data_5QY2
#
_model_server_result.job_id            zTSAq1mO7SjlInV0-pWsjQ 
_model_server_result.datetime_utc      '2024-11-01 04:33:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qy2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    5QY2 
#
_exptl.entry_id    5QY2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              128.129 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-(propan-2-yl)-1,2,4-oxadiazol-5(4H)-one 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.83 
_cell.angle_gamma         90 
_cell.entry_id            5QY2 
_cell.length_a            88.522 
_cell.length_b            82.031 
_cell.length_c            93.961 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QY2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H8 N2 O2' 
_chem_comp.formula_weight    128.129 
_chem_comp.id                TJ1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-(propan-2-yl)-1,2,4-oxadiazol-5(4H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O TJ1 sing 322 n n 
N1 C3 TJ1 doub 323 n n 
O C4 TJ1 sing 324 n n 
C3 C1 TJ1 sing 325 n n 
C3 N TJ1 sing 326 n n 
C1 C2 TJ1 sing 327 n n 
C1 C TJ1 sing 328 n n 
C4 O1 TJ1 doub 329 n n 
C4 N TJ1 sing 330 n n 
N H1 TJ1 sing 331 n n 
C1 H2 TJ1 sing 332 n n 
C2 H3 TJ1 sing 333 n n 
C2 H4 TJ1 sing 334 n n 
C2 H5 TJ1 sing 335 n n 
C H6 TJ1 sing 336 n n 
C H7 TJ1 sing 337 n n 
C H8 TJ1 sing 338 n n 
#
_atom_sites.entry_id                     5QY2 
_atom_sites.fract_transf_matrix[1][1]    0.011297 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003852 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012191 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 2301 2301 SO4 SO4 . 
D 3 SO4 A 1 2302 2401 SO4 SO4 . 
E 3 SO4 A 1 2303 2501 SO4 SO4 . 
F 4 PGR A 1 2304 2601 PGR PGR . 
G 4 PGR A 1 2305 2701 PGR PGR . 
H 3 SO4 A 1 2306 2801 SO4 SO4 . 
I 4 PGR A 1 2307 2901 PGR PGR . 
J 5 TJ1 B 1 401 401 TJ1 XXX . 
K 6 HOH A 1 2401 58 HOH HOH . 
K 6 HOH A 2 2402 189 HOH HOH . 
K 6 HOH A 3 2403 46 HOH HOH . 
K 6 HOH A 4 2404 84 HOH HOH . 
K 6 HOH A 5 2405 95 HOH HOH . 
K 6 HOH A 6 2406 93 HOH HOH . 
K 6 HOH A 7 2407 179 HOH HOH . 
K 6 HOH A 8 2408 142 HOH HOH . 
K 6 HOH A 9 2409 72 HOH HOH . 
K 6 HOH A 10 2410 175 HOH HOH . 
K 6 HOH A 11 2411 62 HOH HOH . 
K 6 HOH A 12 2412 32 HOH HOH . 
K 6 HOH A 13 2413 191 HOH HOH . 
K 6 HOH A 14 2414 128 HOH HOH . 
K 6 HOH A 15 2415 37 HOH HOH . 
K 6 HOH A 16 2416 13 HOH HOH . 
K 6 HOH A 17 2417 27 HOH HOH . 
K 6 HOH A 18 2418 59 HOH HOH . 
K 6 HOH A 19 2419 40 HOH HOH . 
K 6 HOH A 20 2420 98 HOH HOH . 
K 6 HOH A 21 2421 146 HOH HOH . 
K 6 HOH A 22 2422 74 HOH HOH . 
K 6 HOH A 23 2423 186 HOH HOH . 
K 6 HOH A 24 2424 5 HOH HOH . 
K 6 HOH A 25 2425 180 HOH HOH . 
K 6 HOH A 26 2426 36 HOH HOH . 
K 6 HOH A 27 2427 183 HOH HOH . 
K 6 HOH A 28 2428 6 HOH HOH . 
K 6 HOH A 29 2429 103 HOH HOH . 
K 6 HOH A 30 2430 39 HOH HOH . 
K 6 HOH A 31 2431 7 HOH HOH . 
K 6 HOH A 32 2432 138 HOH HOH . 
K 6 HOH A 33 2433 67 HOH HOH . 
K 6 HOH A 34 2434 73 HOH HOH . 
K 6 HOH A 35 2435 19 HOH HOH . 
K 6 HOH A 36 2436 92 HOH HOH . 
K 6 HOH A 37 2437 107 HOH HOH . 
K 6 HOH A 38 2438 136 HOH HOH . 
K 6 HOH A 39 2439 33 HOH HOH . 
K 6 HOH A 40 2440 88 HOH HOH . 
K 6 HOH A 41 2441 104 HOH HOH . 
K 6 HOH A 42 2442 148 HOH HOH . 
K 6 HOH A 43 2443 167 HOH HOH . 
K 6 HOH A 44 2444 90 HOH HOH . 
K 6 HOH A 45 2445 9 HOH HOH . 
K 6 HOH A 46 2446 14 HOH HOH . 
K 6 HOH A 47 2447 4 HOH HOH . 
K 6 HOH A 48 2448 87 HOH HOH . 
K 6 HOH A 49 2449 140 HOH HOH . 
K 6 HOH A 50 2450 176 HOH HOH . 
K 6 HOH A 51 2451 18 HOH HOH . 
K 6 HOH A 52 2452 124 HOH HOH . 
K 6 HOH A 53 2453 64 HOH HOH . 
K 6 HOH A 54 2454 52 HOH HOH . 
K 6 HOH A 55 2455 118 HOH HOH . 
K 6 HOH A 56 2456 16 HOH HOH . 
K 6 HOH A 57 2457 79 HOH HOH . 
K 6 HOH A 58 2458 141 HOH HOH . 
K 6 HOH A 59 2459 85 HOH HOH . 
K 6 HOH A 60 2460 161 HOH HOH . 
K 6 HOH A 61 2461 21 HOH HOH . 
K 6 HOH A 62 2462 102 HOH HOH . 
K 6 HOH A 63 2463 28 HOH HOH . 
K 6 HOH A 64 2464 147 HOH HOH . 
K 6 HOH A 65 2465 94 HOH HOH . 
K 6 HOH A 66 2466 11 HOH HOH . 
K 6 HOH A 67 2467 126 HOH HOH . 
K 6 HOH A 68 2468 51 HOH HOH . 
K 6 HOH A 69 2469 108 HOH HOH . 
K 6 HOH A 70 2470 160 HOH HOH . 
K 6 HOH A 71 2471 54 HOH HOH . 
K 6 HOH A 72 2472 125 HOH HOH . 
K 6 HOH A 73 2473 77 HOH HOH . 
K 6 HOH A 74 2474 20 HOH HOH . 
K 6 HOH A 75 2475 91 HOH HOH . 
K 6 HOH A 76 2476 81 HOH HOH . 
K 6 HOH A 77 2477 53 HOH HOH . 
K 6 HOH A 78 2478 45 HOH HOH . 
K 6 HOH A 79 2479 41 HOH HOH . 
K 6 HOH A 80 2480 3 HOH HOH . 
K 6 HOH A 81 2481 109 HOH HOH . 
K 6 HOH A 82 2482 114 HOH HOH . 
K 6 HOH A 83 2483 113 HOH HOH . 
K 6 HOH A 84 2484 173 HOH HOH . 
K 6 HOH A 85 2485 152 HOH HOH . 
K 6 HOH A 86 2486 188 HOH HOH . 
K 6 HOH A 87 2487 70 HOH HOH . 
K 6 HOH A 88 2488 120 HOH HOH . 
K 6 HOH A 89 2489 185 HOH HOH . 
K 6 HOH A 90 2490 12 HOH HOH . 
K 6 HOH A 91 2491 35 HOH HOH . 
L 6 HOH B 1 501 162 HOH HOH . 
L 6 HOH B 2 502 76 HOH HOH . 
L 6 HOH B 3 503 134 HOH HOH . 
L 6 HOH B 4 504 60 HOH HOH . 
L 6 HOH B 5 505 174 HOH HOH . 
L 6 HOH B 6 506 150 HOH HOH . 
L 6 HOH B 7 507 129 HOH HOH . 
L 6 HOH B 8 508 100 HOH HOH . 
L 6 HOH B 9 509 25 HOH HOH . 
L 6 HOH B 10 510 69 HOH HOH . 
L 6 HOH B 11 511 122 HOH HOH . 
L 6 HOH B 12 512 169 HOH HOH . 
L 6 HOH B 13 513 177 HOH HOH . 
L 6 HOH B 14 514 151 HOH HOH . 
L 6 HOH B 15 515 144 HOH HOH . 
L 6 HOH B 16 516 110 HOH HOH . 
L 6 HOH B 17 517 137 HOH HOH . 
L 6 HOH B 18 518 31 HOH HOH . 
L 6 HOH B 19 519 71 HOH HOH . 
L 6 HOH B 20 520 112 HOH HOH . 
L 6 HOH B 21 521 86 HOH HOH . 
L 6 HOH B 22 522 23 HOH HOH . 
L 6 HOH B 23 523 83 HOH HOH . 
L 6 HOH B 24 524 56 HOH HOH . 
L 6 HOH B 25 525 155 HOH HOH . 
L 6 HOH B 26 526 22 HOH HOH . 
L 6 HOH B 27 527 145 HOH HOH . 
L 6 HOH B 28 528 105 HOH HOH . 
L 6 HOH B 29 529 57 HOH HOH . 
L 6 HOH B 30 530 101 HOH HOH . 
L 6 HOH B 31 531 17 HOH HOH . 
L 6 HOH B 32 532 116 HOH HOH . 
L 6 HOH B 33 533 127 HOH HOH . 
L 6 HOH B 34 534 80 HOH HOH . 
L 6 HOH B 35 535 121 HOH HOH . 
L 6 HOH B 36 536 96 HOH HOH . 
L 6 HOH B 37 537 61 HOH HOH . 
L 6 HOH B 38 538 78 HOH HOH . 
L 6 HOH B 39 539 38 HOH HOH . 
L 6 HOH B 40 540 68 HOH HOH . 
L 6 HOH B 41 541 181 HOH HOH . 
L 6 HOH B 42 542 82 HOH HOH . 
L 6 HOH B 43 543 29 HOH HOH . 
L 6 HOH B 44 544 156 HOH HOH . 
L 6 HOH B 45 545 63 HOH HOH . 
L 6 HOH B 46 546 47 HOH HOH . 
L 6 HOH B 47 547 117 HOH HOH . 
L 6 HOH B 48 548 119 HOH HOH . 
L 6 HOH B 49 549 65 HOH HOH . 
L 6 HOH B 50 550 48 HOH HOH . 
L 6 HOH B 51 551 66 HOH HOH . 
L 6 HOH B 52 552 55 HOH HOH . 
L 6 HOH B 53 553 132 HOH HOH . 
L 6 HOH B 54 554 130 HOH HOH . 
L 6 HOH B 55 555 15 HOH HOH . 
L 6 HOH B 56 556 10 HOH HOH . 
L 6 HOH B 57 557 26 HOH HOH . 
L 6 HOH B 58 558 135 HOH HOH . 
L 6 HOH B 59 559 154 HOH HOH . 
L 6 HOH B 60 560 106 HOH HOH . 
L 6 HOH B 61 561 178 HOH HOH . 
L 6 HOH B 62 562 139 HOH HOH . 
L 6 HOH B 63 563 190 HOH HOH . 
L 6 HOH B 64 564 131 HOH HOH . 
L 6 HOH B 65 565 24 HOH HOH . 
L 6 HOH B 66 566 42 HOH HOH . 
L 6 HOH B 67 567 44 HOH HOH . 
L 6 HOH B 68 568 157 HOH HOH . 
L 6 HOH B 69 569 133 HOH HOH . 
L 6 HOH B 70 570 89 HOH HOH . 
L 6 HOH B 71 571 2 HOH HOH . 
L 6 HOH B 72 572 34 HOH HOH . 
L 6 HOH B 73 573 97 HOH HOH . 
L 6 HOH B 74 574 43 HOH HOH . 
L 6 HOH B 75 575 50 HOH HOH . 
L 6 HOH B 76 576 49 HOH HOH . 
L 6 HOH B 77 577 172 HOH HOH . 
L 6 HOH B 78 578 115 HOH HOH . 
L 6 HOH B 79 579 153 HOH HOH . 
L 6 HOH B 80 580 184 HOH HOH . 
L 6 HOH B 81 581 164 HOH HOH . 
L 6 HOH B 82 582 149 HOH HOH . 
L 6 HOH B 83 583 30 HOH HOH . 
L 6 HOH B 84 584 143 HOH HOH . 
L 6 HOH B 85 585 159 HOH HOH . 
L 6 HOH B 86 586 187 HOH HOH . 
L 6 HOH B 87 587 123 HOH HOH . 
L 6 HOH B 88 588 111 HOH HOH . 
L 6 HOH B 89 589 163 HOH HOH . 
L 6 HOH B 90 590 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 TJ1 . D . J 5 -0.958 12.056 -34.911 0.16 30.24 ? C4 TJ1 401 B 1 
HETATM 2 C C4 TJ1 . E . J 5 -0.947 12.064 -34.913 0.16 30.22 ? C4 TJ1 401 B 1 
HETATM 3 C C4 TJ1 . F . J 5 -0.947 12.064 -34.913 0.16 30.22 ? C4 TJ1 401 B 1 
HETATM 4 N N1 TJ1 . D . J 5 -0.547 14.026 -35.673 0.16 29.04 ? N1 TJ1 401 B 1 
HETATM 5 N N1 TJ1 . E . J 5 -0.545 14.034 -35.68 0.16 29.06 ? N1 TJ1 401 B 1 
HETATM 6 N N1 TJ1 . F . J 5 -0.545 14.034 -35.68 0.16 29.06 ? N1 TJ1 401 B 1 
HETATM 7 O O1 TJ1 . D . J 5 -0.786 10.636 -34.584 0.16 32.47 ? O1 TJ1 401 B 1 
HETATM 8 O O1 TJ1 . E . J 5 -0.769 10.646 -34.586 0.16 32.41 ? O1 TJ1 401 B 1 
HETATM 9 O O1 TJ1 . F . J 5 -0.769 10.646 -34.586 0.16 32.41 ? O1 TJ1 401 B 1 
HETATM 10 N N TJ1 . D . J 5 -2.047 12.773 -34.586 0.16 28.7 ? N TJ1 401 B 1 
HETATM 11 N N TJ1 . E . J 5 -2.038 12.778 -34.587 0.16 28.69 ? N TJ1 401 B 1 
HETATM 12 N N TJ1 . F . J 5 -2.038 12.778 -34.587 0.16 28.69 ? N TJ1 401 B 1 
HETATM 13 O O TJ1 . D . J 5 -0.046 12.795 -35.562 0.16 29.86 ? O TJ1 401 B 1 
HETATM 14 O O TJ1 . E . J 5 -0.04 12.805 -35.568 0.16 29.87 ? O TJ1 401 B 1 
HETATM 15 O O TJ1 . F . J 5 -0.04 12.805 -35.568 0.16 29.87 ? O TJ1 401 B 1 
HETATM 16 C C3 TJ1 . D . J 5 -1.772 14.011 -35.081 0.16 28.87 ? C3 TJ1 401 B 1 
HETATM 17 C C3 TJ1 . E . J 5 -1.767 14.017 -35.084 0.16 28.87 ? C3 TJ1 401 B 1 
HETATM 18 C C3 TJ1 . F . J 5 -1.767 14.017 -35.084 0.16 28.87 ? C3 TJ1 401 B 1 
HETATM 19 C C1 TJ1 . D . J 5 -2.675 15.178 -34.976 0.16 29.26 ? C1 TJ1 401 B 1 
HETATM 20 C C1 TJ1 . E . J 5 -2.673 15.182 -34.978 0.16 29.27 ? C1 TJ1 401 B 1 
HETATM 21 C C1 TJ1 . F . J 5 -2.673 15.182 -34.978 0.16 29.27 ? C1 TJ1 401 B 1 
HETATM 22 C C2 TJ1 . D . J 5 -1.88 16.464 -35.123 0.16 28.46 ? C2 TJ1 401 B 1 
HETATM 23 C C2 TJ1 . E . J 5 -1.879 16.468 -35.125 0.16 28.47 ? C2 TJ1 401 B 1 
HETATM 24 C C2 TJ1 . F . J 5 -1.879 16.468 -35.125 0.16 28.47 ? C2 TJ1 401 B 1 
HETATM 25 C C TJ1 . D . J 5 -3.383 15.137 -33.63 0.16 30.4 ? C TJ1 401 B 1 
HETATM 26 C C TJ1 . E . J 5 -3.38 15.14 -33.632 0.16 30.4 ? C TJ1 401 B 1 
HETATM 27 C C TJ1 . F . J 5 -3.38 15.14 -33.632 0.16 30.4 ? C TJ1 401 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#