data_5QYD
#
_model_server_result.job_id            1Igdl741EF-6uaJLB_JMyQ 
_model_server_result.datetime_utc      '2024-11-27 08:16:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2105}' 
#
_entry.id    5QYD 
#
_exptl.entry_id    5QYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.47 
_cell.angle_gamma         90 
_cell.entry_id            5QYD 
_cell.length_a            88.219 
_cell.length_b            82.141 
_cell.length_c            94.089 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 324 n n 
S O2 SO4 doub 325 n n 
S O3 SO4 sing 326 n n 
S O4 SO4 sing 327 n n 
#
_atom_sites.entry_id                     5QYD 
_atom_sites.fract_transf_matrix[1][1]    0.011335 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003786 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012174 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 R9S A 1 2101 2101 R9S XXX . 
D 4 PGR A 1 2102 2301 PGR PGR . 
E 5 SO4 A 1 2103 2401 SO4 SO4 . 
F 5 SO4 A 1 2104 2501 SO4 SO4 . 
G 5 SO4 A 1 2105 2601 SO4 SO4 . 
H 6 HOH A 1 2201 122 HOH HOH . 
H 6 HOH A 2 2202 43 HOH HOH . 
H 6 HOH A 3 2203 60 HOH HOH . 
H 6 HOH A 4 2204 118 HOH HOH . 
H 6 HOH A 5 2205 84 HOH HOH . 
H 6 HOH A 6 2206 109 HOH HOH . 
H 6 HOH A 7 2207 90 HOH HOH . 
H 6 HOH A 8 2208 68 HOH HOH . 
H 6 HOH A 9 2209 13 HOH HOH . 
H 6 HOH A 10 2210 112 HOH HOH . 
H 6 HOH A 11 2211 76 HOH HOH . 
H 6 HOH A 12 2212 98 HOH HOH . 
H 6 HOH A 13 2213 25 HOH HOH . 
H 6 HOH A 14 2214 27 HOH HOH . 
H 6 HOH A 15 2215 6 HOH HOH . 
H 6 HOH A 16 2216 85 HOH HOH . 
H 6 HOH A 17 2217 15 HOH HOH . 
H 6 HOH A 18 2218 49 HOH HOH . 
H 6 HOH A 19 2219 3 HOH HOH . 
H 6 HOH A 20 2220 38 HOH HOH . 
H 6 HOH A 21 2221 55 HOH HOH . 
H 6 HOH A 22 2222 2 HOH HOH . 
H 6 HOH A 23 2223 75 HOH HOH . 
H 6 HOH A 24 2224 57 HOH HOH . 
H 6 HOH A 25 2225 54 HOH HOH . 
H 6 HOH A 26 2226 21 HOH HOH . 
H 6 HOH A 27 2227 88 HOH HOH . 
H 6 HOH A 28 2228 99 HOH HOH . 
H 6 HOH A 29 2229 117 HOH HOH . 
H 6 HOH A 30 2230 119 HOH HOH . 
H 6 HOH A 31 2231 5 HOH HOH . 
H 6 HOH A 32 2232 41 HOH HOH . 
H 6 HOH A 33 2233 10 HOH HOH . 
H 6 HOH A 34 2234 104 HOH HOH . 
H 6 HOH A 35 2235 8 HOH HOH . 
H 6 HOH A 36 2236 80 HOH HOH . 
H 6 HOH A 37 2237 92 HOH HOH . 
H 6 HOH A 38 2238 9 HOH HOH . 
H 6 HOH A 39 2239 14 HOH HOH . 
H 6 HOH A 40 2240 24 HOH HOH . 
H 6 HOH A 41 2241 81 HOH HOH . 
H 6 HOH A 42 2242 70 HOH HOH . 
H 6 HOH A 43 2243 64 HOH HOH . 
H 6 HOH A 44 2244 94 HOH HOH . 
H 6 HOH A 45 2245 63 HOH HOH . 
H 6 HOH A 46 2246 72 HOH HOH . 
H 6 HOH A 47 2247 12 HOH HOH . 
H 6 HOH A 48 2248 4 HOH HOH . 
H 6 HOH A 49 2249 34 HOH HOH . 
H 6 HOH A 50 2250 71 HOH HOH . 
H 6 HOH A 51 2251 86 HOH HOH . 
H 6 HOH A 52 2252 48 HOH HOH . 
H 6 HOH A 53 2253 35 HOH HOH . 
H 6 HOH A 54 2254 96 HOH HOH . 
H 6 HOH A 55 2255 61 HOH HOH . 
H 6 HOH A 56 2256 106 HOH HOH . 
H 6 HOH A 57 2257 65 HOH HOH . 
H 6 HOH A 58 2258 115 HOH HOH . 
H 6 HOH A 59 2259 120 HOH HOH . 
H 6 HOH A 60 2260 114 HOH HOH . 
H 6 HOH A 61 2261 107 HOH HOH . 
H 6 HOH A 62 2262 53 HOH HOH . 
H 6 HOH A 63 2263 105 HOH HOH . 
H 6 HOH A 64 2264 69 HOH HOH . 
I 6 HOH B 1 401 103 HOH HOH . 
I 6 HOH B 2 402 110 HOH HOH . 
I 6 HOH B 3 403 18 HOH HOH . 
I 6 HOH B 4 404 52 HOH HOH . 
I 6 HOH B 5 405 32 HOH HOH . 
I 6 HOH B 6 406 51 HOH HOH . 
I 6 HOH B 7 407 79 HOH HOH . 
I 6 HOH B 8 408 89 HOH HOH . 
I 6 HOH B 9 409 111 HOH HOH . 
I 6 HOH B 10 410 26 HOH HOH . 
I 6 HOH B 11 411 83 HOH HOH . 
I 6 HOH B 12 412 16 HOH HOH . 
I 6 HOH B 13 413 23 HOH HOH . 
I 6 HOH B 14 414 113 HOH HOH . 
I 6 HOH B 15 415 116 HOH HOH . 
I 6 HOH B 16 416 56 HOH HOH . 
I 6 HOH B 17 417 36 HOH HOH . 
I 6 HOH B 18 418 58 HOH HOH . 
I 6 HOH B 19 419 44 HOH HOH . 
I 6 HOH B 20 420 22 HOH HOH . 
I 6 HOH B 21 421 87 HOH HOH . 
I 6 HOH B 22 422 28 HOH HOH . 
I 6 HOH B 23 423 45 HOH HOH . 
I 6 HOH B 24 424 78 HOH HOH . 
I 6 HOH B 25 425 95 HOH HOH . 
I 6 HOH B 26 426 67 HOH HOH . 
I 6 HOH B 27 427 100 HOH HOH . 
I 6 HOH B 28 428 29 HOH HOH . 
I 6 HOH B 29 429 20 HOH HOH . 
I 6 HOH B 30 430 62 HOH HOH . 
I 6 HOH B 31 431 93 HOH HOH . 
I 6 HOH B 32 432 102 HOH HOH . 
I 6 HOH B 33 433 74 HOH HOH . 
I 6 HOH B 34 434 11 HOH HOH . 
I 6 HOH B 35 435 108 HOH HOH . 
I 6 HOH B 36 436 40 HOH HOH . 
I 6 HOH B 37 437 66 HOH HOH . 
I 6 HOH B 38 438 37 HOH HOH . 
I 6 HOH B 39 439 101 HOH HOH . 
I 6 HOH B 40 440 42 HOH HOH . 
I 6 HOH B 41 441 17 HOH HOH . 
I 6 HOH B 42 442 50 HOH HOH . 
I 6 HOH B 43 443 82 HOH HOH . 
I 6 HOH B 44 444 33 HOH HOH . 
I 6 HOH B 45 445 73 HOH HOH . 
I 6 HOH B 46 446 30 HOH HOH . 
I 6 HOH B 47 447 91 HOH HOH . 
I 6 HOH B 48 448 77 HOH HOH . 
I 6 HOH B 49 449 39 HOH HOH . 
I 6 HOH B 50 450 46 HOH HOH . 
I 6 HOH B 51 451 19 HOH HOH . 
I 6 HOH B 52 452 47 HOH HOH . 
I 6 HOH B 53 453 7 HOH HOH . 
I 6 HOH B 54 454 59 HOH HOH . 
I 6 HOH B 55 455 121 HOH HOH . 
I 6 HOH B 56 456 97 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . G 5 58.384 -6.972 25.281 1 81.03 ? S SO4 2105 A 1 
HETATM 2 O O1 SO4 . . . G 5 59.664 -7.525 24.893 1 78.35 ? O1 SO4 2105 A 1 
HETATM 3 O O2 SO4 . . . G 5 57.819 -6.248 24.161 1 64.85 ? O2 SO4 2105 A 1 
HETATM 4 O O3 SO4 . . . G 5 58.566 -6.052 26.377 1 89.86 ? O3 SO4 2105 A 1 
HETATM 5 O O4 SO4 . . . G 5 57.504 -8.045 25.702 1 70.72 ? O4 SO4 2105 A 1 
#
_model_server_stats.io_time_ms              54 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           398 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           5 
#