data_5QYD # _model_server_result.job_id '_atWevuGDXqtryH8YRXiPA' _model_server_result.datetime_utc '2024-11-13 05:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2101}' # _entry.id 5QYD # _exptl.entry_id 5QYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 149.19 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-(2-methylphenyl)acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 5QYD _cell.length_a 88.219 _cell.length_b 82.141 _cell.length_c 94.089 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 N O' _chem_comp.formula_weight 149.19 _chem_comp.id R9S _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-methylphenyl)acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C8 R9S sing 289 n n O C8 R9S doub 290 n n C8 C7 R9S sing 291 n n C C1 R9S sing 292 n n C2 C1 R9S doub 293 n y C2 C3 R9S sing 294 n y C1 C6 R9S sing 295 n y C3 C4 R9S doub 296 n y C6 C7 R9S sing 297 n n C6 C5 R9S doub 298 n y C4 C5 R9S sing 299 n y C4 H1 R9S sing 300 n n C5 H2 R9S sing 301 n n C7 H3 R9S sing 302 n n C7 H4 R9S sing 303 n n N H5 R9S sing 304 n n N H6 R9S sing 305 n n C H7 R9S sing 306 n n C H8 R9S sing 307 n n C H9 R9S sing 308 n n C3 H10 R9S sing 309 n n C2 H11 R9S sing 310 n n # _atom_sites.entry_id 5QYD _atom_sites.fract_transf_matrix[1][1] 0.011335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 R9S A 1 2101 2101 R9S XXX . D 4 PGR A 1 2102 2301 PGR PGR . E 5 SO4 A 1 2103 2401 SO4 SO4 . F 5 SO4 A 1 2104 2501 SO4 SO4 . G 5 SO4 A 1 2105 2601 SO4 SO4 . H 6 HOH A 1 2201 122 HOH HOH . H 6 HOH A 2 2202 43 HOH HOH . H 6 HOH A 3 2203 60 HOH HOH . H 6 HOH A 4 2204 118 HOH HOH . H 6 HOH A 5 2205 84 HOH HOH . H 6 HOH A 6 2206 109 HOH HOH . H 6 HOH A 7 2207 90 HOH HOH . H 6 HOH A 8 2208 68 HOH HOH . H 6 HOH A 9 2209 13 HOH HOH . H 6 HOH A 10 2210 112 HOH HOH . H 6 HOH A 11 2211 76 HOH HOH . H 6 HOH A 12 2212 98 HOH HOH . H 6 HOH A 13 2213 25 HOH HOH . H 6 HOH A 14 2214 27 HOH HOH . H 6 HOH A 15 2215 6 HOH HOH . H 6 HOH A 16 2216 85 HOH HOH . H 6 HOH A 17 2217 15 HOH HOH . H 6 HOH A 18 2218 49 HOH HOH . H 6 HOH A 19 2219 3 HOH HOH . H 6 HOH A 20 2220 38 HOH HOH . H 6 HOH A 21 2221 55 HOH HOH . H 6 HOH A 22 2222 2 HOH HOH . H 6 HOH A 23 2223 75 HOH HOH . H 6 HOH A 24 2224 57 HOH HOH . H 6 HOH A 25 2225 54 HOH HOH . H 6 HOH A 26 2226 21 HOH HOH . H 6 HOH A 27 2227 88 HOH HOH . H 6 HOH A 28 2228 99 HOH HOH . H 6 HOH A 29 2229 117 HOH HOH . H 6 HOH A 30 2230 119 HOH HOH . H 6 HOH A 31 2231 5 HOH HOH . H 6 HOH A 32 2232 41 HOH HOH . H 6 HOH A 33 2233 10 HOH HOH . H 6 HOH A 34 2234 104 HOH HOH . H 6 HOH A 35 2235 8 HOH HOH . H 6 HOH A 36 2236 80 HOH HOH . H 6 HOH A 37 2237 92 HOH HOH . H 6 HOH A 38 2238 9 HOH HOH . H 6 HOH A 39 2239 14 HOH HOH . H 6 HOH A 40 2240 24 HOH HOH . H 6 HOH A 41 2241 81 HOH HOH . H 6 HOH A 42 2242 70 HOH HOH . H 6 HOH A 43 2243 64 HOH HOH . H 6 HOH A 44 2244 94 HOH HOH . H 6 HOH A 45 2245 63 HOH HOH . H 6 HOH A 46 2246 72 HOH HOH . H 6 HOH A 47 2247 12 HOH HOH . H 6 HOH A 48 2248 4 HOH HOH . H 6 HOH A 49 2249 34 HOH HOH . H 6 HOH A 50 2250 71 HOH HOH . H 6 HOH A 51 2251 86 HOH HOH . H 6 HOH A 52 2252 48 HOH HOH . H 6 HOH A 53 2253 35 HOH HOH . H 6 HOH A 54 2254 96 HOH HOH . H 6 HOH A 55 2255 61 HOH HOH . H 6 HOH A 56 2256 106 HOH HOH . H 6 HOH A 57 2257 65 HOH HOH . H 6 HOH A 58 2258 115 HOH HOH . H 6 HOH A 59 2259 120 HOH HOH . H 6 HOH A 60 2260 114 HOH HOH . H 6 HOH A 61 2261 107 HOH HOH . H 6 HOH A 62 2262 53 HOH HOH . H 6 HOH A 63 2263 105 HOH HOH . H 6 HOH A 64 2264 69 HOH HOH . I 6 HOH B 1 401 103 HOH HOH . I 6 HOH B 2 402 110 HOH HOH . I 6 HOH B 3 403 18 HOH HOH . I 6 HOH B 4 404 52 HOH HOH . I 6 HOH B 5 405 32 HOH HOH . I 6 HOH B 6 406 51 HOH HOH . I 6 HOH B 7 407 79 HOH HOH . I 6 HOH B 8 408 89 HOH HOH . I 6 HOH B 9 409 111 HOH HOH . I 6 HOH B 10 410 26 HOH HOH . I 6 HOH B 11 411 83 HOH HOH . I 6 HOH B 12 412 16 HOH HOH . I 6 HOH B 13 413 23 HOH HOH . I 6 HOH B 14 414 113 HOH HOH . I 6 HOH B 15 415 116 HOH HOH . I 6 HOH B 16 416 56 HOH HOH . I 6 HOH B 17 417 36 HOH HOH . I 6 HOH B 18 418 58 HOH HOH . I 6 HOH B 19 419 44 HOH HOH . I 6 HOH B 20 420 22 HOH HOH . I 6 HOH B 21 421 87 HOH HOH . I 6 HOH B 22 422 28 HOH HOH . I 6 HOH B 23 423 45 HOH HOH . I 6 HOH B 24 424 78 HOH HOH . I 6 HOH B 25 425 95 HOH HOH . I 6 HOH B 26 426 67 HOH HOH . I 6 HOH B 27 427 100 HOH HOH . I 6 HOH B 28 428 29 HOH HOH . I 6 HOH B 29 429 20 HOH HOH . I 6 HOH B 30 430 62 HOH HOH . I 6 HOH B 31 431 93 HOH HOH . I 6 HOH B 32 432 102 HOH HOH . I 6 HOH B 33 433 74 HOH HOH . I 6 HOH B 34 434 11 HOH HOH . I 6 HOH B 35 435 108 HOH HOH . I 6 HOH B 36 436 40 HOH HOH . I 6 HOH B 37 437 66 HOH HOH . I 6 HOH B 38 438 37 HOH HOH . I 6 HOH B 39 439 101 HOH HOH . I 6 HOH B 40 440 42 HOH HOH . I 6 HOH B 41 441 17 HOH HOH . I 6 HOH B 42 442 50 HOH HOH . I 6 HOH B 43 443 82 HOH HOH . I 6 HOH B 44 444 33 HOH HOH . I 6 HOH B 45 445 73 HOH HOH . I 6 HOH B 46 446 30 HOH HOH . I 6 HOH B 47 447 91 HOH HOH . I 6 HOH B 48 448 77 HOH HOH . I 6 HOH B 49 449 39 HOH HOH . I 6 HOH B 50 450 46 HOH HOH . I 6 HOH B 51 451 19 HOH HOH . I 6 HOH B 52 452 47 HOH HOH . I 6 HOH B 53 453 7 HOH HOH . I 6 HOH B 54 454 59 HOH HOH . I 6 HOH B 55 455 121 HOH HOH . I 6 HOH B 56 456 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 R9S . D . C 3 27.7 17.32 40.296 0.12 29.1 ? C4 R9S 2101 A 1 HETATM 2 C C4 R9S . E . C 3 27.701 17.321 40.297 0.12 29.09 ? C4 R9S 2101 A 1 HETATM 3 C C4 R9S . F . C 3 27.701 17.32 40.299 0.12 29.08 ? C4 R9S 2101 A 1 HETATM 4 C C5 R9S . D . C 3 26.711 16.429 39.892 0.12 29.3 ? C5 R9S 2101 A 1 HETATM 5 C C5 R9S . E . C 3 26.712 16.428 39.895 0.12 29.29 ? C5 R9S 2101 A 1 HETATM 6 C C5 R9S . F . C 3 26.713 16.427 39.897 0.12 29.28 ? C5 R9S 2101 A 1 HETATM 7 C C6 R9S . D . C 3 26.901 15.588 38.798 0.12 28.45 ? C6 R9S 2101 A 1 HETATM 8 C C6 R9S . E . C 3 26.902 15.586 38.801 0.12 28.44 ? C6 R9S 2101 A 1 HETATM 9 C C6 R9S . F . C 3 26.902 15.586 38.802 0.12 28.43 ? C6 R9S 2101 A 1 HETATM 10 C C7 R9S . D . C 3 25.821 14.6 38.37 0.12 27.77 ? C7 R9S 2101 A 1 HETATM 11 C C7 R9S . E . C 3 25.824 14.596 38.376 0.12 27.76 ? C7 R9S 2101 A 1 HETATM 12 C C7 R9S . F . C 3 25.824 14.596 38.377 0.12 27.76 ? C7 R9S 2101 A 1 HETATM 13 C C8 R9S . D . C 3 24.878 15.097 37.293 0.12 27.99 ? C8 R9S 2101 A 1 HETATM 14 C C8 R9S . E . C 3 24.878 15.089 37.3 0.12 27.97 ? C8 R9S 2101 A 1 HETATM 15 C C8 R9S . F . C 3 24.878 15.089 37.301 0.12 27.97 ? C8 R9S 2101 A 1 HETATM 16 O O R9S . D . C 3 23.943 14.384 36.93 0.12 27.29 ? O R9S 2101 A 1 HETATM 17 O O R9S . E . C 3 23.944 14.375 36.941 0.12 27.27 ? O R9S 2101 A 1 HETATM 18 O O R9S . F . C 3 23.944 14.375 36.941 0.12 27.27 ? O R9S 2101 A 1 HETATM 19 N N R9S . D . C 3 25.101 16.304 36.775 0.12 26.69 ? N R9S 2101 A 1 HETATM 20 N N R9S . E . C 3 25.1 16.295 36.778 0.12 26.68 ? N R9S 2101 A 1 HETATM 21 N N R9S . F . C 3 25.1 16.295 36.779 0.12 26.67 ? N R9S 2101 A 1 HETATM 22 C C1 R9S . D . C 3 28.109 15.631 38.125 0.12 28.47 ? C1 R9S 2101 A 1 HETATM 23 C C1 R9S . E . C 3 28.109 15.632 38.126 0.12 28.46 ? C1 R9S 2101 A 1 HETATM 24 C C1 R9S . F . C 3 28.109 15.632 38.127 0.12 28.45 ? C1 R9S 2101 A 1 HETATM 25 C C R9S . D . C 3 28.345 14.724 36.946 0.12 27.63 ? C R9S 2101 A 1 HETATM 26 C C R9S . E . C 3 28.345 14.725 36.947 0.12 27.61 ? C R9S 2101 A 1 HETATM 27 C C R9S . F . C 3 28.345 14.725 36.948 0.12 27.61 ? C R9S 2101 A 1 HETATM 28 C C3 R9S . D . C 3 28.905 17.368 39.61 0.12 29.3 ? C3 R9S 2101 A 1 HETATM 29 C C3 R9S . E . C 3 28.904 17.371 39.608 0.12 29.28 ? C3 R9S 2101 A 1 HETATM 30 C C3 R9S . F . C 3 28.905 17.37 39.61 0.12 29.27 ? C3 R9S 2101 A 1 HETATM 31 C C2 R9S . D . C 3 29.106 16.522 38.526 0.12 29.79 ? C2 R9S 2101 A 1 HETATM 32 C C2 R9S . E . C 3 29.104 16.525 38.524 0.12 29.78 ? C2 R9S 2101 A 1 HETATM 33 C C2 R9S . F . C 3 29.104 16.525 38.525 0.12 29.77 ? C2 R9S 2101 A 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 33 #