH HOH . I 5 HOH A 153 1453 145 HOH HOH . I 5 HOH A 154 1454 105 HOH HOH . I 5 HOH A 155 1455 38 HOH HOH . I 5 HOH A 156 1456 39 HOH HOH . I 5 HOH A 157 1457 86 HOH HOH . I 5 HOH A 158 1458 89 HOH HOH . I 5 HOH A 159 1459 220 HOH HOH . I 5 HOH A 160 1460 81 HOH HOH . I 5 HOH A 161 1461 41 HOH HOH . I 5 HOH A 162 1462 122 HOH HOH . I 5 HOH A 163 1463 93 HOH HOH . I 5 HOH A 164 1464 115 HOH HOH . I 5 HOH A 165 1465 91 HOH HOH . I 5 HOH A 166 1466 110 HOH HOH . I 5 HOH A 167 1467 237 HOH HOH . I 5 HOH A 168 1468 152 HOH HOH . I 5 HOH A 169 1469 210 HOH HOH . I 5 HOH A 170 1470 186 HOH HOH . I 5 HOH A 171 1471 60 HOH HOH . I 5 HOH A 172 1472 217 HOH HOH . I 5 HOH A 173 1473 174 HOH HOH . I 5 HOH A 174 1474 177 HOH HOH . I 5 HOH A 175 1475 224 HOH HOH . I 5 HOH A 176 1476 167 HOH HOH . I 5 HOH A 177 1477 151 HOH HOH . I 5 HOH A 178 1478 257 HOH HOH . I 5 HOH A 179 1479 159 HOH HOH . I 5 HOH A 180 1480 225 HOH HOH . I 5 HOH A 181 1481 181 HOH HOH . I 5 HOH A 182 1482 150 HOH HOH . I 5 HOH A 183 1483 37 HOH HOH . I 5 HOH A 184 1484 84 HOH HOH . I 5 HOH A 185 1485 157 HOH HOH . I 5 HOH A 186 1486 8 HOH HOH . I 5 HOH A 187 1487 127 HOH HOH . I 5 HOH A 188 1488 243 HOH HOH . I 5 HOH A 189 1489 112 HOH HOH . I 5 HOH A 190 1490 103 HOH HOH . I 5 HOH A 191 1491 233 HOH HOH . I 5 HOH A 192 1492 125 HOH HOH . I 5 HOH A 193 1493 44 HOH HOH . I 5 HOH A 194 1494 250 HOH HOH . I 5 HOH A 195 1495 146 HOH HOH . I 5 HOH A 196 1496 71 HOH HOH . I 5 HOH A 197 1497 137 HOH HOH . I 5 HOH A 198 1498 148 HOH HOH . I 5 HOH A 199 1499 119 HOH HOH . I 5 HOH A 200 1500 74 HOH HOH . I 5 HOH A 201 1501 168 HOH HOH . I 5 HOH A 202 1502 251 HOH HOH . I 5 HOH A 203 1503 205 HOH HOH . I 5 HOH A 204 1504 248 HOH HOH . I 5 HOH A 205 1505 255 HOH HOH . I 5 HOH A 206 1506 63 HOH HOH . I 5 HOH A 207 1507 35 HOH HOH . I 5 HOH A 208 1508 211 HOH HOH . I 5 HOH A 209 1509 244 HOH HOH . I 5 HOH A 210 1510 183 HOH HOH . I 5 HOH A 211 1511 214 HOH HOH . I 5 HOH A 212 1512 219 HOH HOH . I 5 HOH A 213 1513 213 HOH HOH . I 5 HOH A 214 1514 121 HOH HOH . I 5 HOH A 215 1515 202 HOH HOH . I 5 HOH A 216 1516 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RJJ . . . G 4 16.275 49.033 2.94 0.49 25.07 ? C10 RJJ 1206 A 1 HETATM 2 C C13 RJJ . . . G 4 18.31 50.355 1.478 0.49 25.88 ? C13 RJJ 1206 A 1 HETATM 3 C C15 RJJ . . . G 4 23.158 49.504 5.973 0.49 45.92 ? C15 RJJ 1206 A 1 HETATM 4 C C17 RJJ . . . G 4 24.9 48.082 6.23 0.49 45.87 ? C17 RJJ 1206 A 1 HETATM 5 C C01 RJJ . . . G 4 24.665 53.124 3.91 0.49 42.68 ? C01 RJJ 1206 A 1 HETATM 6 C C02 RJJ . . . G 4 23.234 52.707 3.612 0.49 44.87 ? C02 RJJ 1206 A 1 HETATM 7 C C03 RJJ . . . G 4 22.829 51.244 4.028 0.49 44.48 ? C03 RJJ 1206 A 1 HETATM 8 C C04 RJJ . . . G 4 21.29 51.237 4.289 0.49 41.73 ? C04 RJJ 1206 A 1 HETATM 9 C C07 RJJ . . . G 4 18.935 51.751 3.589 0.49 31.33 ? C07 RJJ 1206 A 1 HETATM 10 C C08 RJJ . . . G 4 18.097 50.648 2.848 0.49 28.12 ? C08 RJJ 1206 A 1 HETATM 11 C C09 RJJ . . . G 4 17.067 49.994 3.566 0.49 25.85 ? C09 RJJ 1206 A 1 HETATM 12 C C11 RJJ . . . G 4 16.487 48.722 1.561 0.49 25.08 ? C11 RJJ 1206 A 1 HETATM 13 C C12 RJJ . . . G 4 17.509 49.397 0.842 0.49 25.22 ? C12 RJJ 1206 A 1 HETATM 14 C C14 RJJ . . . G 4 23.54 50.888 5.367 0.49 45.55 ? C14 RJJ 1206 A 1 HETATM 15 C C18 RJJ . . . G 4 24.112 48.423 4.133 0.49 47.31 ? C18 RJJ 1206 A 1 HETATM 16 C C19 RJJ . . . G 4 23.024 48.928 3.181 0.49 45.83 ? C19 RJJ 1206 A 1 HETATM 17 N N06 RJJ . . . G 4 20.367 51.748 3.285 0.49 36.43 ? N06 RJJ 1206 A 1 HETATM 18 N N16 RJJ . . . G 4 23.847 48.453 5.46 0.49 46.66 ? N16 RJJ 1206 A 1 HETATM 19 N N20 RJJ . . . G 4 23.12 50.378 2.908 0.49 45.65 ? N20 RJJ 1206 A 1 HETATM 20 O O05 RJJ . . . G 4 20.836 50.834 5.294 0.49 43.65 ? O05 RJJ 1206 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #