data_5QY1 # _model_server_result.job_id efvZTEUbg_HyxtToWXNsmw _model_server_result.datetime_utc '2024-11-22 06:55:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qy1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 5QY1 # _exptl.entry_id 5QY1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 124.141 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2-aminopyridin-3-yl)methanol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.75 _cell.angle_gamma 90 _cell.entry_id 5QY1 _cell.length_a 89.028 _cell.length_b 81.524 _cell.length_c 93.279 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QY1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 N2 O' _chem_comp.formula_weight 124.141 _chem_comp.id R8A _chem_comp.mon_nstd_flag . _chem_comp.name (2-aminopyridin-3-yl)methanol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O R8A sing 289 n n C5 C2 R8A sing 290 n n N1 C3 R8A sing 291 n n C2 C3 R8A doub 292 n y C2 C1 R8A sing 293 n y C3 N R8A sing 294 n y C1 C R8A doub 295 n y N C4 R8A doub 296 n y C C4 R8A sing 297 n y C4 H1 R8A sing 298 n n C5 H2 R8A sing 299 n n C5 H3 R8A sing 300 n n N1 H4 R8A sing 301 n n N1 H5 R8A sing 302 n n O H6 R8A sing 303 n n C1 H7 R8A sing 304 n n C H8 R8A sing 305 n n # _atom_sites.entry_id 5QY1 _atom_sites.fract_transf_matrix[1][1] 0.011232 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003812 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012266 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PGR A 1 2101 2101 PGR PGR . D 4 SO4 A 1 2102 2201 SO4 SO4 . E 5 R8A B 1 401 401 R8A XXX . F 4 SO4 B 1 402 501 SO4 SO4 . G 6 HOH A 1 2201 65 HOH HOH . G 6 HOH A 2 2202 73 HOH HOH . G 6 HOH A 3 2203 78 HOH HOH . G 6 HOH A 4 2204 17 HOH HOH . G 6 HOH A 5 2205 80 HOH HOH . G 6 HOH A 6 2206 55 HOH HOH . G 6 HOH A 7 2207 47 HOH HOH . G 6 HOH A 8 2208 27 HOH HOH . G 6 HOH A 9 2209 25 HOH HOH . G 6 HOH A 10 2210 4 HOH HOH . G 6 HOH A 11 2211 40 HOH HOH . G 6 HOH A 12 2212 14 HOH HOH . G 6 HOH A 13 2213 52 HOH HOH . G 6 HOH A 14 2214 79 HOH HOH . G 6 HOH A 15 2215 57 HOH HOH . G 6 HOH A 16 2216 69 HOH HOH . G 6 HOH A 17 2217 18 HOH HOH . G 6 HOH A 18 2218 35 HOH HOH . G 6 HOH A 19 2219 20 HOH HOH . G 6 HOH A 20 2220 72 HOH HOH . G 6 HOH A 21 2221 6 HOH HOH . G 6 HOH A 22 2222 21 HOH HOH . G 6 HOH A 23 2223 70 HOH HOH . G 6 HOH A 24 2224 48 HOH HOH . G 6 HOH A 25 2225 5 HOH HOH . G 6 HOH A 26 2226 50 HOH HOH . G 6 HOH A 27 2227 16 HOH HOH . G 6 HOH A 28 2228 33 HOH HOH . G 6 HOH A 29 2229 9 HOH HOH . G 6 HOH A 30 2230 39 HOH HOH . G 6 HOH A 31 2231 3 HOH HOH . G 6 HOH A 32 2232 66 HOH HOH . G 6 HOH A 33 2233 44 HOH HOH . G 6 HOH A 34 2234 61 HOH HOH . G 6 HOH A 35 2235 12 HOH HOH . G 6 HOH A 36 2236 53 HOH HOH . G 6 HOH A 37 2237 8 HOH HOH . G 6 HOH A 38 2238 38 HOH HOH . G 6 HOH A 39 2239 64 HOH HOH . G 6 HOH A 40 2240 60 HOH HOH . G 6 HOH A 41 2241 62 HOH HOH . G 6 HOH A 42 2242 32 HOH HOH . G 6 HOH A 43 2243 15 HOH HOH . G 6 HOH A 44 2244 49 HOH HOH . G 6 HOH A 45 2245 75 HOH HOH . G 6 HOH A 46 2246 67 HOH HOH . H 6 HOH B 1 501 45 HOH HOH . H 6 HOH B 2 502 2 HOH HOH . H 6 HOH B 3 503 36 HOH HOH . H 6 HOH B 4 504 63 HOH HOH . H 6 HOH B 5 505 43 HOH HOH . H 6 HOH B 6 506 42 HOH HOH . H 6 HOH B 7 507 7 HOH HOH . H 6 HOH B 8 508 56 HOH HOH . H 6 HOH B 9 509 19 HOH HOH . H 6 HOH B 10 510 41 HOH HOH . H 6 HOH B 11 511 77 HOH HOH . H 6 HOH B 12 512 26 HOH HOH . H 6 HOH B 13 513 74 HOH HOH . H 6 HOH B 14 514 58 HOH HOH . H 6 HOH B 15 515 46 HOH HOH . H 6 HOH B 16 516 29 HOH HOH . H 6 HOH B 17 517 28 HOH HOH . H 6 HOH B 18 518 34 HOH HOH . H 6 HOH B 19 519 23 HOH HOH . H 6 HOH B 20 520 68 HOH HOH . H 6 HOH B 21 521 11 HOH HOH . H 6 HOH B 22 522 59 HOH HOH . H 6 HOH B 23 523 22 HOH HOH . H 6 HOH B 24 524 76 HOH HOH . H 6 HOH B 25 525 37 HOH HOH . H 6 HOH B 26 526 24 HOH HOH . H 6 HOH B 27 527 54 HOH HOH . H 6 HOH B 28 528 10 HOH HOH . H 6 HOH B 29 529 31 HOH HOH . H 6 HOH B 30 530 13 HOH HOH . H 6 HOH B 31 531 30 HOH HOH . H 6 HOH B 32 532 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 R8A . D . E 5 11.259 1.268 -13.363 0.2 27.05 ? C4 R8A 401 B 1 HETATM 2 C C4 R8A . E . E 5 11.243 1.281 -13.364 0.18 27.82 ? C4 R8A 401 B 1 HETATM 3 C C4 R8A . F . E 5 11.25 1.271 -13.355 0.21 27.22 ? C4 R8A 401 B 1 HETATM 4 C C5 R8A . D . E 5 10.839 -0.456 -9.514 0.2 31.26 ? C5 R8A 401 B 1 HETATM 5 C C5 R8A . E . E 5 10.858 -0.497 -9.53 0.18 31.95 ? C5 R8A 401 B 1 HETATM 6 C C5 R8A . F . E 5 10.845 -0.515 -9.531 0.21 32.07 ? C5 R8A 401 B 1 HETATM 7 N N1 R8A . D . E 5 10.903 -1.971 -11.916 0.2 28.39 ? N1 R8A 401 B 1 HETATM 8 N N1 R8A . E . E 5 10.907 -1.962 -11.92 0.18 29.04 ? N1 R8A 401 B 1 HETATM 9 N N1 R8A . F . E 5 10.903 -1.978 -11.932 0.21 28.67 ? N1 R8A 401 B 1 HETATM 10 O O R8A . D . E 5 9.688 0.15 -8.916 0.2 33.92 ? O R8A 401 B 1 HETATM 11 O O R8A . E . E 5 9.483 -0.477 -9.136 0.18 34.85 ? O R8A 401 B 1 HETATM 12 O O R8A . F . E 5 9.513 -0.302 -9.064 0.21 35.61 ? O R8A 401 B 1 HETATM 13 C C2 R8A . D . E 5 10.986 0.147 -10.878 0.2 28.57 ? C2 R8A 401 B 1 HETATM 14 C C2 R8A . E . E 5 10.989 0.15 -10.878 0.18 29.35 ? C2 R8A 401 B 1 HETATM 15 C C2 R8A . F . E 5 10.983 0.127 -10.877 0.21 29 ? C2 R8A 401 B 1 HETATM 16 C C1 R8A . D . E 5 11.093 1.518 -10.988 0.2 27.21 ? C1 R8A 401 B 1 HETATM 17 C C1 R8A . E . E 5 11.095 1.523 -10.983 0.18 28.02 ? C1 R8A 401 B 1 HETATM 18 C C1 R8A . F . E 5 11.09 1.499 -10.975 0.21 27.45 ? C1 R8A 401 B 1 HETATM 19 C C3 R8A . D . E 5 11.009 -0.629 -12.015 0.2 28.39 ? C3 R8A 401 B 1 HETATM 20 C C3 R8A . E . E 5 11.009 -0.619 -12.02 0.18 29.09 ? C3 R8A 401 B 1 HETATM 21 C C3 R8A . F . E 5 11.006 -0.636 -12.023 0.21 28.69 ? C3 R8A 401 B 1 HETATM 22 N N R8A . D . E 5 11.151 -0.051 -13.232 0.2 27.42 ? N R8A 401 B 1 HETATM 23 N N R8A . E . E 5 11.139 -0.039 -13.236 0.18 28.16 ? N R8A 401 B 1 HETATM 24 N N R8A . F . E 5 11.145 -0.049 -13.235 0.21 27.62 ? N R8A 401 B 1 HETATM 25 C C R8A . D . E 5 11.236 2.083 -12.239 0.2 27.15 ? C R8A 401 B 1 HETATM 26 C C R8A . E . E 5 11.226 2.093 -12.236 0.18 27.93 ? C R8A 401 B 1 HETATM 27 C C R8A . F . E 5 11.229 2.075 -12.222 0.21 27.32 ? C R8A 401 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #