data_5QYB # _model_server_result.job_id 9X_91xAf7vTfEBrb5qg2-A _model_server_result.datetime_utc '2024-11-22 06:16:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 5QYB # _exptl.entry_id 5QYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 205.253 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description (3-methoxyphenyl)(pyrrolidin-1-yl)methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.67 _cell.angle_gamma 90 _cell.entry_id 5QYB _cell.length_a 90.344 _cell.length_b 82.651 _cell.length_c 91.009 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 242 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 251 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 292 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.087 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H15 N O2' _chem_comp.formula_weight 205.253 _chem_comp.id R9G _chem_comp.mon_nstd_flag . _chem_comp.name (3-methoxyphenyl)(pyrrolidin-1-yl)methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 R9G doub 277 n y C2 C1 R9G sing 278 n y O C1 R9G sing 279 n n O C R9G sing 280 n n C3 C4 R9G sing 281 n y C1 C6 R9G doub 282 n y C4 C5 R9G doub 283 n y C6 C5 R9G sing 284 n y C5 C7 R9G sing 285 n n C11 C10 R9G sing 286 n n C11 N R9G sing 287 n n C10 C9 R9G sing 288 n n C7 N R9G sing 289 n n C7 O1 R9G doub 290 n n N C8 R9G sing 291 n n C9 C8 R9G sing 292 n n C4 H1 R9G sing 293 n n C6 H2 R9G sing 294 n n C8 H3 R9G sing 295 n n C8 H4 R9G sing 296 n n C9 H5 R9G sing 297 n n C9 H6 R9G sing 298 n n C10 H7 R9G sing 299 n n C10 H8 R9G sing 300 n n C11 H9 R9G sing 301 n n C11 H10 R9G sing 302 n n C3 H11 R9G sing 303 n n C2 H12 R9G sing 304 n n C H13 R9G sing 305 n n C H14 R9G sing 306 n n C H15 R9G sing 307 n n # _atom_sites.entry_id 5QYB _atom_sites.fract_transf_matrix[1][1] 0.011069 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003527 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 R9G A 1 2101 2101 R9G XXX . D 4 SO4 A 1 2102 2401 SO4 SO4 . E 4 SO4 A 1 2103 2501 SO4 SO4 . F 5 HOH A 1 2201 12 HOH HOH . F 5 HOH A 2 2202 26 HOH HOH . F 5 HOH A 3 2203 20 HOH HOH . F 5 HOH A 4 2204 4 HOH HOH . F 5 HOH A 5 2205 10 HOH HOH . F 5 HOH A 6 2206 13 HOH HOH . F 5 HOH A 7 2207 9 HOH HOH . F 5 HOH A 8 2208 18 HOH HOH . F 5 HOH A 9 2209 15 HOH HOH . F 5 HOH A 10 2210 17 HOH HOH . F 5 HOH A 11 2211 16 HOH HOH . F 5 HOH A 12 2212 14 HOH HOH . F 5 HOH A 13 2213 24 HOH HOH . F 5 HOH A 14 2214 11 HOH HOH . F 5 HOH A 15 2215 25 HOH HOH . F 5 HOH A 16 2216 19 HOH HOH . G 5 HOH B 1 401 3 HOH HOH . G 5 HOH B 2 402 6 HOH HOH . G 5 HOH B 3 403 21 HOH HOH . G 5 HOH B 4 404 22 HOH HOH . G 5 HOH B 5 405 8 HOH HOH . G 5 HOH B 6 406 5 HOH HOH . G 5 HOH B 7 407 23 HOH HOH . G 5 HOH B 8 408 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 R9G . D . C 3 30.602 17.985 41.424 0.32 56.66 ? C4 R9G 2101 A 1 HETATM 2 C C4 R9G . E . C 3 30.602 17.985 41.424 0.32 56.66 ? C4 R9G 2101 A 1 HETATM 3 C C4 R9G . F . C 3 30.602 17.985 41.424 0.32 56.66 ? C4 R9G 2101 A 1 HETATM 4 C C5 R9G . D . C 3 31.743 17.306 41.014 0.32 55.82 ? C5 R9G 2101 A 1 HETATM 5 C C5 R9G . E . C 3 31.743 17.306 41.014 0.32 55.82 ? C5 R9G 2101 A 1 HETATM 6 C C5 R9G . F . C 3 31.743 17.306 41.014 0.32 55.82 ? C5 R9G 2101 A 1 HETATM 7 C C6 R9G . D . C 3 31.694 16.496 39.886 0.32 57.7 ? C6 R9G 2101 A 1 HETATM 8 C C6 R9G . E . C 3 31.694 16.496 39.886 0.32 57.7 ? C6 R9G 2101 A 1 HETATM 9 C C6 R9G . F . C 3 31.694 16.496 39.886 0.32 57.7 ? C6 R9G 2101 A 1 HETATM 10 C C7 R9G . D . C 3 33.032 17.416 41.786 0.32 56.05 ? C7 R9G 2101 A 1 HETATM 11 C C7 R9G . E . C 3 33.032 17.416 41.786 0.32 56.05 ? C7 R9G 2101 A 1 HETATM 12 C C7 R9G . F . C 3 33.032 17.416 41.786 0.32 56.05 ? C7 R9G 2101 A 1 HETATM 13 C C8 R9G . D . C 3 34.883 16.225 42.875 0.32 55.49 ? C8 R9G 2101 A 1 HETATM 14 C C8 R9G . E . C 3 34.883 16.225 42.875 0.32 55.49 ? C8 R9G 2101 A 1 HETATM 15 C C8 R9G . F . C 3 34.883 16.225 42.875 0.32 55.49 ? C8 R9G 2101 A 1 HETATM 16 C C9 R9G . D . C 3 34.991 14.812 43.42 0.32 53.87 ? C9 R9G 2101 A 1 HETATM 17 C C9 R9G . E . C 3 34.991 14.812 43.42 0.32 53.87 ? C9 R9G 2101 A 1 HETATM 18 C C9 R9G . F . C 3 34.991 14.812 43.42 0.32 53.87 ? C9 R9G 2101 A 1 HETATM 19 C C10 R9G . D . C 3 33.634 14.156 43.297 0.32 52.52 ? C10 R9G 2101 A 1 HETATM 20 C C10 R9G . E . C 3 33.634 14.156 43.297 0.32 52.52 ? C10 R9G 2101 A 1 HETATM 21 C C10 R9G . F . C 3 33.634 14.156 43.297 0.32 52.52 ? C10 R9G 2101 A 1 HETATM 22 C C11 R9G . D . C 3 32.767 15.068 42.444 0.32 53.24 ? C11 R9G 2101 A 1 HETATM 23 C C11 R9G . E . C 3 32.767 15.068 42.444 0.32 53.24 ? C11 R9G 2101 A 1 HETATM 24 C C11 R9G . F . C 3 32.767 15.068 42.444 0.32 53.24 ? C11 R9G 2101 A 1 HETATM 25 O O1 R9G . D . C 3 33.601 18.492 41.867 0.32 51.69 ? O1 R9G 2101 A 1 HETATM 26 O O1 R9G . E . C 3 33.601 18.492 41.867 0.32 51.69 ? O1 R9G 2101 A 1 HETATM 27 O O1 R9G . F . C 3 33.601 18.492 41.867 0.32 51.69 ? O1 R9G 2101 A 1 HETATM 28 N N R9G . D . C 3 33.528 16.304 42.342 0.32 53.65 ? N R9G 2101 A 1 HETATM 29 N N R9G . E . C 3 33.528 16.304 42.342 0.32 53.65 ? N R9G 2101 A 1 HETATM 30 N N R9G . F . C 3 33.528 16.304 42.342 0.32 53.65 ? N R9G 2101 A 1 HETATM 31 C C3 R9G . D . C 3 29.421 17.861 40.693 0.32 57.95 ? C3 R9G 2101 A 1 HETATM 32 C C3 R9G . E . C 3 29.421 17.861 40.693 0.32 57.95 ? C3 R9G 2101 A 1 HETATM 33 C C3 R9G . F . C 3 29.421 17.861 40.693 0.32 57.95 ? C3 R9G 2101 A 1 HETATM 34 C C2 R9G . D . C 3 29.378 17.042 39.562 0.32 58.59 ? C2 R9G 2101 A 1 HETATM 35 C C2 R9G . E . C 3 29.378 17.042 39.562 0.32 58.59 ? C2 R9G 2101 A 1 HETATM 36 C C2 R9G . F . C 3 29.378 17.042 39.562 0.32 58.59 ? C2 R9G 2101 A 1 HETATM 37 C C1 R9G . D . C 3 30.516 16.358 39.157 0.32 56.3 ? C1 R9G 2101 A 1 HETATM 38 C C1 R9G . E . C 3 30.516 16.358 39.157 0.32 56.3 ? C1 R9G 2101 A 1 HETATM 39 C C1 R9G . F . C 3 30.516 16.358 39.157 0.32 56.3 ? C1 R9G 2101 A 1 HETATM 40 O O R9G . D . C 3 30.491 15.564 38.039 0.32 56.18 ? O R9G 2101 A 1 HETATM 41 O O R9G . E . C 3 30.491 15.564 38.039 0.32 56.18 ? O R9G 2101 A 1 HETATM 42 O O R9G . F . C 3 30.491 15.564 38.039 0.32 56.18 ? O R9G 2101 A 1 HETATM 43 C C R9G . D . C 3 29.264 15.356 37.336 0.32 56.8 ? C R9G 2101 A 1 HETATM 44 C C R9G . E . C 3 29.264 15.356 37.336 0.32 56.8 ? C R9G 2101 A 1 HETATM 45 C C R9G . F . C 3 29.264 15.356 37.336 0.32 56.8 ? C R9G 2101 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 45 #