data_5QY4 # _model_server_result.job_id QofpIUuQnYcdL25afRgppQ _model_server_result.datetime_utc '2024-11-12 21:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":401}' # _entry.id 5QY4 # _exptl.entry_id 5QY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.214 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ethyl 1,3-dihydro-2H-pyrrolo[3,4-c]pyridine-2-carboxylate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.95 _cell.angle_gamma 90 _cell.entry_id 5QY4 _cell.length_a 89.301 _cell.length_b 81.865 _cell.length_c 94.408 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 G N N # _chem_comp.formula 'C10 H12 N2 O2' _chem_comp.formula_weight 192.214 _chem_comp.id T9S _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl 1,3-dihydro-2H-pyrrolo[3,4-c]pyridine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C6 T9S doub 306 n y N1 C7 T9S sing 307 n y C6 C5 T9S sing 308 n y C7 C8 T9S doub 309 n y C5 C4 T9S doub 310 n y C8 C4 T9S sing 311 n y C8 C9 T9S sing 312 n n C4 C3 T9S sing 313 n n C9 N T9S sing 314 n n C3 N T9S sing 315 n n N C2 T9S sing 316 n n C2 O1 T9S doub 317 n n C2 O T9S sing 318 n n O C1 T9S sing 319 n n C1 C T9S sing 320 n n C5 H1 T9S sing 321 n n C6 H2 T9S sing 322 n n C7 H3 T9S sing 323 n n C9 H4 T9S sing 324 n n C9 H5 T9S sing 325 n n C1 H6 T9S sing 326 n n C1 H7 T9S sing 327 n n C H8 T9S sing 328 n n C H9 T9S sing 329 n n C H10 T9S sing 330 n n C3 H11 T9S sing 331 n n C3 H12 T9S sing 332 n n # _atom_sites.entry_id 5QY4 _atom_sites.fract_transf_matrix[1][1] 0.011198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003845 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 T9S A 1 2101 2101 T9S XXX . D 4 SO4 A 1 2102 2201 SO4 SO4 . E 5 PGR A 1 2103 2301 PGR PGR . F 5 PGR A 1 2104 2401 PGR PGR . G 3 T9S B 1 401 401 T9S XXX . H 4 SO4 B 1 402 501 SO4 SO4 . I 6 HOH A 1 2201 116 HOH HOH . I 6 HOH A 2 2202 111 HOH HOH . I 6 HOH A 3 2203 112 HOH HOH . I 6 HOH A 4 2204 30 HOH HOH . I 6 HOH A 5 2205 95 HOH HOH . I 6 HOH A 6 2206 4 HOH HOH . I 6 HOH A 7 2207 48 HOH HOH . I 6 HOH A 8 2208 100 HOH HOH . I 6 HOH A 9 2209 41 HOH HOH . I 6 HOH A 10 2210 10 HOH HOH . I 6 HOH A 11 2211 36 HOH HOH . I 6 HOH A 12 2212 25 HOH HOH . I 6 HOH A 13 2213 70 HOH HOH . I 6 HOH A 14 2214 19 HOH HOH . I 6 HOH A 15 2215 59 HOH HOH . I 6 HOH A 16 2216 33 HOH HOH . I 6 HOH A 17 2217 37 HOH HOH . I 6 HOH A 18 2218 14 HOH HOH . I 6 HOH A 19 2219 12 HOH HOH . I 6 HOH A 20 2220 56 HOH HOH . I 6 HOH A 21 2221 76 HOH HOH . I 6 HOH A 22 2222 103 HOH HOH . I 6 HOH A 23 2223 114 HOH HOH . I 6 HOH A 24 2224 78 HOH HOH . I 6 HOH A 25 2225 96 HOH HOH . I 6 HOH A 26 2226 2 HOH HOH . I 6 HOH A 27 2227 91 HOH HOH . I 6 HOH A 28 2228 17 HOH HOH . I 6 HOH A 29 2229 5 HOH HOH . I 6 HOH A 30 2230 90 HOH HOH . I 6 HOH A 31 2231 81 HOH HOH . I 6 HOH A 32 2232 6 HOH HOH . I 6 HOH A 33 2233 16 HOH HOH . I 6 HOH A 34 2234 113 HOH HOH . I 6 HOH A 35 2235 38 HOH HOH . I 6 HOH A 36 2236 53 HOH HOH . I 6 HOH A 37 2237 66 HOH HOH . I 6 HOH A 38 2238 68 HOH HOH . I 6 HOH A 39 2239 24 HOH HOH . I 6 HOH A 40 2240 18 HOH HOH . I 6 HOH A 41 2241 71 HOH HOH . I 6 HOH A 42 2242 35 HOH HOH . I 6 HOH A 43 2243 7 HOH HOH . I 6 HOH A 44 2244 21 HOH HOH . I 6 HOH A 45 2245 69 HOH HOH . I 6 HOH A 46 2246 67 HOH HOH . I 6 HOH A 47 2247 3 HOH HOH . I 6 HOH A 48 2248 47 HOH HOH . I 6 HOH A 49 2249 80 HOH HOH . I 6 HOH A 50 2250 43 HOH HOH . I 6 HOH A 51 2251 84 HOH HOH . I 6 HOH A 52 2252 93 HOH HOH . I 6 HOH A 53 2253 51 HOH HOH . I 6 HOH A 54 2254 11 HOH HOH . I 6 HOH A 55 2255 60 HOH HOH . I 6 HOH A 56 2256 106 HOH HOH . I 6 HOH A 57 2257 115 HOH HOH . I 6 HOH A 58 2258 108 HOH HOH . I 6 HOH A 59 2259 44 HOH HOH . J 6 HOH B 1 501 99 HOH HOH . J 6 HOH B 2 502 72 HOH HOH . J 6 HOH B 3 503 50 HOH HOH . J 6 HOH B 4 504 88 HOH HOH . J 6 HOH B 5 505 63 HOH HOH . J 6 HOH B 6 506 97 HOH HOH . J 6 HOH B 7 507 28 HOH HOH . J 6 HOH B 8 508 62 HOH HOH . J 6 HOH B 9 509 29 HOH HOH . J 6 HOH B 10 510 83 HOH HOH . J 6 HOH B 11 511 8 HOH HOH . J 6 HOH B 12 512 110 HOH HOH . J 6 HOH B 13 513 77 HOH HOH . J 6 HOH B 14 514 40 HOH HOH . J 6 HOH B 15 515 61 HOH HOH . J 6 HOH B 16 516 82 HOH HOH . J 6 HOH B 17 517 94 HOH HOH . J 6 HOH B 18 518 45 HOH HOH . J 6 HOH B 19 519 64 HOH HOH . J 6 HOH B 20 520 55 HOH HOH . J 6 HOH B 21 521 46 HOH HOH . J 6 HOH B 22 522 58 HOH HOH . J 6 HOH B 23 523 52 HOH HOH . J 6 HOH B 24 524 9 HOH HOH . J 6 HOH B 25 525 20 HOH HOH . J 6 HOH B 26 526 27 HOH HOH . J 6 HOH B 27 527 31 HOH HOH . J 6 HOH B 28 528 89 HOH HOH . J 6 HOH B 29 529 85 HOH HOH . J 6 HOH B 30 530 34 HOH HOH . J 6 HOH B 31 531 23 HOH HOH . J 6 HOH B 32 532 13 HOH HOH . J 6 HOH B 33 533 98 HOH HOH . J 6 HOH B 34 534 73 HOH HOH . J 6 HOH B 35 535 86 HOH HOH . J 6 HOH B 36 536 117 HOH HOH . J 6 HOH B 37 537 49 HOH HOH . J 6 HOH B 38 538 74 HOH HOH . J 6 HOH B 39 539 39 HOH HOH . J 6 HOH B 40 540 65 HOH HOH . J 6 HOH B 41 541 32 HOH HOH . J 6 HOH B 42 542 42 HOH HOH . J 6 HOH B 43 543 54 HOH HOH . J 6 HOH B 44 544 22 HOH HOH . J 6 HOH B 45 545 15 HOH HOH . J 6 HOH B 46 546 109 HOH HOH . J 6 HOH B 47 547 87 HOH HOH . J 6 HOH B 48 548 75 HOH HOH . J 6 HOH B 49 549 26 HOH HOH . J 6 HOH B 50 550 79 HOH HOH . J 6 HOH B 51 551 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 T9S . D . G 3 10.953 1.464 -11.066 0.14 26.5 ? C4 T9S 401 B 1 HETATM 2 C C4 T9S . E . G 3 10.931 1.571 -11.159 0.09 29.75 ? C4 T9S 401 B 1 HETATM 3 C C4 T9S . F . G 3 10.953 1.464 -11.067 0.14 26.52 ? C4 T9S 401 B 1 HETATM 4 C C5 T9S . D . G 3 11.125 2.36 -12.106 0.14 25.93 ? C5 T9S 401 B 1 HETATM 5 C C5 T9S . E . G 3 11.101 2.504 -12.167 0.09 29.48 ? C5 T9S 401 B 1 HETATM 6 C C5 T9S . F . G 3 11.125 2.36 -12.106 0.14 25.95 ? C5 T9S 401 B 1 HETATM 7 C C6 T9S . D . G 3 11.356 1.844 -13.383 0.14 25.38 ? C6 T9S 401 B 1 HETATM 8 C C6 T9S . E . G 3 11.354 2.029 -13.455 0.09 29.14 ? C6 T9S 401 B 1 HETATM 9 C C6 T9S . F . G 3 11.356 1.844 -13.384 0.14 25.4 ? C6 T9S 401 B 1 HETATM 10 N N1 T9S . D . G 3 11.414 0.521 -13.59 0.14 24.86 ? N1 T9S 401 B 1 HETATM 11 N N1 T9S . E . G 3 11.434 0.71 -13.699 0.09 28.52 ? N1 T9S 401 B 1 HETATM 12 N N1 T9S . F . G 3 11.414 0.521 -13.591 0.14 24.88 ? N1 T9S 401 B 1 HETATM 13 C C7 T9S . D . G 3 11.236 -0.36 -12.594 0.14 26.06 ? C7 T9S 401 B 1 HETATM 14 C C7 T9S . E . G 3 11.263 -0.202 -12.73 0.09 29.37 ? C7 T9S 401 B 1 HETATM 15 C C7 T9S . F . G 3 11.236 -0.36 -12.595 0.14 26.08 ? C7 T9S 401 B 1 HETATM 16 C C8 T9S . D . G 3 11.021 0.128 -11.309 0.14 25.56 ? C8 T9S 401 B 1 HETATM 17 C C8 T9S . E . G 3 11.018 0.244 -11.438 0.09 29.22 ? C8 T9S 401 B 1 HETATM 18 C C8 T9S . F . G 3 11.021 0.127 -11.31 0.14 25.58 ? C8 T9S 401 B 1 HETATM 19 C C9 T9S . D . G 3 10.797 -0.64 -10.044 0.14 26.93 ? C9 T9S 401 B 1 HETATM 20 C C9 T9S . E . G 3 10.795 -0.572 -10.199 0.09 29.9 ? C9 T9S 401 B 1 HETATM 21 C C9 T9S . F . G 3 10.797 -0.64 -10.045 0.14 26.95 ? C9 T9S 401 B 1 HETATM 22 O O1 T9S . D . G 3 9.458 -0.935 -7.551 0.14 30.9 ? O1 T9S 401 B 1 HETATM 23 O O1 T9S . E . G 3 9.538 -0.96 -7.693 0.09 32.62 ? O1 T9S 401 B 1 HETATM 24 O O1 T9S . F . G 3 9.458 -0.935 -7.552 0.14 30.92 ? O1 T9S 401 B 1 HETATM 25 C C2 T9S . D . G 3 9.811 0.171 -7.929 0.14 30.88 ? C2 T9S 401 B 1 HETATM 26 C C2 T9S . E . G 3 9.852 0.168 -8.039 0.09 32.62 ? C2 T9S 401 B 1 HETATM 27 C C2 T9S . F . G 3 9.812 0.171 -7.929 0.14 30.9 ? C2 T9S 401 B 1 HETATM 28 O O T9S . D . G 3 9.591 1.283 -7.03 0.14 32.33 ? O T9S 401 B 1 HETATM 29 O O T9S . E . G 3 9.62 1.253 -7.106 0.09 33.39 ? O T9S 401 B 1 HETATM 30 O O T9S . F . G 3 9.591 1.283 -7.03 0.14 32.35 ? O T9S 401 B 1 HETATM 31 C C1 T9S . D . G 3 9.069 0.97 -5.748 0.14 33.06 ? C1 T9S 401 B 1 HETATM 32 C C1 T9S . E . G 3 9.118 0.936 -5.813 0.09 33.74 ? C1 T9S 401 B 1 HETATM 33 C C1 T9S . F . G 3 9.069 0.97 -5.749 0.14 33.08 ? C1 T9S 401 B 1 HETATM 34 C C T9S . D . G 3 8.122 -0.196 -5.916 0.14 33.93 ? C T9S 401 B 1 HETATM 35 C C T9S . E . G 3 7.987 -0.057 -5.962 0.09 34.24 ? C T9S 401 B 1 HETATM 36 C C T9S . F . G 3 8.123 -0.198 -5.917 0.14 33.94 ? C T9S 401 B 1 HETATM 37 N N T9S . D . G 3 10.39 0.408 -9.103 0.14 28.46 ? N T9S 401 B 1 HETATM 38 N N T9S . E . G 3 10.394 0.445 -9.221 0.09 30.98 ? N T9S 401 B 1 HETATM 39 N N T9S . F . G 3 10.391 0.408 -9.104 0.14 28.48 ? N T9S 401 B 1 HETATM 40 C C3 T9S . D . G 3 10.678 1.752 -9.604 0.14 26.97 ? C3 T9S 401 B 1 HETATM 41 C C3 T9S . E . G 3 10.64 1.809 -9.696 0.09 30.15 ? C3 T9S 401 B 1 HETATM 42 C C3 T9S . F . G 3 10.678 1.752 -9.605 0.14 26.99 ? C3 T9S 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 42 #