data_5QY9
#
_model_server_result.job_id            L35UCT9SRCe62sGfRX3o0g 
_model_server_result.datetime_utc      '2024-11-22 05:51:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qy9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":2106}' 
#
_entry.id    5QY9 
#
_exptl.entry_id    5QY9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            R-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.72 
_cell.angle_gamma         90 
_cell.entry_id            5QY9 
_cell.length_a            88.887 
_cell.length_b            81.898 
_cell.length_c            93.959 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QY9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              R-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGR sing 237 n n 
C1 O1 PGR sing 238 n n 
C1 H11 PGR sing 239 n n 
C1 H12 PGR sing 240 n n 
C2 C3 PGR sing 241 n n 
C2 O2 PGR sing 242 n n 
C2 H2 PGR sing 243 n n 
C3 H31 PGR sing 244 n n 
C3 H32 PGR sing 245 n n 
C3 H33 PGR sing 246 n n 
O1 HO1 PGR sing 247 n n 
O2 HO2 PGR sing 248 n n 
#
_atom_sites.entry_id                     5QY9 
_atom_sites.fract_transf_matrix[1][1]    0.01125 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003812 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01221 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011237 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 R8Y A 1 2101 2101 R8Y XXX . 
D 4 SO4 A 1 2102 2201 SO4 SO4 . 
E 4 SO4 A 1 2103 2301 SO4 SO4 . 
F 5 PGR A 1 2104 2401 PGR PGR . 
G 5 PGR A 1 2105 2501 PGR PGR . 
H 5 PGR A 1 2106 2601 PGR PGR . 
I 4 SO4 A 1 2107 2701 SO4 SO4 . 
J 4 SO4 A 1 2108 2801 SO4 SO4 . 
K 6 HOH A 1 2201 209 HOH HOH . 
K 6 HOH A 2 2202 57 HOH HOH . 
K 6 HOH A 3 2203 208 HOH HOH . 
K 6 HOH A 4 2204 32 HOH HOH . 
K 6 HOH A 5 2205 100 HOH HOH . 
K 6 HOH A 6 2206 162 HOH HOH . 
K 6 HOH A 7 2207 132 HOH HOH . 
K 6 HOH A 8 2208 87 HOH HOH . 
K 6 HOH A 9 2209 108 HOH HOH . 
K 6 HOH A 10 2210 217 HOH HOH . 
K 6 HOH A 11 2211 115 HOH HOH . 
K 6 HOH A 12 2212 216 HOH HOH . 
K 6 HOH A 13 2213 88 HOH HOH . 
K 6 HOH A 14 2214 101 HOH HOH . 
K 6 HOH A 15 2215 63 HOH HOH . 
K 6 HOH A 16 2216 170 HOH HOH . 
K 6 HOH A 17 2217 177 HOH HOH . 
K 6 HOH A 18 2218 22 HOH HOH . 
K 6 HOH A 19 2219 39 HOH HOH . 
K 6 HOH A 20 2220 200 HOH HOH . 
K 6 HOH A 21 2221 134 HOH HOH . 
K 6 HOH A 22 2222 68 HOH HOH . 
K 6 HOH A 23 2223 210 HOH HOH . 
K 6 HOH A 24 2224 25 HOH HOH . 
K 6 HOH A 25 2225 178 HOH HOH . 
K 6 HOH A 26 2226 40 HOH HOH . 
K 6 HOH A 27 2227 36 HOH HOH . 
K 6 HOH A 28 2228 143 HOH HOH . 
K 6 HOH A 29 2229 5 HOH HOH . 
K 6 HOH A 30 2230 94 HOH HOH . 
K 6 HOH A 31 2231 158 HOH HOH . 
K 6 HOH A 32 2232 114 HOH HOH . 
K 6 HOH A 33 2233 187 HOH HOH . 
K 6 HOH A 34 2234 23 HOH HOH . 
K 6 HOH A 35 2235 124 HOH HOH . 
K 6 HOH A 36 2236 17 HOH HOH . 
K 6 HOH A 37 2237 133 HOH HOH . 
K 6 HOH A 38 2238 4 HOH HOH . 
K 6 HOH A 39 2239 82 HOH HOH . 
K 6 HOH A 40 2240 219 HOH HOH . 
K 6 HOH A 41 2241 118 HOH HOH . 
K 6 HOH A 42 2242 105 HOH HOH . 
K 6 HOH A 43 2243 38 HOH HOH . 
K 6 HOH A 44 2244 54 HOH HOH . 
K 6 HOH A 45 2245 203 HOH HOH . 
K 6 HOH A 46 2246 10 HOH HOH . 
K 6 HOH A 47 2247 171 HOH HOH . 
K 6 HOH A 48 2248 181 HOH HOH . 
K 6 HOH A 49 2249 86 HOH HOH . 
K 6 HOH A 50 2250 65 HOH HOH . 
K 6 HOH A 51 2251 24 HOH HOH . 
K 6 HOH A 52 2252 11 HOH HOH . 
K 6 HOH A 53 2253 125 HOH HOH . 
K 6 HOH A 54 2254 120 HOH HOH . 
K 6 HOH A 55 2255 131 HOH HOH . 
K 6 HOH A 56 2256 191 HOH HOH . 
K 6 HOH A 57 2257 67 HOH HOH . 
K 6 HOH A 58 2258 16 HOH HOH . 
K 6 HOH A 59 2259 109 HOH HOH . 
K 6 HOH A 60 2260 84 HOH HOH . 
K 6 HOH A 61 2261 18 HOH HOH . 
K 6 HOH A 62 2262 3 HOH HOH . 
K 6 HOH A 63 2263 148 HOH HOH . 
K 6 HOH A 64 2264 142 HOH HOH . 
K 6 HOH A 65 2265 12 HOH HOH . 
K 6 HOH A 66 2266 21 HOH HOH . 
K 6 HOH A 67 2267 90 HOH HOH . 
K 6 HOH A 68 2268 51 HOH HOH . 
K 6 HOH A 69 2269 58 HOH HOH . 
K 6 HOH A 70 2270 130 HOH HOH . 
K 6 HOH A 71 2271 61 HOH HOH . 
K 6 HOH A 72 2272 6 HOH HOH . 
K 6 HOH A 73 2273 77 HOH HOH . 
K 6 HOH A 74 2274 31 HOH HOH . 
K 6 HOH A 75 2275 8 HOH HOH . 
K 6 HOH A 76 2276 62 HOH HOH . 
K 6 HOH A 77 2277 89 HOH HOH . 
K 6 HOH A 78 2278 92 HOH HOH . 
K 6 HOH A 79 2279 147 HOH HOH . 
K 6 HOH A 80 2280 42 HOH HOH . 
K 6 HOH A 81 2281 185 HOH HOH . 
K 6 HOH A 82 2282 152 HOH HOH . 
K 6 HOH A 83 2283 146 HOH HOH . 
K 6 HOH A 84 2284 206 HOH HOH . 
K 6 HOH A 85 2285 179 HOH HOH . 
K 6 HOH A 86 2286 95 HOH HOH . 
K 6 HOH A 87 2287 135 HOH HOH . 
K 6 HOH A 88 2288 172 HOH HOH . 
K 6 HOH A 89 2289 28 HOH HOH . 
K 6 HOH A 90 2290 121 HOH HOH . 
K 6 HOH A 91 2291 76 HOH HOH . 
K 6 HOH A 92 2292 75 HOH HOH . 
K 6 HOH A 93 2293 7 HOH HOH . 
K 6 HOH A 94 2294 49 HOH HOH . 
K 6 HOH A 95 2295 163 HOH HOH . 
K 6 HOH A 96 2296 52 HOH HOH . 
K 6 HOH A 97 2297 150 HOH HOH . 
K 6 HOH A 98 2298 212 HOH HOH . 
K 6 HOH A 99 2299 59 HOH HOH . 
K 6 HOH A 100 2300 153 HOH HOH . 
K 6 HOH A 101 2301 218 HOH HOH . 
K 6 HOH A 102 2302 123 HOH HOH . 
K 6 HOH A 103 2303 164 HOH HOH . 
K 6 HOH A 104 2304 186 HOH HOH . 
K 6 HOH A 105 2305 215 HOH HOH . 
K 6 HOH A 106 2306 154 HOH HOH . 
K 6 HOH A 107 2307 91 HOH HOH . 
K 6 HOH A 108 2308 46 HOH HOH . 
K 6 HOH A 109 2309 213 HOH HOH . 
K 6 HOH A 110 2310 139 HOH HOH . 
K 6 HOH A 111 2311 127 HOH HOH . 
K 6 HOH A 112 2312 211 HOH HOH . 
K 6 HOH A 113 2313 34 HOH HOH . 
K 6 HOH A 114 2314 174 HOH HOH . 
L 6 HOH B 1 401 81 HOH HOH . 
L 6 HOH B 2 402 166 HOH HOH . 
L 6 HOH B 3 403 116 HOH HOH . 
L 6 HOH B 4 404 197 HOH HOH . 
L 6 HOH B 5 405 204 HOH HOH . 
L 6 HOH B 6 406 119 HOH HOH . 
L 6 HOH B 7 407 99 HOH HOH . 
L 6 HOH B 8 408 155 HOH HOH . 
L 6 HOH B 9 409 70 HOH HOH . 
L 6 HOH B 10 410 15 HOH HOH . 
L 6 HOH B 11 411 29 HOH HOH . 
L 6 HOH B 12 412 30 HOH HOH . 
L 6 HOH B 13 413 140 HOH HOH . 
L 6 HOH B 14 414 26 HOH HOH . 
L 6 HOH B 15 415 173 HOH HOH . 
L 6 HOH B 16 416 136 HOH HOH . 
L 6 HOH B 17 417 145 HOH HOH . 
L 6 HOH B 18 418 69 HOH HOH . 
L 6 HOH B 19 419 27 HOH HOH . 
L 6 HOH B 20 420 137 HOH HOH . 
L 6 HOH B 21 421 85 HOH HOH . 
L 6 HOH B 22 422 202 HOH HOH . 
L 6 HOH B 23 423 47 HOH HOH . 
L 6 HOH B 24 424 106 HOH HOH . 
L 6 HOH B 25 425 157 HOH HOH . 
L 6 HOH B 26 426 195 HOH HOH . 
L 6 HOH B 27 427 41 HOH HOH . 
L 6 HOH B 28 428 102 HOH HOH . 
L 6 HOH B 29 429 71 HOH HOH . 
L 6 HOH B 30 430 151 HOH HOH . 
L 6 HOH B 31 431 117 HOH HOH . 
L 6 HOH B 32 432 159 HOH HOH . 
L 6 HOH B 33 433 64 HOH HOH . 
L 6 HOH B 34 434 141 HOH HOH . 
L 6 HOH B 35 435 78 HOH HOH . 
L 6 HOH B 36 436 138 HOH HOH . 
L 6 HOH B 37 437 183 HOH HOH . 
L 6 HOH B 38 438 72 HOH HOH . 
L 6 HOH B 39 439 48 HOH HOH . 
L 6 HOH B 40 440 13 HOH HOH . 
L 6 HOH B 41 441 50 HOH HOH . 
L 6 HOH B 42 442 113 HOH HOH . 
L 6 HOH B 43 443 53 HOH HOH . 
L 6 HOH B 44 444 33 HOH HOH . 
L 6 HOH B 45 445 79 HOH HOH . 
L 6 HOH B 46 446 66 HOH HOH . 
L 6 HOH B 47 447 161 HOH HOH . 
L 6 HOH B 48 448 9 HOH HOH . 
L 6 HOH B 49 449 112 HOH HOH . 
L 6 HOH B 50 450 96 HOH HOH . 
L 6 HOH B 51 451 156 HOH HOH . 
L 6 HOH B 52 452 168 HOH HOH . 
L 6 HOH B 53 453 19 HOH HOH . 
L 6 HOH B 54 454 20 HOH HOH . 
L 6 HOH B 55 455 126 HOH HOH . 
L 6 HOH B 56 456 144 HOH HOH . 
L 6 HOH B 57 457 93 HOH HOH . 
L 6 HOH B 58 458 165 HOH HOH . 
L 6 HOH B 59 459 129 HOH HOH . 
L 6 HOH B 60 460 214 HOH HOH . 
L 6 HOH B 61 461 80 HOH HOH . 
L 6 HOH B 62 462 192 HOH HOH . 
L 6 HOH B 63 463 103 HOH HOH . 
L 6 HOH B 64 464 37 HOH HOH . 
L 6 HOH B 65 465 199 HOH HOH . 
L 6 HOH B 66 466 43 HOH HOH . 
L 6 HOH B 67 467 56 HOH HOH . 
L 6 HOH B 68 468 83 HOH HOH . 
L 6 HOH B 69 469 175 HOH HOH . 
L 6 HOH B 70 470 201 HOH HOH . 
L 6 HOH B 71 471 107 HOH HOH . 
L 6 HOH B 72 472 104 HOH HOH . 
L 6 HOH B 73 473 111 HOH HOH . 
L 6 HOH B 74 474 98 HOH HOH . 
L 6 HOH B 75 475 35 HOH HOH . 
L 6 HOH B 76 476 44 HOH HOH . 
L 6 HOH B 77 477 176 HOH HOH . 
L 6 HOH B 78 478 73 HOH HOH . 
L 6 HOH B 79 479 122 HOH HOH . 
L 6 HOH B 80 480 128 HOH HOH . 
L 6 HOH B 81 481 45 HOH HOH . 
L 6 HOH B 82 482 184 HOH HOH . 
L 6 HOH B 83 483 60 HOH HOH . 
L 6 HOH B 84 484 194 HOH HOH . 
L 6 HOH B 85 485 55 HOH HOH . 
L 6 HOH B 86 486 160 HOH HOH . 
L 6 HOH B 87 487 182 HOH HOH . 
L 6 HOH B 88 488 193 HOH HOH . 
L 6 HOH B 89 489 207 HOH HOH . 
L 6 HOH B 90 490 110 HOH HOH . 
L 6 HOH B 91 491 180 HOH HOH . 
L 6 HOH B 92 492 205 HOH HOH . 
L 6 HOH B 93 493 188 HOH HOH . 
L 6 HOH B 94 494 167 HOH HOH . 
L 6 HOH B 95 495 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGR . . . H 5 24.715 15.9 13.655 1 35.09 ? C1 PGR 2106 A 1 
HETATM 2 C C2 PGR . . . H 5 23.47 15.133 13.417 1 38.68 ? C2 PGR 2106 A 1 
HETATM 3 C C3 PGR . . . H 5 23.644 13.751 12.864 1 48.61 ? C3 PGR 2106 A 1 
HETATM 4 O O1 PGR . . . H 5 24.294 17.092 14.273 1 33.79 ? O1 PGR 2106 A 1 
HETATM 5 O O2 PGR . . . H 5 22.951 15.18 14.646 1 41.76 ? O2 PGR 2106 A 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           5 
#