data_5QY3 # _model_server_result.job_id cNFNUj04yxeMQ9tT7gdkTQ _model_server_result.datetime_utc '2024-11-01 07:20:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qy3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5QY3 # _exptl.entry_id 5QY3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.206 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[(1~{S})-1-azanylpropyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.44 _cell.angle_gamma 90 _cell.entry_id 5QY3 _cell.length_a 88.887 _cell.length_b 81.542 _cell.length_c 93.567 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QY3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N O' _chem_comp.formula_weight 151.206 _chem_comp.id SYG _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1~{S})-1-azanylpropyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 SYG doub 306 n y C6 C5 SYG sing 307 n y C7 C8 SYG sing 308 n y C5 C4 SYG doub 309 n y C8 O SYG sing 310 n n C8 C3 SYG doub 311 n y N C2 SYG sing 312 n n C4 C3 SYG sing 313 n y C3 C2 SYG sing 314 n n C2 C1 SYG sing 315 n n C1 C SYG sing 316 n n C4 H1 SYG sing 317 n n C5 H2 SYG sing 318 n n C6 H3 SYG sing 319 n n C7 H4 SYG sing 320 n n O H5 SYG sing 321 n n C2 H6 SYG sing 322 n n N H7 SYG sing 323 n n N H8 SYG sing 324 n n C1 H10 SYG sing 325 n n C1 H11 SYG sing 326 n n C H12 SYG sing 327 n n C H13 SYG sing 328 n n C H14 SYG sing 329 n n # _atom_sites.entry_id 5QY3 _atom_sites.fract_transf_matrix[1][1] 0.01125 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003751 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012264 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 2301 2301 SO4 SO4 . D 3 SO4 A 1 2302 2401 SO4 SO4 . E 4 PGR A 1 2303 2501 PGR PGR . F 4 PGR A 1 2304 2601 PGR PGR . G 5 SYG B 1 401 401 SYG XXX . H 6 HOH A 1 2401 134 HOH HOH . H 6 HOH A 2 2402 60 HOH HOH . H 6 HOH A 3 2403 89 HOH HOH . H 6 HOH A 4 2404 67 HOH HOH . H 6 HOH A 5 2405 124 HOH HOH . H 6 HOH A 6 2406 11 HOH HOH . H 6 HOH A 7 2407 110 HOH HOH . H 6 HOH A 8 2408 86 HOH HOH . H 6 HOH A 9 2409 73 HOH HOH . H 6 HOH A 10 2410 3 HOH HOH . H 6 HOH A 11 2411 57 HOH HOH . H 6 HOH A 12 2412 129 HOH HOH . H 6 HOH A 13 2413 106 HOH HOH . H 6 HOH A 14 2414 33 HOH HOH . H 6 HOH A 15 2415 48 HOH HOH . H 6 HOH A 16 2416 63 HOH HOH . H 6 HOH A 17 2417 113 HOH HOH . H 6 HOH A 18 2418 107 HOH HOH . H 6 HOH A 19 2419 29 HOH HOH . H 6 HOH A 20 2420 79 HOH HOH . H 6 HOH A 21 2421 37 HOH HOH . H 6 HOH A 22 2422 14 HOH HOH . H 6 HOH A 23 2423 111 HOH HOH . H 6 HOH A 24 2424 35 HOH HOH . H 6 HOH A 25 2425 12 HOH HOH . H 6 HOH A 26 2426 19 HOH HOH . H 6 HOH A 27 2427 9 HOH HOH . H 6 HOH A 28 2428 100 HOH HOH . H 6 HOH A 29 2429 2 HOH HOH . H 6 HOH A 30 2430 21 HOH HOH . H 6 HOH A 31 2431 112 HOH HOH . H 6 HOH A 32 2432 7 HOH HOH . H 6 HOH A 33 2433 44 HOH HOH . H 6 HOH A 34 2434 95 HOH HOH . H 6 HOH A 35 2435 88 HOH HOH . H 6 HOH A 36 2436 62 HOH HOH . H 6 HOH A 37 2437 41 HOH HOH . H 6 HOH A 38 2438 91 HOH HOH . H 6 HOH A 39 2439 42 HOH HOH . H 6 HOH A 40 2440 130 HOH HOH . H 6 HOH A 41 2441 15 HOH HOH . H 6 HOH A 42 2442 87 HOH HOH . H 6 HOH A 43 2443 115 HOH HOH . H 6 HOH A 44 2444 75 HOH HOH . H 6 HOH A 45 2445 135 HOH HOH . H 6 HOH A 46 2446 98 HOH HOH . H 6 HOH A 47 2447 52 HOH HOH . H 6 HOH A 48 2448 32 HOH HOH . H 6 HOH A 49 2449 97 HOH HOH . H 6 HOH A 50 2450 4 HOH HOH . H 6 HOH A 51 2451 74 HOH HOH . H 6 HOH A 52 2452 90 HOH HOH . H 6 HOH A 53 2453 31 HOH HOH . H 6 HOH A 54 2454 101 HOH HOH . H 6 HOH A 55 2455 58 HOH HOH . H 6 HOH A 56 2456 61 HOH HOH . H 6 HOH A 57 2457 64 HOH HOH . H 6 HOH A 58 2458 5 HOH HOH . H 6 HOH A 59 2459 8 HOH HOH . H 6 HOH A 60 2460 108 HOH HOH . H 6 HOH A 61 2461 119 HOH HOH . H 6 HOH A 62 2462 102 HOH HOH . H 6 HOH A 63 2463 34 HOH HOH . H 6 HOH A 64 2464 18 HOH HOH . H 6 HOH A 65 2465 53 HOH HOH . H 6 HOH A 66 2466 76 HOH HOH . H 6 HOH A 67 2467 72 HOH HOH . H 6 HOH A 68 2468 132 HOH HOH . H 6 HOH A 69 2469 133 HOH HOH . H 6 HOH A 70 2470 94 HOH HOH . H 6 HOH A 71 2471 51 HOH HOH . I 6 HOH B 1 501 136 HOH HOH . I 6 HOH B 2 502 50 HOH HOH . I 6 HOH B 3 503 71 HOH HOH . I 6 HOH B 4 504 47 HOH HOH . I 6 HOH B 5 505 105 HOH HOH . I 6 HOH B 6 506 25 HOH HOH . I 6 HOH B 7 507 123 HOH HOH . I 6 HOH B 8 508 131 HOH HOH . I 6 HOH B 9 509 126 HOH HOH . I 6 HOH B 10 510 70 HOH HOH . I 6 HOH B 11 511 23 HOH HOH . I 6 HOH B 12 512 82 HOH HOH . I 6 HOH B 13 513 56 HOH HOH . I 6 HOH B 14 514 85 HOH HOH . I 6 HOH B 15 515 104 HOH HOH . I 6 HOH B 16 516 20 HOH HOH . I 6 HOH B 17 517 65 HOH HOH . I 6 HOH B 18 518 43 HOH HOH . I 6 HOH B 19 519 127 HOH HOH . I 6 HOH B 20 520 78 HOH HOH . I 6 HOH B 21 521 83 HOH HOH . I 6 HOH B 22 522 16 HOH HOH . I 6 HOH B 23 523 122 HOH HOH . I 6 HOH B 24 524 77 HOH HOH . I 6 HOH B 25 525 38 HOH HOH . I 6 HOH B 26 526 125 HOH HOH . I 6 HOH B 27 527 26 HOH HOH . I 6 HOH B 28 528 92 HOH HOH . I 6 HOH B 29 529 66 HOH HOH . I 6 HOH B 30 530 10 HOH HOH . I 6 HOH B 31 531 30 HOH HOH . I 6 HOH B 32 532 24 HOH HOH . I 6 HOH B 33 533 45 HOH HOH . I 6 HOH B 34 534 114 HOH HOH . I 6 HOH B 35 535 109 HOH HOH . I 6 HOH B 36 536 103 HOH HOH . I 6 HOH B 37 537 93 HOH HOH . I 6 HOH B 38 538 59 HOH HOH . I 6 HOH B 39 539 68 HOH HOH . I 6 HOH B 40 540 80 HOH HOH . I 6 HOH B 41 541 55 HOH HOH . I 6 HOH B 42 542 121 HOH HOH . I 6 HOH B 43 543 96 HOH HOH . I 6 HOH B 44 544 54 HOH HOH . I 6 HOH B 45 545 36 HOH HOH . I 6 HOH B 46 546 46 HOH HOH . I 6 HOH B 47 547 69 HOH HOH . I 6 HOH B 48 548 17 HOH HOH . I 6 HOH B 49 549 22 HOH HOH . I 6 HOH B 50 550 40 HOH HOH . I 6 HOH B 51 551 28 HOH HOH . I 6 HOH B 52 552 128 HOH HOH . I 6 HOH B 53 553 49 HOH HOH . I 6 HOH B 54 554 27 HOH HOH . I 6 HOH B 55 555 6 HOH HOH . I 6 HOH B 56 556 99 HOH HOH . I 6 HOH B 57 557 120 HOH HOH . I 6 HOH B 58 558 13 HOH HOH . I 6 HOH B 59 559 84 HOH HOH . I 6 HOH B 60 560 116 HOH HOH . I 6 HOH B 61 561 81 HOH HOH . I 6 HOH B 62 562 117 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SYG . D . G 5 14.86 25.503 -22.361 0.16 43.98 ? C4 SYG 401 B 1 HETATM 2 C C4 SYG . E . G 5 14.861 25.506 -22.363 0.16 44.09 ? C4 SYG 401 B 1 HETATM 3 C C4 SYG . F . G 5 14.86 25.503 -22.361 0.16 43.99 ? C4 SYG 401 B 1 HETATM 4 C C5 SYG . D . G 5 15.245 24.423 -23.144 0.16 44.14 ? C5 SYG 401 B 1 HETATM 5 C C5 SYG . E . G 5 15.246 24.428 -23.149 0.16 44.24 ? C5 SYG 401 B 1 HETATM 6 C C5 SYG . F . G 5 15.245 24.423 -23.144 0.16 44.15 ? C5 SYG 401 B 1 HETATM 7 C C6 SYG . D . G 5 14.308 23.779 -23.939 0.16 44.24 ? C6 SYG 401 B 1 HETATM 8 C C6 SYG . E . G 5 14.31 23.786 -23.947 0.16 44.34 ? C6 SYG 401 B 1 HETATM 9 C C6 SYG . F . G 5 14.308 23.779 -23.939 0.16 44.24 ? C6 SYG 401 B 1 HETATM 10 C C7 SYG . D . G 5 12.992 24.217 -23.955 0.16 43.34 ? C7 SYG 401 B 1 HETATM 11 C C7 SYG . E . G 5 12.995 24.225 -23.963 0.16 43.44 ? C7 SYG 401 B 1 HETATM 12 C C7 SYG . F . G 5 12.992 24.217 -23.955 0.16 43.35 ? C7 SYG 401 B 1 HETATM 13 C C8 SYG . D . G 5 12.609 25.298 -23.177 0.16 43.77 ? C8 SYG 401 B 1 HETATM 14 C C8 SYG . E . G 5 12.611 25.304 -23.182 0.16 43.88 ? C8 SYG 401 B 1 HETATM 15 C C8 SYG . F . G 5 12.609 25.298 -23.177 0.16 43.77 ? C8 SYG 401 B 1 HETATM 16 O O SYG . D . G 5 11.311 25.701 -23.215 0.16 43.27 ? O SYG 401 B 1 HETATM 17 O O SYG . E . G 5 11.313 25.708 -23.22 0.16 43.4 ? O SYG 401 B 1 HETATM 18 O O SYG . F . G 5 11.311 25.701 -23.215 0.16 43.27 ? O SYG 401 B 1 HETATM 19 C C3 SYG . D . G 5 13.542 25.945 -22.377 0.16 43.79 ? C3 SYG 401 B 1 HETATM 20 C C3 SYG . E . G 5 13.543 25.948 -22.38 0.16 43.89 ? C3 SYG 401 B 1 HETATM 21 C C3 SYG . F . G 5 13.542 25.945 -22.378 0.16 43.79 ? C3 SYG 401 B 1 HETATM 22 C C2 SYG . D . G 5 13.168 27.105 -21.534 0.16 42.46 ? C2 SYG 401 B 1 HETATM 23 C C2 SYG . E . G 5 13.169 27.106 -21.534 0.16 42.55 ? C2 SYG 401 B 1 HETATM 24 C C2 SYG . F . G 5 13.168 27.105 -21.535 0.16 42.47 ? C2 SYG 401 B 1 HETATM 25 N N SYG . D . G 5 12.699 28.193 -22.415 0.16 42.9 1 N SYG 401 B 1 HETATM 26 N N SYG . E . G 5 12.7 28.196 -22.412 0.16 42.99 1 N SYG 401 B 1 HETATM 27 N N SYG . F . G 5 12.699 28.193 -22.416 0.16 42.9 1 N SYG 401 B 1 HETATM 28 C C1 SYG . D . G 5 12.084 26.726 -20.527 0.16 42.28 ? C1 SYG 401 B 1 HETATM 29 C C1 SYG . E . G 5 12.084 26.725 -20.528 0.16 42.36 ? C1 SYG 401 B 1 HETATM 30 C C1 SYG . F . G 5 12.084 26.726 -20.527 0.16 42.28 ? C1 SYG 401 B 1 HETATM 31 C C SYG . D . G 5 12.592 25.778 -19.457 0.16 41.33 ? C SYG 401 B 1 HETATM 32 C C SYG . E . G 5 12.592 25.777 -19.458 0.16 41.41 ? C SYG 401 B 1 HETATM 33 C C SYG . F . G 5 12.592 25.778 -19.458 0.16 41.33 ? C SYG 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #