data_5QXY
#
_model_server_result.job_id            buQxrsO5yCuxgP7v1A9kUA 
_model_server_result.datetime_utc      '2024-12-30 16:17:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":1206}' 
#
_entry.id    5QXY 
#
_exptl.entry_id    5QXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            5QXY 
_cell.length_a            80.966 
_cell.length_b            80.966 
_cell.length_c            140.151 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     5QXY 
_atom_sites.fract_transf_matrix[1][1]    0.012351 
_atom_sites.fract_transf_matrix[1][2]    0.007131 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014262 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RK7 A 1 1201 1201 RK7 LIG . 
C 3 SO4 A 1 1202 1 SO4 SO4 . 
D 3 SO4 A 1 1203 2 SO4 SO4 . 
E 4 EDO A 1 1204 5 EDO EDO . 
F 4 EDO A 1 1205 6 EDO EDO . 
G 4 EDO A 1 1206 7 EDO EDO . 
H 5 HOH A 1 1301 184 HOH HOH . 
H 5 HOH A 2 1302 256 HOH HOH . 
H 5 HOH A 3 1303 261 HOH HOH . 
H 5 HOH A 4 1304 158 HOH HOH . 
H 5 HOH A 5 1305 94 HOH HOH . 
H 5 HOH A 6 1306 191 HOH HOH . 
H 5 HOH A 7 1307 134 HOH HOH . 
H 5 HOH A 8 1308 129 HOH HOH . 
H 5 HOH A 9 1309 59 HOH HOH . 
H 5 HOH A 10 1310 144 HOH HOH . 
H 5 HOH A 11 1311 9 HOH HOH . 
H 5 HOH A 12 1312 142 HOH HOH . 
H 5 HOH A 13 1313 5 HOH HOH . 
H 5 HOH A 14 1314 171 HOH HOH . 
H 5 HOH A 15 1315 68 HOH HOH . 
H 5 HOH A 16 1316 200 HOH HOH . 
H 5 HOH A 17 1317 161 HOH HOH . 
H 5 HOH A 18 1318 128 HOH HOH . 
H 5 HOH A 19 1319 87 HOH HOH . 
H 5 HOH A 20 1320 118 HOH HOH . 
H 5 HOH A 21 1321 111 HOH HOH . 
H 5 HOH A 22 1322 27 HOH HOH . 
H 5 HOH A 23 1323 98 HOH HOH . 
H 5 HOH A 24 1324 79 HOH HOH . 
H 5 HOH A 25 1325 201 HOH HOH . 
H 5 HOH A 26 1326 28 HOH HOH . 
H 5 HOH A 27 1327 113 HOH HOH . 
H 5 HOH A 28 1328 50 HOH HOH . 
H 5 HOH A 29 1329 88 HOH HOH . 
H 5 HOH A 30 1330 32 HOH HOH . 
H 5 HOH A 31 1331 109 HOH HOH . 
H 5 HOH A 32 1332 132 HOH HOH . 
H 5 HOH A 33 1333 23 HOH HOH . 
H 5 HOH A 34 1334 16 HOH HOH . 
H 5 HOH A 35 1335 106 HOH HOH . 
H 5 HOH A 36 1336 203 HOH HOH . 
H 5 HOH A 37 1337 13 HOH HOH . 
H 5 HOH A 38 1338 75 HOH HOH . 
H 5 HOH A 39 1339 100 HOH HOH . 
H 5 HOH A 40 1340 56 HOH HOH . 
H 5 HOH A 41 1341 165 HOH HOH . 
H 5 HOH A 42 1342 187 HOH HOH . 
H 5 HOH A 43 1343 80 HOH HOH . 
H 5 HOH A 44 1344 197 HOH HOH . 
H 5 HOH A 45 1345 25 HOH HOH . 
H 5 HOH A 46 1346 77 HOH HOH . 
H 5 HOH A 47 1347 12 HOH HOH . 
H 5 HOH A 48 1348 19 HOH HOH . 
H 5 HOH A 49 1349 236 HOH HOH . 
H 5 HOH A 50 1350 61 HOH HOH . 
H 5 HOH A 51 1351 47 HOH HOH . 
H 5 HOH A 52 1352 33 HOH HOH . 
H 5 HOH A 53 1353 189 HOH HOH . 
H 5 HOH A 54 1354 42 HOH HOH . 
H 5 HOH A 55 1355 31 HOH HOH . 
H 5 HOH A 56 1356 64 HOH HOH . 
H 5 HOH A 57 1357 221 HOH HOH . 
H 5 HOH A 58 1358 73 HOH HOH . 
H 5 HOH A 59 1359 141 HOH HOH . 
H 5 HOH A 60 1360 17 HOH HOH . 
H 5 HOH A 61 1361 162 HOH HOH . 
H 5 HOH A 62 1362 7 HOH HOH . 
H 5 HOH A 63 1363 14 HOH HOH . 
H 5 HOH A 64 1364 20 HOH HOH . 
H 5 HOH A 65 1365 55 HOH HOH . 
H 5 HOH A 66 1366 140 HOH HOH . 
H 5 HOH A 67 1367 52 HOH HOH . 
H 5 HOH A 68 1368 34 HOH HOH . 
H 5 HOH A 69 1369 99 HOH HOH . 
H 5 HOH A 70 1370 92 HOH HOH . 
H 5 HOH A 71 1371 46 HOH HOH . 
H 5 HOH A 72 1372 70 HOH HOH . 
H 5 HOH A 73 1373 40 HOH HOH . 
H 5 HOH A 74 1374 160 HOH HOH . 
H 5 HOH A 75 1375 260 HOH HOH . 
H 5 HOH A 76 1376 45 HOH HOH . 
H 5 HOH A 77 1377 76 HOH HOH . 
H 5 HOH A 78 1378 24 HOH HOH . 
H 5 HOH A 79 1379 22 HOH HOH . 
H 5 HOH A 80 1380 139 HOH HOH . 
H 5 HOH A 81 1381 43 HOH HOH . 
H 5 HOH A 82 1382 48 HOH HOH . 
H 5 HOH A 83 1383 36 HOH HOH . 
H 5 HOH A 84 1384 83 HOH HOH . 
H 5 HOH A 85 1385 107 HOH HOH . 
H 5 HOH A 86 1386 51 HOH HOH . 
H 5 HOH A 87 1387 163 HOH HOH . 
H 5 HOH A 88 1388 58 HOH HOH . 
H 5 HOH A 89 1389 6 HOH HOH . 
H 5 HOH A 90 1390 120 HOH HOH . 
H 5 HOH A 91 1391 62 HOH HOH . 
H 5 HOH A 92 1392 89 HOH HOH . 
H 5 HOH A 93 1393 54 HOH HOH . 
H 5 HOH A 94 1394 130 HOH HOH . 
H 5 HOH A 95 1395 4 HOH HOH . 
H 5 HOH A 96 1396 154 HOH HOH . 
H 5 HOH A 97 1397 243 HOH HOH . 
H 5 HOH A 98 1398 102 HOH HOH . 
H 5 HOH A 99 1399 105 HOH HOH . 
H 5 HOH A 100 1400 216 HOH HOH . 
H 5 HOH A 101 1401 122 HOH HOH . 
H 5 HOH A 102 1402 124 HOH HOH . 
H 5 HOH A 103 1403 67 HOH HOH . 
H 5 HOH A 104 1404 30 HOH HOH . 
H 5 HOH A 105 1405 116 HOH HOH . 
H 5 HOH A 106 1406 101 HOH HOH . 
H 5 HOH A 107 1407 90 HOH HOH . 
H 5 HOH A 108 1408 259 HOH HOH . 
H 5 HOH A 109 1409 15 HOH HOH . 
H 5 HOH A 110 1410 179 HOH HOH . 
H 5 HOH A 111 1411 18 HOH HOH . 
H 5 HOH A 112 1412 237 HOH HOH . 
H 5 HOH A 113 1413 253 HOH HOH . 
H 5 HOH A 114 1414 147 HOH HOH . 
H 5 HOH A 115 1415 85 HOH HOH . 
H 5 HOH A 116 1416 240 HOH HOH . 
H 5 HOH A 117 1417 234 HOH HOH . 
H 5 HOH A 118 1418 172 HOH HOH . 
H 5 HOH A 119 1419 3 HOH HOH . 
H 5 HOH A 120 1420 39 HOH HOH . 
H 5 HOH A 121 1421 29 HOH HOH . 
H 5 HOH A 122 1422 82 HOH HOH . 
H 5 HOH A 123 1423 95 HOH HOH . 
H 5 HOH A 124 1424 252 HOH HOH . 
H 5 HOH A 125 1425 86 HOH HOH . 
H 5 HOH A 126 1426 78 HOH HOH . 
H 5 HOH A 127 1427 155 HOH HOH . 
H 5 HOH A 128 1428 72 HOH HOH . 
H 5 HOH A 129 1429 196 HOH HOH . 
H 5 HOH A 130 1430 10 HOH HOH . 
H 5 HOH A 131 1431 123 HOH HOH . 
H 5 HOH A 132 1432 145 HOH HOH . 
H 5 HOH A 133 1433 53 HOH HOH . 
H 5 HOH A 134 1434 206 HOH HOH . 
H 5 HOH A 135 1435 176 HOH HOH . 
H 5 HOH A 136 1436 49 HOH HOH . 
H 5 HOH A 137 1437 26 HOH HOH . 
H 5 HOH A 138 1438 131 HOH HOH . 
H 5 HOH A 139 1439 97 HOH HOH . 
H 5 HOH A 140 1440 11 HOH HOH . 
H 5 HOH A 141 1441 150 HOH HOH . 
H 5 HOH A 142 1442 21 HOH HOH . 
H 5 HOH A 143 1443 254 HOH HOH . 
H 5 HOH A 144 1444 246 HOH HOH . 
H 5 HOH A 145 1445 177 HOH HOH . 
H 5 HOH A 146 1446 180 HOH HOH . 
H 5 HOH A 147 1447 69 HOH HOH . 
H 5 HOH A 148 1448 209 HOH HOH . 
H 5 HOH A 149 1449 175 HOH HOH . 
H 5 HOH A 150 1450 199 HOH HOH . 
H 5 HOH A 151 1451 93 HOH HOH . 
H 5 HOH A 152 1452 115 HOH HOH . 
H 5 HOH A 153 1453 57 HOH HOH . 
H 5 HOH A 154 1454 207 HOH HOH . 
H 5 HOH A 155 1455 96 HOH HOH . 
H 5 HOH A 156 1456 188 HOH HOH . 
H 5 HOH A 157 1457 178 HOH HOH . 
H 5 HOH A 158 1458 164 HOH HOH . 
H 5 HOH A 159 1459 194 HOH HOH . 
H 5 HOH A 160 1460 152 HOH HOH . 
H 5 HOH A 161 1461 38 HOH HOH . 
H 5 HOH A 162 1462 114 HOH HOH . 
H 5 HOH A 163 1463 2 HOH HOH . 
H 5 HOH A 164 1464 244 HOH HOH . 
H 5 HOH A 165 1465 81 HOH HOH . 
H 5 HOH A 166 1466 211 HOH HOH . 
H 5 HOH A 167 1467 167 HOH HOH . 
H 5 HOH A 168 1468 225 HOH HOH . 
H 5 HOH A 169 1469 186 HOH HOH . 
H 5 HOH A 170 1470 91 HOH HOH . 
H 5 HOH A 171 1471 60 HOH HOH . 
H 5 HOH A 172 1472 110 HOH HOH . 
H 5 HOH A 173 1473 220 HOH HOH . 
H 5 HOH A 174 1474 159 HOH HOH . 
H 5 HOH A 175 1475 224 HOH HOH . 
H 5 HOH A 176 1476 215 HOH HOH . 
H 5 HOH A 177 1477 250 HOH HOH . 
H 5 HOH A 178 1478 37 HOH HOH . 
H 5 HOH A 179 1479 151 HOH HOH . 
H 5 HOH A 180 1480 112 HOH HOH . 
H 5 HOH A 181 1481 205 HOH HOH . 
H 5 HOH A 182 1482 210 HOH HOH . 
H 5 HOH A 183 1483 66 HOH HOH . 
H 5 HOH A 184 1484 157 HOH HOH . 
H 5 HOH A 185 1485 84 HOH HOH . 
H 5 HOH A 186 1486 125 HOH HOH . 
H 5 HOH A 187 1487 217 HOH HOH . 
H 5 HOH A 188 1488 262 HOH HOH . 
H 5 HOH A 189 1489 103 HOH HOH . 
H 5 HOH A 190 1490 8 HOH HOH . 
H 5 HOH A 191 1491 233 HOH HOH . 
H 5 HOH A 192 1492 174 HOH HOH . 
H 5 HOH A 193 1493 74 HOH HOH . 
H 5 HOH A 194 1494 119 HOH HOH . 
H 5 HOH A 195 1495 146 HOH HOH . 
H 5 HOH A 196 1496 148 HOH HOH . 
H 5 HOH A 197 1497 44 HOH HOH . 
H 5 HOH A 198 1498 185 HOH HOH . 
H 5 HOH A 199 1499 251 HOH HOH . 
H 5 HOH A 200 1500 71 HOH HOH . 
H 5 HOH A 201 1501 104 HOH HOH . 
H 5 HOH A 202 1502 63 HOH HOH . 
H 5 HOH A 203 1503 127 HOH HOH . 
H 5 HOH A 204 1504 248 HOH HOH . 
H 5 HOH A 205 1505 137 HOH HOH . 
H 5 HOH A 206 1506 149 HOH HOH . 
H 5 HOH A 207 1507 168 HOH HOH . 
H 5 HOH A 208 1508 35 HOH HOH . 
H 5 HOH A 209 1509 181 HOH HOH . 
H 5 HOH A 210 1510 255 HOH HOH . 
H 5 HOH A 211 1511 249 HOH HOH . 
H 5 HOH A 212 1512 183 HOH HOH . 
H 5 HOH A 213 1513 202 HOH HOH . 
H 5 HOH A 214 1514 219 HOH HOH . 
H 5 HOH A 215 1515 213 HOH HOH . 
H 5 HOH A 216 1516 257 HOH HOH . 
H 5 HOH A 217 1517 121 HOH HOH . 
H 5 HOH A 218 1518 136 HOH HOH . 
H 5 HOH A 219 1519 214 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . G 4 17.45 51.122 1.593 0.37 43.37 ? C1 EDO 1206 A 1 
HETATM 2 O O1 EDO . . . G 4 18.105 50.423 0.555 0.37 43.29 ? O1 EDO 1206 A 1 
HETATM 3 C C2 EDO . . . G 4 18.33 51.344 2.763 0.37 43.82 ? C2 EDO 1206 A 1 
HETATM 4 O O2 EDO . . . G 4 19.382 50.403 2.852 0.37 42.95 ? O2 EDO 1206 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           338 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#