data_5QXX # _model_server_result.job_id HRlkldLL4JBEiRcYaUM9HQ _model_server_result.datetime_utc '2024-11-22 16:51:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qxx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5QXX # _exptl.entry_id 5QXX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 287.4 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-N-benzyl-1,7-diethyl-2,3,6,7-tetrahydro-1H-1,4-diazepine-7-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5QXX _cell.length_a 80.223 _cell.length_b 80.223 _cell.length_c 139.288 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QXX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H25 N3 O' _chem_comp.formula_weight 287.4 _chem_comp.id RK1 _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-N-benzyl-1,7-diethyl-2,3,6,7-tetrahydro-1H-1,4-diazepine-7-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 RK1 sing 286 n n C02 N03 RK1 sing 287 n n C05 C04 RK1 sing 288 n n C05 N06 RK1 sing 289 n n C04 N03 RK1 sing 290 n n N03 C09 RK1 sing 291 n n N06 C07 RK1 doub 292 n n C11 C10 RK1 sing 293 n n C09 C08 RK1 sing 294 n n C09 C10 RK1 sing 295 n n C09 C12 RK1 sing 296 n n C08 C07 RK1 sing 297 n n N14 C12 RK1 sing 298 n n N14 C15 RK1 sing 299 n n C12 O13 RK1 doub 300 n n C18 C19 RK1 doub 301 n y C18 C17 RK1 sing 302 n y C19 C20 RK1 sing 303 n y C17 C16 RK1 doub 304 n y C20 C21 RK1 doub 305 n y C16 C21 RK1 sing 306 n y C16 C15 RK1 sing 307 n n C10 H1 RK1 sing 308 n n C10 H2 RK1 sing 309 n n C15 H3 RK1 sing 310 n n C15 H4 RK1 sing 311 n n C17 H5 RK1 sing 312 n n C20 H6 RK1 sing 313 n n C21 H7 RK1 sing 314 n n C01 H8 RK1 sing 315 n n C01 H9 RK1 sing 316 n n C01 H10 RK1 sing 317 n n C02 H11 RK1 sing 318 n n C02 H12 RK1 sing 319 n n C04 H13 RK1 sing 320 n n C04 H14 RK1 sing 321 n n C05 H15 RK1 sing 322 n n C05 H16 RK1 sing 323 n n C07 H17 RK1 sing 324 n n C08 H18 RK1 sing 325 n n C08 H19 RK1 sing 326 n n C11 H20 RK1 sing 327 n n C11 H21 RK1 sing 328 n n C11 H22 RK1 sing 329 n n C18 H23 RK1 sing 330 n n C19 H24 RK1 sing 331 n n N14 H26 RK1 sing 332 n n # _atom_sites.entry_id 5QXX _atom_sites.fract_transf_matrix[1][1] 0.012465 _atom_sites.fract_transf_matrix[1][2] 0.007197 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014394 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007179 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RK1 A 1 1201 1201 RK1 LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 4 EDO A 1 1204 3 EDO EDO . F 4 EDO A 1 1205 6 EDO EDO . G 5 HOH A 1 1301 161 HOH HOH . G 5 HOH A 2 1302 32 HOH HOH . G 5 HOH A 3 1303 158 HOH HOH . G 5 HOH A 4 1304 134 HOH HOH . G 5 HOH A 5 1305 256 HOH HOH . G 5 HOH A 6 1306 184 HOH HOH . G 5 HOH A 7 1307 128 HOH HOH . G 5 HOH A 8 1308 118 HOH HOH . G 5 HOH A 9 1309 68 HOH HOH . G 5 HOH A 10 1310 79 HOH HOH . G 5 HOH A 11 1311 106 HOH HOH . G 5 HOH A 12 1312 98 HOH HOH . G 5 HOH A 13 1313 144 HOH HOH . G 5 HOH A 14 1314 200 HOH HOH . G 5 HOH A 15 1315 194 HOH HOH . G 5 HOH A 16 1316 50 HOH HOH . G 5 HOH A 17 1317 129 HOH HOH . G 5 HOH A 18 1318 111 HOH HOH . G 5 HOH A 19 1319 191 HOH HOH . G 5 HOH A 20 1320 5 HOH HOH . G 5 HOH A 21 1321 201 HOH HOH . G 5 HOH A 22 1322 64 HOH HOH . G 5 HOH A 23 1323 113 HOH HOH . G 5 HOH A 24 1324 258 HOH HOH . G 5 HOH A 25 1325 27 HOH HOH . G 5 HOH A 26 1326 59 HOH HOH . G 5 HOH A 27 1327 246 HOH HOH . G 5 HOH A 28 1328 109 HOH HOH . G 5 HOH A 29 1329 203 HOH HOH . G 5 HOH A 30 1330 187 HOH HOH . G 5 HOH A 31 1331 163 HOH HOH . G 5 HOH A 32 1332 28 HOH HOH . G 5 HOH A 33 1333 87 HOH HOH . G 5 HOH A 34 1334 34 HOH HOH . G 5 HOH A 35 1335 23 HOH HOH . G 5 HOH A 36 1336 16 HOH HOH . G 5 HOH A 37 1337 20 HOH HOH . G 5 HOH A 38 1338 13 HOH HOH . G 5 HOH A 39 1339 132 HOH HOH . G 5 HOH A 40 1340 171 HOH HOH . G 5 HOH A 41 1341 88 HOH HOH . G 5 HOH A 42 1342 100 HOH HOH . G 5 HOH A 43 1343 75 HOH HOH . G 5 HOH A 44 1344 77 HOH HOH . G 5 HOH A 45 1345 162 HOH HOH . G 5 HOH A 46 1346 9 HOH HOH . G 5 HOH A 47 1347 55 HOH HOH . G 5 HOH A 48 1348 2 HOH HOH . G 5 HOH A 49 1349 61 HOH HOH . G 5 HOH A 50 1350 189 HOH HOH . G 5 HOH A 51 1351 31 HOH HOH . G 5 HOH A 52 1352 94 HOH HOH . G 5 HOH A 53 1353 80 HOH HOH . G 5 HOH A 54 1354 17 HOH HOH . G 5 HOH A 55 1355 25 HOH HOH . G 5 HOH A 56 1356 165 HOH HOH . G 5 HOH A 57 1357 56 HOH HOH . G 5 HOH A 58 1358 76 HOH HOH . G 5 HOH A 59 1359 21 HOH HOH . G 5 HOH A 60 1360 19 HOH HOH . G 5 HOH A 61 1361 33 HOH HOH . G 5 HOH A 62 1362 14 HOH HOH . G 5 HOH A 63 1363 99 HOH HOH . G 5 HOH A 64 1364 177 HOH HOH . G 5 HOH A 65 1365 22 HOH HOH . G 5 HOH A 66 1366 160 HOH HOH . G 5 HOH A 67 1367 131 HOH HOH . G 5 HOH A 68 1368 24 HOH HOH . G 5 HOH A 69 1369 42 HOH HOH . G 5 HOH A 70 1370 236 HOH HOH . G 5 HOH A 71 1371 58 HOH HOH . G 5 HOH A 72 1372 47 HOH HOH . G 5 HOH A 73 1373 221 HOH HOH . G 5 HOH A 74 1374 40 HOH HOH . G 5 HOH A 75 1375 46 HOH HOH . G 5 HOH A 76 1376 89 HOH HOH . G 5 HOH A 77 1377 43 HOH HOH . G 5 HOH A 78 1378 7 HOH HOH . G 5 HOH A 79 1379 1 HOH HOH . G 5 HOH A 80 1380 142 HOH HOH . G 5 HOH A 81 1381 52 HOH HOH . G 5 HOH A 82 1382 175 HOH HOH . G 5 HOH A 83 1383 54 HOH HOH . G 5 HOH A 84 1384 48 HOH HOH . G 5 HOH A 85 1385 120 HOH HOH . G 5 HOH A 86 1386 67 HOH HOH . G 5 HOH A 87 1387 29 HOH HOH . G 5 HOH A 88 1388 139 HOH HOH . G 5 HOH A 89 1389 140 HOH HOH . G 5 HOH A 90 1390 154 HOH HOH . G 5 HOH A 91 1391 207 HOH HOH . G 5 HOH A 92 1392 6 HOH HOH . G 5 HOH A 93 1393 176 HOH HOH . G 5 HOH A 94 1394 70 HOH HOH . G 5 HOH A 95 1395 45 HOH HOH . G 5 HOH A 96 1396 92 HOH HOH . G 5 HOH A 97 1397 30 HOH HOH . G 5 HOH A 98 1398 206 HOH HOH . G 5 HOH A 99 1399 12 HOH HOH . G 5 HOH A 100 1400 102 HOH HOH . G 5 HOH A 101 1401 73 HOH HOH . G 5 HOH A 102 1402 4 HOH HOH . G 5 HOH A 103 1403 172 HOH HOH . G 5 HOH A 104 1404 155 HOH HOH . G 5 HOH A 105 1405 197 HOH HOH . G 5 HOH A 106 1406 36 HOH HOH . G 5 HOH A 107 1407 107 HOH HOH . G 5 HOH A 108 1408 247 HOH HOH . G 5 HOH A 109 1409 85 HOH HOH . G 5 HOH A 110 1410 15 HOH HOH . G 5 HOH A 111 1411 253 HOH HOH . G 5 HOH A 112 1412 147 HOH HOH . G 5 HOH A 113 1413 104 HOH HOH . G 5 HOH A 114 1414 3 HOH HOH . G 5 HOH A 115 1415 141 HOH HOH . G 5 HOH A 116 1416 216 HOH HOH . G 5 HOH A 117 1417 124 HOH HOH . G 5 HOH A 118 1418 18 HOH HOH . G 5 HOH A 119 1419 83 HOH HOH . G 5 HOH A 120 1420 51 HOH HOH . G 5 HOH A 121 1421 105 HOH HOH . G 5 HOH A 122 1422 90 HOH HOH . G 5 HOH A 123 1423 130 HOH HOH . G 5 HOH A 124 1424 82 HOH HOH . G 5 HOH A 125 1425 62 HOH HOH . G 5 HOH A 126 1426 101 HOH HOH . G 5 HOH A 127 1427 240 HOH HOH . G 5 HOH A 128 1428 72 HOH HOH . G 5 HOH A 129 1429 116 HOH HOH . G 5 HOH A 130 1430 39 HOH HOH . G 5 HOH A 131 1431 78 HOH HOH . G 5 HOH A 132 1432 145 HOH HOH . G 5 HOH A 133 1433 10 HOH HOH . G 5 HOH A 134 1434 11 HOH HOH . G 5 HOH A 135 1435 97 HOH HOH . G 5 HOH A 136 1436 53 HOH HOH . G 5 HOH A 137 1437 209 HOH HOH . G 5 HOH A 138 1438 190 HOH HOH . G 5 HOH A 139 1439 123 HOH HOH . G 5 HOH A 140 1440 196 HOH HOH . G 5 HOH A 141 1441 252 HOH HOH . G 5 HOH A 142 1442 95 HOH HOH . G 5 HOH A 143 1443 234 HOH HOH . G 5 HOH A 144 1444 254 HOH HOH . G 5 HOH A 145 1445 26 HOH HOH . G 5 HOH A 146 1446 57 HOH HOH . G 5 HOH A 147 1447 180 HOH HOH . G 5 HOH A 148 1448 179 HOH HOH . G 5 HOH A 149 1449 93 HOH HOH . G 5 HOH A 150 1450 178 HOH HOH . G 5 HOH A 151 1451 237 HOH HOH . G 5 HOH A 152 1452 96 HOH HOH . G 5 HOH A 153 1453 86 HOH HOH . G 5 HOH A 154 1454 199 HOH HOH . G 5 HOH A 155 1455 38 HOH HOH . G 5 HOH A 156 1456 164 HOH HOH . G 5 HOH A 157 1457 114 HOH HOH . G 5 HOH A 158 1458 215 HOH HOH . G 5 HOH A 159 1459 66 HOH HOH . G 5 HOH A 160 1460 188 HOH HOH . G 5 HOH A 161 1461 230 HOH HOH . G 5 HOH A 162 1462 122 HOH HOH . G 5 HOH A 163 1463 41 HOH HOH . G 5 HOH A 164 1464 81 HOH HOH . G 5 HOH A 165 1465 204 HOH HOH . G 5 HOH A 166 1466 110 HOH HOH . G 5 HOH A 167 1467 91 HOH HOH . G 5 HOH A 168 1468 186 HOH HOH . G 5 HOH A 169 1469 152 HOH HOH . G 5 HOH A 170 1470 181 HOH HOH . G 5 HOH A 171 1471 224 HOH HOH . G 5 HOH A 172 1472 69 HOH HOH . G 5 HOH A 173 1473 243 HOH HOH . G 5 HOH A 174 1474 167 HOH HOH . G 5 HOH A 175 1475 220 HOH HOH . G 5 HOH A 176 1476 60 HOH HOH . G 5 HOH A 177 1477 225 HOH HOH . G 5 HOH A 178 1478 217 HOH HOH . G 5 HOH A 179 1479 135 HOH HOH . G 5 HOH A 180 1480 151 HOH HOH . G 5 HOH A 181 1481 159 HOH HOH . G 5 HOH A 182 1482 37 HOH HOH . G 5 HOH A 183 1483 257 HOH HOH . G 5 HOH A 184 1484 157 HOH HOH . G 5 HOH A 185 1485 250 HOH HOH . G 5 HOH A 186 1486 210 HOH HOH . G 5 HOH A 187 1487 103 HOH HOH . G 5 HOH A 188 1488 112 HOH HOH . G 5 HOH A 189 1489 84 HOH HOH . G 5 HOH A 190 1490 174 HOH HOH . G 5 HOH A 191 1491 233 HOH HOH . G 5 HOH A 192 1492 119 HOH HOH . G 5 HOH A 193 1493 8 HOH HOH . G 5 HOH A 194 1494 146 HOH HOH . G 5 HOH A 195 1495 137 HOH HOH . G 5 HOH A 196 1496 248 HOH HOH . G 5 HOH A 197 1497 125 HOH HOH . G 5 HOH A 198 1498 71 HOH HOH . G 5 HOH A 199 1499 185 HOH HOH . G 5 HOH A 200 1500 44 HOH HOH . G 5 HOH A 201 1501 183 HOH HOH . G 5 HOH A 202 1502 74 HOH HOH . G 5 HOH A 203 1503 117 HOH HOH . G 5 HOH A 204 1504 205 HOH HOH . G 5 HOH A 205 1505 244 HOH HOH . G 5 HOH A 206 1506 149 HOH HOH . G 5 HOH A 207 1507 249 HOH HOH . G 5 HOH A 208 1508 127 HOH HOH . G 5 HOH A 209 1509 150 HOH HOH . G 5 HOH A 210 1510 251 HOH HOH . G 5 HOH A 211 1511 63 HOH HOH . G 5 HOH A 212 1512 35 HOH HOH . G 5 HOH A 213 1513 148 HOH HOH . G 5 HOH A 214 1514 211 HOH HOH . G 5 HOH A 215 1515 168 HOH HOH . G 5 HOH A 216 1516 255 HOH HOH . G 5 HOH A 217 1517 219 HOH HOH . G 5 HOH A 218 1518 202 HOH HOH . G 5 HOH A 219 1519 121 HOH HOH . G 5 HOH A 220 1520 213 HOH HOH . G 5 HOH A 221 1521 136 HOH HOH . G 5 HOH A 222 1522 214 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 RK1 . . . B 2 4.83 25.955 12.119 0.49 49.92 ? C10 RK1 1201 A 1 HETATM 2 C C15 RK1 . . . B 2 7.975 29.416 13.363 0.49 42.53 ? C15 RK1 1201 A 1 HETATM 3 C C17 RK1 . . . B 2 6.542 31.571 13.116 0.49 38.26 ? C17 RK1 1201 A 1 HETATM 4 C C20 RK1 . . . B 2 8.808 33.168 13.146 0.49 38.12 ? C20 RK1 1201 A 1 HETATM 5 C C21 RK1 . . . B 2 8.949 31.793 13.252 0.49 38.91 ? C21 RK1 1201 A 1 HETATM 6 C C01 RK1 . . . B 2 6.377 26.928 8.397 0.49 50.54 ? C01 RK1 1201 A 1 HETATM 7 C C02 RK1 . . . B 2 5.277 26.895 9.448 0.49 51.15 ? C02 RK1 1201 A 1 HETATM 8 C C04 RK1 . . . B 2 5.417 29.078 9.979 0.49 50.83 ? C04 RK1 1201 A 1 HETATM 9 C C05 RK1 . . . B 2 4.051 29.743 9.868 0.49 51.32 ? C05 RK1 1201 A 1 HETATM 10 C C07 RK1 . . . B 2 3.169 29.521 12.122 0.49 51.8 ? C07 RK1 1201 A 1 HETATM 11 C C08 RK1 . . . B 2 3.416 27.988 11.965 0.49 51.1 ? C08 RK1 1201 A 1 HETATM 12 C C09 RK1 . . . B 2 4.876 27.464 11.722 0.49 50.2 ? C09 RK1 1201 A 1 HETATM 13 C C11 RK1 . . . B 2 3.602 25.157 11.634 0.49 49.95 ? C11 RK1 1201 A 1 HETATM 14 C C12 RK1 . . . B 2 5.811 28.176 12.788 0.49 48.75 ? C12 RK1 1201 A 1 HETATM 15 C C16 RK1 . . . B 2 7.833 30.983 13.24 0.49 39.9 ? C16 RK1 1201 A 1 HETATM 16 C C18 RK1 . . . B 2 6.403 32.927 13.008 0.49 38.14 ? C18 RK1 1201 A 1 HETATM 17 C C19 RK1 . . . B 2 7.533 33.743 13.018 0.49 37.77 ? C19 RK1 1201 A 1 HETATM 18 N N03 RK1 . . . B 2 5.444 27.748 10.415 0.49 50.76 ? N03 RK1 1201 A 1 HETATM 19 N N06 RK1 . . . B 2 3.655 30.381 11.087 0.49 51 ? N06 RK1 1201 A 1 HETATM 20 N N14 RK1 . . . B 2 7.113 28.723 12.399 0.49 45.31 ? N14 RK1 1201 A 1 HETATM 21 O O13 RK1 . . . B 2 5.439 28.283 13.913 0.49 50.86 ? O13 RK1 1201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #