data_5QYF
#
_model_server_result.job_id            Y-xMp8kCvLobGfC8Upa-GA 
_model_server_result.datetime_utc      '2024-11-01 01:32:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5qyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":2103}' 
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_entry.id    5QYF 
#
_exptl.entry_id    5QYF 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              76.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            R-1,2-PROPANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.48 
_cell.angle_gamma         90 
_cell.entry_id            5QYF 
_cell.length_a            88.215 
_cell.length_b            81.984 
_cell.length_c            93.727 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5QYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 H N N 
#
_chem_comp.formula           'C3 H8 O2' 
_chem_comp.formula_weight    76.094 
_chem_comp.id                PGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              R-1,2-PROPANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PGR sing 237 n n 
C1 O1 PGR sing 238 n n 
C1 H11 PGR sing 239 n n 
C1 H12 PGR sing 240 n n 
C2 C3 PGR sing 241 n n 
C2 O2 PGR sing 242 n n 
C2 H2 PGR sing 243 n n 
C3 H31 PGR sing 244 n n 
C3 H32 PGR sing 245 n n 
C3 H33 PGR sing 246 n n 
O1 HO1 PGR sing 247 n n 
O2 HO2 PGR sing 248 n n 
#
_atom_sites.entry_id                     5QYF 
_atom_sites.fract_transf_matrix[1][1]    0.011336 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003789 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012198 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011249 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 2101 2101 SO4 SO4 . 
D 3 SO4 A 1 2102 2201 SO4 SO4 . 
E 4 PGR A 1 2103 2301 PGR PGR . 
F 4 PGR A 1 2104 2401 PGR PGR . 
G 3 SO4 A 1 2105 2501 SO4 SO4 . 
H 4 PGR A 1 2106 2601 PGR PGR . 
I 3 SO4 A 1 2107 2701 SO4 SO4 . 
J 5 T9Y B 1 401 401 T9Y XXX . 
K 6 HOH A 1 2201 40 HOH HOH . 
K 6 HOH A 2 2202 119 HOH HOH . 
K 6 HOH A 3 2203 45 HOH HOH . 
K 6 HOH A 4 2204 120 HOH HOH . 
K 6 HOH A 5 2205 76 HOH HOH . 
K 6 HOH A 6 2206 121 HOH HOH . 
K 6 HOH A 7 2207 3 HOH HOH . 
K 6 HOH A 8 2208 110 HOH HOH . 
K 6 HOH A 9 2209 85 HOH HOH . 
K 6 HOH A 10 2210 83 HOH HOH . 
K 6 HOH A 11 2211 15 HOH HOH . 
K 6 HOH A 12 2212 115 HOH HOH . 
K 6 HOH A 13 2213 12 HOH HOH . 
K 6 HOH A 14 2214 25 HOH HOH . 
K 6 HOH A 15 2215 123 HOH HOH . 
K 6 HOH A 16 2216 77 HOH HOH . 
K 6 HOH A 17 2217 67 HOH HOH . 
K 6 HOH A 18 2218 24 HOH HOH . 
K 6 HOH A 19 2219 43 HOH HOH . 
K 6 HOH A 20 2220 8 HOH HOH . 
K 6 HOH A 21 2221 58 HOH HOH . 
K 6 HOH A 22 2222 22 HOH HOH . 
K 6 HOH A 23 2223 7 HOH HOH . 
K 6 HOH A 24 2224 18 HOH HOH . 
K 6 HOH A 25 2225 91 HOH HOH . 
K 6 HOH A 26 2226 47 HOH HOH . 
K 6 HOH A 27 2227 42 HOH HOH . 
K 6 HOH A 28 2228 107 HOH HOH . 
K 6 HOH A 29 2229 104 HOH HOH . 
K 6 HOH A 30 2230 9 HOH HOH . 
K 6 HOH A 31 2231 124 HOH HOH . 
K 6 HOH A 32 2232 86 HOH HOH . 
K 6 HOH A 33 2233 72 HOH HOH . 
K 6 HOH A 34 2234 48 HOH HOH . 
K 6 HOH A 35 2235 10 HOH HOH . 
K 6 HOH A 36 2236 66 HOH HOH . 
K 6 HOH A 37 2237 14 HOH HOH . 
K 6 HOH A 38 2238 75 HOH HOH . 
K 6 HOH A 39 2239 88 HOH HOH . 
K 6 HOH A 40 2240 80 HOH HOH . 
K 6 HOH A 41 2241 81 HOH HOH . 
K 6 HOH A 42 2242 65 HOH HOH . 
K 6 HOH A 43 2243 6 HOH HOH . 
K 6 HOH A 44 2244 92 HOH HOH . 
K 6 HOH A 45 2245 78 HOH HOH . 
K 6 HOH A 46 2246 97 HOH HOH . 
K 6 HOH A 47 2247 32 HOH HOH . 
K 6 HOH A 48 2248 4 HOH HOH . 
K 6 HOH A 49 2249 100 HOH HOH . 
K 6 HOH A 50 2250 61 HOH HOH . 
K 6 HOH A 51 2251 68 HOH HOH . 
K 6 HOH A 52 2252 34 HOH HOH . 
K 6 HOH A 53 2253 17 HOH HOH . 
K 6 HOH A 54 2254 93 HOH HOH . 
K 6 HOH A 55 2255 98 HOH HOH . 
K 6 HOH A 56 2256 64 HOH HOH . 
K 6 HOH A 57 2257 118 HOH HOH . 
K 6 HOH A 58 2258 54 HOH HOH . 
K 6 HOH A 59 2259 51 HOH HOH . 
L 6 HOH B 1 501 87 HOH HOH . 
L 6 HOH B 2 502 106 HOH HOH . 
L 6 HOH B 3 503 44 HOH HOH . 
L 6 HOH B 4 504 99 HOH HOH . 
L 6 HOH B 5 505 16 HOH HOH . 
L 6 HOH B 6 506 122 HOH HOH . 
L 6 HOH B 7 507 60 HOH HOH . 
L 6 HOH B 8 508 49 HOH HOH . 
L 6 HOH B 9 509 103 HOH HOH . 
L 6 HOH B 10 510 19 HOH HOH . 
L 6 HOH B 11 511 50 HOH HOH . 
L 6 HOH B 12 512 29 HOH HOH . 
L 6 HOH B 13 513 101 HOH HOH . 
L 6 HOH B 14 514 39 HOH HOH . 
L 6 HOH B 15 515 13 HOH HOH . 
L 6 HOH B 16 516 69 HOH HOH . 
L 6 HOH B 17 517 108 HOH HOH . 
L 6 HOH B 18 518 95 HOH HOH . 
L 6 HOH B 19 519 82 HOH HOH . 
L 6 HOH B 20 520 53 HOH HOH . 
L 6 HOH B 21 521 90 HOH HOH . 
L 6 HOH B 22 522 94 HOH HOH . 
L 6 HOH B 23 523 96 HOH HOH . 
L 6 HOH B 24 524 79 HOH HOH . 
L 6 HOH B 25 525 26 HOH HOH . 
L 6 HOH B 26 526 21 HOH HOH . 
L 6 HOH B 27 527 46 HOH HOH . 
L 6 HOH B 28 528 105 HOH HOH . 
L 6 HOH B 29 529 28 HOH HOH . 
L 6 HOH B 30 530 2 HOH HOH . 
L 6 HOH B 31 531 52 HOH HOH . 
L 6 HOH B 32 532 41 HOH HOH . 
L 6 HOH B 33 533 59 HOH HOH . 
L 6 HOH B 34 534 56 HOH HOH . 
L 6 HOH B 35 535 74 HOH HOH . 
L 6 HOH B 36 536 70 HOH HOH . 
L 6 HOH B 37 537 57 HOH HOH . 
L 6 HOH B 38 538 71 HOH HOH . 
L 6 HOH B 39 539 62 HOH HOH . 
L 6 HOH B 40 540 89 HOH HOH . 
L 6 HOH B 41 541 63 HOH HOH . 
L 6 HOH B 42 542 37 HOH HOH . 
L 6 HOH B 43 543 20 HOH HOH . 
L 6 HOH B 44 544 109 HOH HOH . 
L 6 HOH B 45 545 27 HOH HOH . 
L 6 HOH B 46 546 23 HOH HOH . 
L 6 HOH B 47 547 33 HOH HOH . 
L 6 HOH B 48 548 31 HOH HOH . 
L 6 HOH B 49 549 11 HOH HOH . 
L 6 HOH B 50 550 38 HOH HOH . 
L 6 HOH B 51 551 73 HOH HOH . 
L 6 HOH B 52 552 102 HOH HOH . 
L 6 HOH B 53 553 5 HOH HOH . 
L 6 HOH B 54 554 35 HOH HOH . 
L 6 HOH B 55 555 112 HOH HOH . 
L 6 HOH B 56 556 111 HOH HOH . 
L 6 HOH B 57 557 116 HOH HOH . 
L 6 HOH B 58 558 36 HOH HOH . 
L 6 HOH B 59 559 30 HOH HOH . 
L 6 HOH B 60 560 84 HOH HOH . 
L 6 HOH B 61 561 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PGR . . . E 4 46.92 16.293 40.906 1 45.89 ? C1 PGR 2103 A 1 
HETATM 2 C C2 PGR . . . E 4 46.649 15.358 39.753 1 47.9 ? C2 PGR 2103 A 1 
HETATM 3 C C3 PGR . . . E 4 47.903 15.002 39.022 1 48.36 ? C3 PGR 2103 A 1 
HETATM 4 O O1 PGR . . . E 4 45.76 16.516 41.689 1 45.38 ? O1 PGR 2103 A 1 
HETATM 5 O O2 PGR . . . E 4 46.019 14.169 40.208 1 43.26 ? O2 PGR 2103 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
#