data_5QYD # _model_server_result.job_id DpnUtxA7bX30lmfiGZgTsw _model_server_result.datetime_utc '2024-11-13 05:43:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2102}' # _entry.id 5QYD # _exptl.entry_id 5QYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description R-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.47 _cell.angle_gamma 90 _cell.entry_id 5QYD _cell.length_a 88.219 _cell.length_b 82.141 _cell.length_c 94.089 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGR _chem_comp.mon_nstd_flag . _chem_comp.name R-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGR sing 237 n n C1 O1 PGR sing 238 n n C1 H11 PGR sing 239 n n C1 H12 PGR sing 240 n n C2 C3 PGR sing 241 n n C2 O2 PGR sing 242 n n C2 H2 PGR sing 243 n n C3 H31 PGR sing 244 n n C3 H32 PGR sing 245 n n C3 H33 PGR sing 246 n n O1 HO1 PGR sing 247 n n O2 HO2 PGR sing 248 n n # _atom_sites.entry_id 5QYD _atom_sites.fract_transf_matrix[1][1] 0.011335 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003786 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 R9S A 1 2101 2101 R9S XXX . D 4 PGR A 1 2102 2301 PGR PGR . E 5 SO4 A 1 2103 2401 SO4 SO4 . F 5 SO4 A 1 2104 2501 SO4 SO4 . G 5 SO4 A 1 2105 2601 SO4 SO4 . H 6 HOH A 1 2201 122 HOH HOH . H 6 HOH A 2 2202 43 HOH HOH . H 6 HOH A 3 2203 60 HOH HOH . H 6 HOH A 4 2204 118 HOH HOH . H 6 HOH A 5 2205 84 HOH HOH . H 6 HOH A 6 2206 109 HOH HOH . H 6 HOH A 7 2207 90 HOH HOH . H 6 HOH A 8 2208 68 HOH HOH . H 6 HOH A 9 2209 13 HOH HOH . H 6 HOH A 10 2210 112 HOH HOH . H 6 HOH A 11 2211 76 HOH HOH . H 6 HOH A 12 2212 98 HOH HOH . H 6 HOH A 13 2213 25 HOH HOH . H 6 HOH A 14 2214 27 HOH HOH . H 6 HOH A 15 2215 6 HOH HOH . H 6 HOH A 16 2216 85 HOH HOH . H 6 HOH A 17 2217 15 HOH HOH . H 6 HOH A 18 2218 49 HOH HOH . H 6 HOH A 19 2219 3 HOH HOH . H 6 HOH A 20 2220 38 HOH HOH . H 6 HOH A 21 2221 55 HOH HOH . H 6 HOH A 22 2222 2 HOH HOH . H 6 HOH A 23 2223 75 HOH HOH . H 6 HOH A 24 2224 57 HOH HOH . H 6 HOH A 25 2225 54 HOH HOH . H 6 HOH A 26 2226 21 HOH HOH . H 6 HOH A 27 2227 88 HOH HOH . H 6 HOH A 28 2228 99 HOH HOH . H 6 HOH A 29 2229 117 HOH HOH . H 6 HOH A 30 2230 119 HOH HOH . H 6 HOH A 31 2231 5 HOH HOH . H 6 HOH A 32 2232 41 HOH HOH . H 6 HOH A 33 2233 10 HOH HOH . H 6 HOH A 34 2234 104 HOH HOH . H 6 HOH A 35 2235 8 HOH HOH . H 6 HOH A 36 2236 80 HOH HOH . H 6 HOH A 37 2237 92 HOH HOH . H 6 HOH A 38 2238 9 HOH HOH . H 6 HOH A 39 2239 14 HOH HOH . H 6 HOH A 40 2240 24 HOH HOH . H 6 HOH A 41 2241 81 HOH HOH . H 6 HOH A 42 2242 70 HOH HOH . H 6 HOH A 43 2243 64 HOH HOH . H 6 HOH A 44 2244 94 HOH HOH . H 6 HOH A 45 2245 63 HOH HOH . H 6 HOH A 46 2246 72 HOH HOH . H 6 HOH A 47 2247 12 HOH HOH . H 6 HOH A 48 2248 4 HOH HOH . H 6 HOH A 49 2249 34 HOH HOH . H 6 HOH A 50 2250 71 HOH HOH . H 6 HOH A 51 2251 86 HOH HOH . H 6 HOH A 52 2252 48 HOH HOH . H 6 HOH A 53 2253 35 HOH HOH . H 6 HOH A 54 2254 96 HOH HOH . H 6 HOH A 55 2255 61 HOH HOH . H 6 HOH A 56 2256 106 HOH HOH . H 6 HOH A 57 2257 65 HOH HOH . H 6 HOH A 58 2258 115 HOH HOH . H 6 HOH A 59 2259 120 HOH HOH . H 6 HOH A 60 2260 114 HOH HOH . H 6 HOH A 61 2261 107 HOH HOH . H 6 HOH A 62 2262 53 HOH HOH . H 6 HOH A 63 2263 105 HOH HOH . H 6 HOH A 64 2264 69 HOH HOH . I 6 HOH B 1 401 103 HOH HOH . I 6 HOH B 2 402 110 HOH HOH . I 6 HOH B 3 403 18 HOH HOH . I 6 HOH B 4 404 52 HOH HOH . I 6 HOH B 5 405 32 HOH HOH . I 6 HOH B 6 406 51 HOH HOH . I 6 HOH B 7 407 79 HOH HOH . I 6 HOH B 8 408 89 HOH HOH . I 6 HOH B 9 409 111 HOH HOH . I 6 HOH B 10 410 26 HOH HOH . I 6 HOH B 11 411 83 HOH HOH . I 6 HOH B 12 412 16 HOH HOH . I 6 HOH B 13 413 23 HOH HOH . I 6 HOH B 14 414 113 HOH HOH . I 6 HOH B 15 415 116 HOH HOH . I 6 HOH B 16 416 56 HOH HOH . I 6 HOH B 17 417 36 HOH HOH . I 6 HOH B 18 418 58 HOH HOH . I 6 HOH B 19 419 44 HOH HOH . I 6 HOH B 20 420 22 HOH HOH . I 6 HOH B 21 421 87 HOH HOH . I 6 HOH B 22 422 28 HOH HOH . I 6 HOH B 23 423 45 HOH HOH . I 6 HOH B 24 424 78 HOH HOH . I 6 HOH B 25 425 95 HOH HOH . I 6 HOH B 26 426 67 HOH HOH . I 6 HOH B 27 427 100 HOH HOH . I 6 HOH B 28 428 29 HOH HOH . I 6 HOH B 29 429 20 HOH HOH . I 6 HOH B 30 430 62 HOH HOH . I 6 HOH B 31 431 93 HOH HOH . I 6 HOH B 32 432 102 HOH HOH . I 6 HOH B 33 433 74 HOH HOH . I 6 HOH B 34 434 11 HOH HOH . I 6 HOH B 35 435 108 HOH HOH . I 6 HOH B 36 436 40 HOH HOH . I 6 HOH B 37 437 66 HOH HOH . I 6 HOH B 38 438 37 HOH HOH . I 6 HOH B 39 439 101 HOH HOH . I 6 HOH B 40 440 42 HOH HOH . I 6 HOH B 41 441 17 HOH HOH . I 6 HOH B 42 442 50 HOH HOH . I 6 HOH B 43 443 82 HOH HOH . I 6 HOH B 44 444 33 HOH HOH . I 6 HOH B 45 445 73 HOH HOH . I 6 HOH B 46 446 30 HOH HOH . I 6 HOH B 47 447 91 HOH HOH . I 6 HOH B 48 448 77 HOH HOH . I 6 HOH B 49 449 39 HOH HOH . I 6 HOH B 50 450 46 HOH HOH . I 6 HOH B 51 451 19 HOH HOH . I 6 HOH B 52 452 47 HOH HOH . I 6 HOH B 53 453 7 HOH HOH . I 6 HOH B 54 454 59 HOH HOH . I 6 HOH B 55 455 121 HOH HOH . I 6 HOH B 56 456 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGR . . . D 4 47.132 15.899 41.136 1 51.2 ? C1 PGR 2102 A 1 HETATM 2 C C2 PGR . . . D 4 46.822 15.193 39.841 1 50.99 ? C2 PGR 2102 A 1 HETATM 3 C C3 PGR . . . D 4 48.029 15.061 38.979 1 50.57 ? C3 PGR 2102 A 1 HETATM 4 O O1 PGR . . . D 4 46.049 16.748 41.485 1 47.65 ? O1 PGR 2102 A 1 HETATM 5 O O2 PGR . . . D 4 46.263 13.922 40.147 1 50.11 ? O2 PGR 2102 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #