data_5QY8 # _model_server_result.job_id m2YLOz0l3Urv8R7sNZhzYQ _model_server_result.datetime_utc '2024-11-22 06:02:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qy8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 5QY8 # _exptl.entry_id 5QY8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.212 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 1,3-benzodioxole-5-carbothioamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.56 _cell.angle_gamma 90 _cell.entry_id 5QY8 _cell.length_a 89.174 _cell.length_b 81.883 _cell.length_c 93.451 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QY8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H7 N O2 S' _chem_comp.formula_weight 181.212 _chem_comp.id TJV _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-benzodioxole-5-carbothioamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S C6 TJV doub 322 n n C C1 TJV doub 323 n y C C5 TJV sing 324 n y C1 C2 TJV sing 325 n y C6 C5 TJV sing 326 n n C6 N TJV sing 327 n n C5 C4 TJV doub 328 n y C2 O1 TJV sing 329 n n C2 C3 TJV doub 330 n y C4 C3 TJV sing 331 n y O1 C7 TJV sing 332 n n C3 O TJV sing 333 n n C7 O TJV sing 334 n n C4 H1 TJV sing 335 n n C7 H2 TJV sing 336 n n N H3 TJV sing 337 n n N H4 TJV sing 338 n n C H5 TJV sing 339 n n C1 H6 TJV sing 340 n n C7 H8 TJV sing 341 n n # _atom_sites.entry_id 5QY8 _atom_sites.fract_transf_matrix[1][1] 0.011214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012213 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011288 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TJV A 1 2101 2101 TJV XXX . D 4 SO4 A 1 2102 2201 SO4 SO4 . E 5 PGR A 1 2103 2301 PGR PGR . F 5 PGR A 1 2104 2401 PGR PGR . G 4 SO4 B 1 401 401 SO4 SO4 . H 6 HOH A 1 2201 143 HOH HOH . H 6 HOH A 2 2202 48 HOH HOH . H 6 HOH A 3 2203 144 HOH HOH . H 6 HOH A 4 2204 135 HOH HOH . H 6 HOH A 5 2205 133 HOH HOH . H 6 HOH A 6 2206 17 HOH HOH . H 6 HOH A 7 2207 120 HOH HOH . H 6 HOH A 8 2208 91 HOH HOH . H 6 HOH A 9 2209 105 HOH HOH . H 6 HOH A 10 2210 124 HOH HOH . H 6 HOH A 11 2211 20 HOH HOH . H 6 HOH A 12 2212 28 HOH HOH . H 6 HOH A 13 2213 50 HOH HOH . H 6 HOH A 14 2214 2 HOH HOH . H 6 HOH A 15 2215 87 HOH HOH . H 6 HOH A 16 2216 23 HOH HOH . H 6 HOH A 17 2217 145 HOH HOH . H 6 HOH A 18 2218 85 HOH HOH . H 6 HOH A 19 2219 74 HOH HOH . H 6 HOH A 20 2220 21 HOH HOH . H 6 HOH A 21 2221 33 HOH HOH . H 6 HOH A 22 2222 45 HOH HOH . H 6 HOH A 23 2223 129 HOH HOH . H 6 HOH A 24 2224 88 HOH HOH . H 6 HOH A 25 2225 12 HOH HOH . H 6 HOH A 26 2226 137 HOH HOH . H 6 HOH A 27 2227 140 HOH HOH . H 6 HOH A 28 2228 16 HOH HOH . H 6 HOH A 29 2229 8 HOH HOH . H 6 HOH A 30 2230 13 HOH HOH . H 6 HOH A 31 2231 65 HOH HOH . H 6 HOH A 32 2232 80 HOH HOH . H 6 HOH A 33 2233 108 HOH HOH . H 6 HOH A 34 2234 132 HOH HOH . H 6 HOH A 35 2235 81 HOH HOH . H 6 HOH A 36 2236 55 HOH HOH . H 6 HOH A 37 2237 89 HOH HOH . H 6 HOH A 38 2238 102 HOH HOH . H 6 HOH A 39 2239 10 HOH HOH . H 6 HOH A 40 2240 99 HOH HOH . H 6 HOH A 41 2241 41 HOH HOH . H 6 HOH A 42 2242 3 HOH HOH . H 6 HOH A 43 2243 84 HOH HOH . H 6 HOH A 44 2244 126 HOH HOH . H 6 HOH A 45 2245 86 HOH HOH . H 6 HOH A 46 2246 4 HOH HOH . H 6 HOH A 47 2247 66 HOH HOH . H 6 HOH A 48 2248 59 HOH HOH . H 6 HOH A 49 2249 106 HOH HOH . H 6 HOH A 50 2250 40 HOH HOH . H 6 HOH A 51 2251 127 HOH HOH . H 6 HOH A 52 2252 34 HOH HOH . H 6 HOH A 53 2253 7 HOH HOH . H 6 HOH A 54 2254 51 HOH HOH . H 6 HOH A 55 2255 95 HOH HOH . H 6 HOH A 56 2256 31 HOH HOH . H 6 HOH A 57 2257 5 HOH HOH . H 6 HOH A 58 2258 49 HOH HOH . H 6 HOH A 59 2259 123 HOH HOH . H 6 HOH A 60 2260 57 HOH HOH . H 6 HOH A 61 2261 113 HOH HOH . H 6 HOH A 62 2262 114 HOH HOH . H 6 HOH A 63 2263 115 HOH HOH . H 6 HOH A 64 2264 37 HOH HOH . H 6 HOH A 65 2265 67 HOH HOH . H 6 HOH A 66 2266 39 HOH HOH . H 6 HOH A 67 2267 94 HOH HOH . H 6 HOH A 68 2268 79 HOH HOH . H 6 HOH A 69 2269 100 HOH HOH . H 6 HOH A 70 2270 98 HOH HOH . H 6 HOH A 71 2271 96 HOH HOH . H 6 HOH A 72 2272 60 HOH HOH . H 6 HOH A 73 2273 72 HOH HOH . H 6 HOH A 74 2274 141 HOH HOH . H 6 HOH A 75 2275 131 HOH HOH . H 6 HOH A 76 2276 125 HOH HOH . H 6 HOH A 77 2277 110 HOH HOH . H 6 HOH A 78 2278 107 HOH HOH . H 6 HOH A 79 2279 117 HOH HOH . H 6 HOH A 80 2280 46 HOH HOH . I 6 HOH B 1 501 103 HOH HOH . I 6 HOH B 2 502 43 HOH HOH . I 6 HOH B 3 503 134 HOH HOH . I 6 HOH B 4 504 76 HOH HOH . I 6 HOH B 5 505 118 HOH HOH . I 6 HOH B 6 506 97 HOH HOH . I 6 HOH B 7 507 58 HOH HOH . I 6 HOH B 8 508 62 HOH HOH . I 6 HOH B 9 509 78 HOH HOH . I 6 HOH B 10 510 119 HOH HOH . I 6 HOH B 11 511 47 HOH HOH . I 6 HOH B 12 512 15 HOH HOH . I 6 HOH B 13 513 42 HOH HOH . I 6 HOH B 14 514 112 HOH HOH . I 6 HOH B 15 515 70 HOH HOH . I 6 HOH B 16 516 128 HOH HOH . I 6 HOH B 17 517 142 HOH HOH . I 6 HOH B 18 518 6 HOH HOH . I 6 HOH B 19 519 83 HOH HOH . I 6 HOH B 20 520 136 HOH HOH . I 6 HOH B 21 521 71 HOH HOH . I 6 HOH B 22 522 93 HOH HOH . I 6 HOH B 23 523 32 HOH HOH . I 6 HOH B 24 524 61 HOH HOH . I 6 HOH B 25 525 77 HOH HOH . I 6 HOH B 26 526 111 HOH HOH . I 6 HOH B 27 527 146 HOH HOH . I 6 HOH B 28 528 30 HOH HOH . I 6 HOH B 29 529 22 HOH HOH . I 6 HOH B 30 530 14 HOH HOH . I 6 HOH B 31 531 92 HOH HOH . I 6 HOH B 32 532 116 HOH HOH . I 6 HOH B 33 533 44 HOH HOH . I 6 HOH B 34 534 75 HOH HOH . I 6 HOH B 35 535 82 HOH HOH . I 6 HOH B 36 536 36 HOH HOH . I 6 HOH B 37 537 104 HOH HOH . I 6 HOH B 38 538 38 HOH HOH . I 6 HOH B 39 539 64 HOH HOH . I 6 HOH B 40 540 121 HOH HOH . I 6 HOH B 41 541 11 HOH HOH . I 6 HOH B 42 542 53 HOH HOH . I 6 HOH B 43 543 122 HOH HOH . I 6 HOH B 44 544 68 HOH HOH . I 6 HOH B 45 545 26 HOH HOH . I 6 HOH B 46 546 109 HOH HOH . I 6 HOH B 47 547 35 HOH HOH . I 6 HOH B 48 548 90 HOH HOH . I 6 HOH B 49 549 25 HOH HOH . I 6 HOH B 50 550 139 HOH HOH . I 6 HOH B 51 551 69 HOH HOH . I 6 HOH B 52 552 19 HOH HOH . I 6 HOH B 53 553 63 HOH HOH . I 6 HOH B 54 554 27 HOH HOH . I 6 HOH B 55 555 73 HOH HOH . I 6 HOH B 56 556 24 HOH HOH . I 6 HOH B 57 557 56 HOH HOH . I 6 HOH B 58 558 18 HOH HOH . I 6 HOH B 59 559 54 HOH HOH . I 6 HOH B 60 560 52 HOH HOH . I 6 HOH B 61 561 29 HOH HOH . I 6 HOH B 62 562 138 HOH HOH . I 6 HOH B 63 563 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 TJV . D . C 3 41.906 26.778 26.01 0.14 34.94 ? C4 TJV 2101 A 1 HETATM 2 C C4 TJV . E . C 3 41.89 26.781 25.98 0.1 38.07 ? C4 TJV 2101 A 1 HETATM 3 C C4 TJV . F . C 3 41.866 26.782 25.95 0.07 40.23 ? C4 TJV 2101 A 1 HETATM 4 C C5 TJV . D . C 3 41.819 25.886 24.945 0.14 35.77 ? C5 TJV 2101 A 1 HETATM 5 C C5 TJV . E . C 3 41.796 25.886 24.918 0.1 38.76 ? C5 TJV 2101 A 1 HETATM 6 C C5 TJV . F . C 3 41.764 25.887 24.889 0.07 40.77 ? C5 TJV 2101 A 1 HETATM 7 C C6 TJV . D . C 3 43.012 25.023 24.658 0.14 38.18 ? C6 TJV 2101 A 1 HETATM 8 C C6 TJV . E . C 3 42.971 25.008 24.614 0.1 40.66 ? C6 TJV 2101 A 1 HETATM 9 C C6 TJV . F . C 3 42.929 25.001 24.566 0.07 42.2 ? C6 TJV 2101 A 1 HETATM 10 C C7 TJV . D . C 3 39.328 29.042 27.218 0.14 32.34 ? C7 TJV 2101 A 1 HETATM 11 C C7 TJV . E . C 3 39.32 29.068 27.155 0.1 36.2 ? C7 TJV 2101 A 1 HETATM 12 C C7 TJV . F . C 3 39.306 29.082 27.116 0.07 38.9 ? C7 TJV 2101 A 1 HETATM 13 S S TJV . D . C 3 42.897 23.625 23.955 0.14 41.81 ? S TJV 2101 A 1 HETATM 14 S S TJV . E . C 3 42.809 23.686 23.789 0.1 43.69 ? S TJV 2101 A 1 HETATM 15 S S TJV . F . C 3 42.744 23.748 23.647 0.07 44.58 ? S TJV 2101 A 1 HETATM 16 N N TJV . D . C 3 44.211 25.463 25.024 0.14 39.03 ? N TJV 2101 A 1 HETATM 17 N N TJV . E . C 3 44.174 25.359 25.059 0.1 41.3 ? N TJV 2101 A 1 HETATM 18 N N TJV . F . C 3 44.128 25.286 25.066 0.07 42.66 ? N TJV 2101 A 1 HETATM 19 C C TJV . D . C 3 40.652 25.815 24.176 0.14 34.52 ? C TJV 2101 A 1 HETATM 20 C C TJV . E . C 3 40.627 25.812 24.153 0.1 37.8 ? C TJV 2101 A 1 HETATM 21 C C TJV . F . C 3 40.592 25.812 24.13 0.07 40.06 ? C TJV 2101 A 1 HETATM 22 C C3 TJV . D . C 3 40.819 27.595 26.285 0.14 34.26 ? C3 TJV 2101 A 1 HETATM 23 C C3 TJV . E . C 3 40.801 27.596 26.25 0.1 37.55 ? C3 TJV 2101 A 1 HETATM 24 C C3 TJV . F . C 3 40.777 27.594 26.224 0.07 39.84 ? C3 TJV 2101 A 1 HETATM 25 O O TJV . D . C 3 40.675 28.534 27.273 0.14 34.34 ? O TJV 2101 A 1 HETATM 26 O O TJV . E . C 3 40.658 28.541 27.23 0.1 37.58 ? O TJV 2101 A 1 HETATM 27 O O TJV . F . C 3 40.636 28.539 27.202 0.07 39.85 ? O TJV 2101 A 1 HETATM 28 O O1 TJV . D . C 3 38.772 28.419 26.04 0.14 33.45 ? O1 TJV 2101 A 1 HETATM 29 O O1 TJV . E . C 3 38.753 28.422 25.997 0.1 36.93 ? O1 TJV 2101 A 1 HETATM 30 O O1 TJV . F . C 3 38.727 28.419 25.976 0.07 39.4 ? O1 TJV 2101 A 1 HETATM 31 C C2 TJV . D . C 3 39.679 27.525 25.543 0.14 33.24 ? C2 TJV 2101 A 1 HETATM 32 C C2 TJV . E . C 3 39.661 27.525 25.51 0.1 36.85 ? C2 TJV 2101 A 1 HETATM 33 C C2 TJV . F . C 3 39.634 27.522 25.489 0.07 39.37 ? C2 TJV 2101 A 1 HETATM 34 C C1 TJV . D . C 3 39.559 26.64 24.474 0.14 34.04 ? C1 TJV 2101 A 1 HETATM 35 C C1 TJV . E . C 3 39.538 26.637 24.447 0.1 37.39 ? C1 TJV 2101 A 1 HETATM 36 C C1 TJV . F . C 3 39.505 26.636 24.428 0.07 39.72 ? C1 TJV 2101 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 36 #