data_5QY7 # _model_server_result.job_id ZMlADf5KlE0Dz92wdIxWqA _model_server_result.datetime_utc '2024-11-22 06:08:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qy7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 5QY7 # _exptl.entry_id 5QY7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1S,3S)-2-methyl-2,3-dihydro-1H-isoindole-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.57 _cell.angle_gamma 90 _cell.entry_id 5QY7 _cell.length_a 87.768 _cell.length_b 81.626 _cell.length_c 93.48 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QY7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id USJ _chem_comp.mon_nstd_flag . _chem_comp.name (1S,3S)-2-methyl-2,3-dihydro-1H-isoindole-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 USJ doub 374 n y C4 C5 USJ sing 375 n y C3 C2 USJ sing 376 n y C5 C6 USJ doub 377 n y C2 C1 USJ sing 378 n n C2 C7 USJ doub 379 n y C1 O1 USJ sing 380 n n C1 N USJ sing 381 n n C7 C6 USJ sing 382 n y C7 C8 USJ sing 383 n n O C8 USJ sing 384 n n C N USJ sing 385 n n N C8 USJ sing 386 n n C4 H1 USJ sing 387 n n C5 H2 USJ sing 388 n n C6 H3 USJ sing 389 n n C8 H4 USJ sing 390 n n O1 H5 USJ sing 391 n n C1 H6 USJ sing 392 n n C H8 USJ sing 393 n n C H9 USJ sing 394 n n C H10 USJ sing 395 n n O H11 USJ sing 396 n n C3 H12 USJ sing 397 n n # _atom_sites.entry_id 5QY7 _atom_sites.fract_transf_matrix[1][1] 0.011394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003827 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 2101 2101 SO4 SO4 . D 3 SO4 A 1 2102 2201 SO4 SO4 . E 4 PGR A 1 2103 2301 PGR PGR . F 5 USJ B 1 401 401 USJ XXX . G 6 HOH A 1 2201 96 HOH HOH . G 6 HOH A 2 2202 72 HOH HOH . G 6 HOH A 3 2203 55 HOH HOH . G 6 HOH A 4 2204 44 HOH HOH . G 6 HOH A 5 2205 77 HOH HOH . G 6 HOH A 6 2206 65 HOH HOH . G 6 HOH A 7 2207 43 HOH HOH . G 6 HOH A 8 2208 57 HOH HOH . G 6 HOH A 9 2209 12 HOH HOH . G 6 HOH A 10 2210 17 HOH HOH . G 6 HOH A 11 2211 28 HOH HOH . G 6 HOH A 12 2212 92 HOH HOH . G 6 HOH A 13 2213 82 HOH HOH . G 6 HOH A 14 2214 88 HOH HOH . G 6 HOH A 15 2215 15 HOH HOH . G 6 HOH A 16 2216 6 HOH HOH . G 6 HOH A 17 2217 35 HOH HOH . G 6 HOH A 18 2218 10 HOH HOH . G 6 HOH A 19 2219 78 HOH HOH . G 6 HOH A 20 2220 51 HOH HOH . G 6 HOH A 21 2221 68 HOH HOH . G 6 HOH A 22 2222 69 HOH HOH . G 6 HOH A 23 2223 66 HOH HOH . G 6 HOH A 24 2224 18 HOH HOH . G 6 HOH A 25 2225 14 HOH HOH . G 6 HOH A 26 2226 2 HOH HOH . G 6 HOH A 27 2227 13 HOH HOH . G 6 HOH A 28 2228 4 HOH HOH . G 6 HOH A 29 2229 54 HOH HOH . G 6 HOH A 30 2230 3 HOH HOH . G 6 HOH A 31 2231 75 HOH HOH . G 6 HOH A 32 2232 33 HOH HOH . G 6 HOH A 33 2233 39 HOH HOH . G 6 HOH A 34 2234 76 HOH HOH . G 6 HOH A 35 2235 71 HOH HOH . G 6 HOH A 36 2236 60 HOH HOH . G 6 HOH A 37 2237 80 HOH HOH . G 6 HOH A 38 2238 79 HOH HOH . G 6 HOH A 39 2239 29 HOH HOH . G 6 HOH A 40 2240 74 HOH HOH . G 6 HOH A 41 2241 52 HOH HOH . G 6 HOH A 42 2242 87 HOH HOH . G 6 HOH A 43 2243 81 HOH HOH . G 6 HOH A 44 2244 85 HOH HOH . G 6 HOH A 45 2245 95 HOH HOH . G 6 HOH A 46 2246 11 HOH HOH . G 6 HOH A 47 2247 84 HOH HOH . H 6 HOH B 1 501 41 HOH HOH . H 6 HOH B 2 502 94 HOH HOH . H 6 HOH B 3 503 91 HOH HOH . H 6 HOH B 4 504 40 HOH HOH . H 6 HOH B 5 505 32 HOH HOH . H 6 HOH B 6 506 53 HOH HOH . H 6 HOH B 7 507 16 HOH HOH . H 6 HOH B 8 508 93 HOH HOH . H 6 HOH B 9 509 45 HOH HOH . H 6 HOH B 10 510 19 HOH HOH . H 6 HOH B 11 511 61 HOH HOH . H 6 HOH B 12 512 7 HOH HOH . H 6 HOH B 13 513 83 HOH HOH . H 6 HOH B 14 514 26 HOH HOH . H 6 HOH B 15 515 67 HOH HOH . H 6 HOH B 16 516 73 HOH HOH . H 6 HOH B 17 517 62 HOH HOH . H 6 HOH B 18 518 46 HOH HOH . H 6 HOH B 19 519 27 HOH HOH . H 6 HOH B 20 520 56 HOH HOH . H 6 HOH B 21 521 47 HOH HOH . H 6 HOH B 22 522 31 HOH HOH . H 6 HOH B 23 523 70 HOH HOH . H 6 HOH B 24 524 8 HOH HOH . H 6 HOH B 25 525 21 HOH HOH . H 6 HOH B 26 526 89 HOH HOH . H 6 HOH B 27 527 36 HOH HOH . H 6 HOH B 28 528 38 HOH HOH . H 6 HOH B 29 529 25 HOH HOH . H 6 HOH B 30 530 22 HOH HOH . H 6 HOH B 31 531 9 HOH HOH . H 6 HOH B 32 532 24 HOH HOH . H 6 HOH B 33 533 20 HOH HOH . H 6 HOH B 34 534 23 HOH HOH . H 6 HOH B 35 535 30 HOH HOH . H 6 HOH B 36 536 63 HOH HOH . H 6 HOH B 37 537 42 HOH HOH . H 6 HOH B 38 538 90 HOH HOH . H 6 HOH B 39 539 34 HOH HOH . H 6 HOH B 40 540 50 HOH HOH . H 6 HOH B 41 541 64 HOH HOH . H 6 HOH B 42 542 49 HOH HOH . H 6 HOH B 43 543 5 HOH HOH . H 6 HOH B 44 544 58 HOH HOH . H 6 HOH B 45 545 37 HOH HOH . H 6 HOH B 46 546 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 USJ . D . F 5 0.707 12.619 -36.142 0.19 39.92 ? C4 USJ 401 B 1 HETATM 2 C C4 USJ . E . F 5 0.707 12.619 -36.141 0.19 39.92 ? C4 USJ 401 B 1 HETATM 3 C C4 USJ . F . F 5 0.707 12.619 -36.141 0.19 39.92 ? C4 USJ 401 B 1 HETATM 4 C C5 USJ . D . F 5 0.062 11.591 -35.452 0.19 39.29 ? C5 USJ 401 B 1 HETATM 5 C C5 USJ . E . F 5 0.062 11.591 -35.452 0.19 39.29 ? C5 USJ 401 B 1 HETATM 6 C C5 USJ . F . F 5 0.062 11.591 -35.452 0.19 39.29 ? C5 USJ 401 B 1 HETATM 7 C C6 USJ . D . F 5 -1.098 11.844 -34.733 0.19 40.14 ? C6 USJ 401 B 1 HETATM 8 C C6 USJ . E . F 5 -1.098 11.844 -34.733 0.19 40.14 ? C6 USJ 401 B 1 HETATM 9 C C6 USJ . F . F 5 -1.098 11.844 -34.733 0.19 40.14 ? C6 USJ 401 B 1 HETATM 10 C C7 USJ . D . F 5 -1.581 13.139 -34.734 0.19 39.92 ? C7 USJ 401 B 1 HETATM 11 C C7 USJ . E . F 5 -1.581 13.139 -34.734 0.19 39.92 ? C7 USJ 401 B 1 HETATM 12 C C7 USJ . F . F 5 -1.581 13.139 -34.734 0.19 39.92 ? C7 USJ 401 B 1 HETATM 13 C C8 USJ . D . F 5 -2.772 13.628 -34.042 0.19 40.68 ? C8 USJ 401 B 1 HETATM 14 C C8 USJ . E . F 5 -2.772 13.628 -34.042 0.19 40.68 ? C8 USJ 401 B 1 HETATM 15 C C8 USJ . F . F 5 -2.772 13.628 -34.042 0.19 40.68 ? C8 USJ 401 B 1 HETATM 16 O O1 USJ . D . F 5 -0.821 16.491 -34.963 0.19 44.28 ? O1 USJ 401 B 1 HETATM 17 O O1 USJ . E . F 5 -0.821 16.492 -34.963 0.19 44.28 ? O1 USJ 401 B 1 HETATM 18 O O1 USJ . F . F 5 -0.821 16.492 -34.963 0.19 44.28 ? O1 USJ 401 B 1 HETATM 19 C C1 USJ . D . F 5 -1.691 15.401 -35.247 0.19 42.14 ? C1 USJ 401 B 1 HETATM 20 C C1 USJ . E . F 5 -1.691 15.402 -35.247 0.19 42.14 ? C1 USJ 401 B 1 HETATM 21 C C1 USJ . F . F 5 -1.691 15.402 -35.247 0.19 42.14 ? C1 USJ 401 B 1 HETATM 22 N N USJ . D . F 5 -2.635 15.105 -34.144 0.19 41.96 ? N USJ 401 B 1 HETATM 23 N N USJ . E . F 5 -2.635 15.105 -34.144 0.19 41.96 ? N USJ 401 B 1 HETATM 24 N N USJ . F . F 5 -2.635 15.105 -34.144 0.19 41.96 ? N USJ 401 B 1 HETATM 25 C C USJ . D . F 5 -3.909 15.822 -34.312 0.19 43.86 ? C USJ 401 B 1 HETATM 26 C C USJ . E . F 5 -3.909 15.822 -34.312 0.19 43.86 ? C USJ 401 B 1 HETATM 27 C C USJ . F . F 5 -3.909 15.822 -34.312 0.19 43.86 ? C USJ 401 B 1 HETATM 28 O O USJ . D . F 5 -3.913 13.078 -34.683 0.19 43.51 ? O USJ 401 B 1 HETATM 29 O O USJ . E . F 5 -3.913 13.078 -34.683 0.19 43.51 ? O USJ 401 B 1 HETATM 30 O O USJ . F . F 5 -3.913 13.078 -34.683 0.19 43.51 ? O USJ 401 B 1 HETATM 31 C C2 USJ . D . F 5 -0.956 14.137 -35.4 0.19 40.27 ? C2 USJ 401 B 1 HETATM 32 C C2 USJ . E . F 5 -0.956 14.137 -35.4 0.19 40.27 ? C2 USJ 401 B 1 HETATM 33 C C2 USJ . F . F 5 -0.956 14.137 -35.4 0.19 40.27 ? C2 USJ 401 B 1 HETATM 34 C C3 USJ . D . F 5 0.199 13.912 -36.126 0.19 39.93 ? C3 USJ 401 B 1 HETATM 35 C C3 USJ . E . F 5 0.199 13.913 -36.126 0.19 39.93 ? C3 USJ 401 B 1 HETATM 36 C C3 USJ . F . F 5 0.199 13.913 -36.126 0.19 39.93 ? C3 USJ 401 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #