data_5QYG # _model_server_result.job_id dXweKqVdr35XRz_8yILjbQ _model_server_result.datetime_utc '2024-11-22 06:53:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 5QYG # _exptl.entry_id 5QYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.179 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[(methylamino)methyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.7 _cell.angle_gamma 90 _cell.entry_id 5QYG _cell.length_a 88.116 _cell.length_b 82.033 _cell.length_c 92.973 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H11 N O' _chem_comp.formula_weight 137.179 _chem_comp.id RBJ _chem_comp.mon_nstd_flag . _chem_comp.name 4-[(methylamino)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C5 RBJ sing 289 n n C N RBJ sing 290 n n C4 C5 RBJ doub 291 n y C4 C3 RBJ sing 292 n y C5 C6 RBJ sing 293 n y C3 C2 RBJ doub 294 n y C6 C7 RBJ doub 295 n y N C1 RBJ sing 296 n n C2 C7 RBJ sing 297 n y C2 C1 RBJ sing 298 n n C4 H1 RBJ sing 299 n n C6 H2 RBJ sing 300 n n C7 H3 RBJ sing 301 n n O H4 RBJ sing 302 n n C3 H5 RBJ sing 303 n n C1 H6 RBJ sing 304 n n C1 H7 RBJ sing 305 n n N H8 RBJ sing 306 n n C H10 RBJ sing 307 n n C H11 RBJ sing 308 n n C H12 RBJ sing 309 n n # _atom_sites.entry_id 5QYG _atom_sites.fract_transf_matrix[1][1] 0.011349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003622 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01129 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 2101 2101 SO4 SO4 . D 4 PGR A 1 2102 2201 PGR PGR . E 3 SO4 B 1 501 501 SO4 SO4 . F 5 RBJ B 1 502 401 RBJ XXX . G 6 HOH A 1 2201 105 HOH HOH . G 6 HOH A 2 2202 82 HOH HOH . G 6 HOH A 3 2203 11 HOH HOH . G 6 HOH A 4 2204 107 HOH HOH . G 6 HOH A 5 2205 85 HOH HOH . G 6 HOH A 6 2206 8 HOH HOH . G 6 HOH A 7 2207 29 HOH HOH . G 6 HOH A 8 2208 15 HOH HOH . G 6 HOH A 9 2209 60 HOH HOH . G 6 HOH A 10 2210 39 HOH HOH . G 6 HOH A 11 2211 33 HOH HOH . G 6 HOH A 12 2212 59 HOH HOH . G 6 HOH A 13 2213 61 HOH HOH . G 6 HOH A 14 2214 5 HOH HOH . G 6 HOH A 15 2215 18 HOH HOH . G 6 HOH A 16 2216 30 HOH HOH . G 6 HOH A 17 2217 93 HOH HOH . G 6 HOH A 18 2218 90 HOH HOH . G 6 HOH A 19 2219 45 HOH HOH . G 6 HOH A 20 2220 102 HOH HOH . G 6 HOH A 21 2221 87 HOH HOH . G 6 HOH A 22 2222 28 HOH HOH . G 6 HOH A 23 2223 14 HOH HOH . G 6 HOH A 24 2224 75 HOH HOH . G 6 HOH A 25 2225 16 HOH HOH . G 6 HOH A 26 2226 25 HOH HOH . G 6 HOH A 27 2227 13 HOH HOH . G 6 HOH A 28 2228 79 HOH HOH . G 6 HOH A 29 2229 62 HOH HOH . G 6 HOH A 30 2230 72 HOH HOH . G 6 HOH A 31 2231 12 HOH HOH . G 6 HOH A 32 2232 6 HOH HOH . G 6 HOH A 33 2233 9 HOH HOH . G 6 HOH A 34 2234 67 HOH HOH . G 6 HOH A 35 2235 54 HOH HOH . G 6 HOH A 36 2236 35 HOH HOH . G 6 HOH A 37 2237 3 HOH HOH . G 6 HOH A 38 2238 65 HOH HOH . G 6 HOH A 39 2239 37 HOH HOH . G 6 HOH A 40 2240 81 HOH HOH . G 6 HOH A 41 2241 27 HOH HOH . G 6 HOH A 42 2242 19 HOH HOH . G 6 HOH A 43 2243 63 HOH HOH . G 6 HOH A 44 2244 78 HOH HOH . G 6 HOH A 45 2245 56 HOH HOH . G 6 HOH A 46 2246 83 HOH HOH . G 6 HOH A 47 2247 38 HOH HOH . G 6 HOH A 48 2248 68 HOH HOH . G 6 HOH A 49 2249 80 HOH HOH . G 6 HOH A 50 2250 98 HOH HOH . G 6 HOH A 51 2251 23 HOH HOH . G 6 HOH A 52 2252 109 HOH HOH . G 6 HOH A 53 2253 111 HOH HOH . G 6 HOH A 54 2254 110 HOH HOH . G 6 HOH A 55 2255 112 HOH HOH . G 6 HOH A 56 2256 106 HOH HOH . G 6 HOH A 57 2257 92 HOH HOH . G 6 HOH A 58 2258 103 HOH HOH . G 6 HOH A 59 2259 66 HOH HOH . H 6 HOH B 1 601 34 HOH HOH . H 6 HOH B 2 602 104 HOH HOH . H 6 HOH B 3 603 100 HOH HOH . H 6 HOH B 4 604 2 HOH HOH . H 6 HOH B 5 605 40 HOH HOH . H 6 HOH B 6 606 22 HOH HOH . H 6 HOH B 7 607 46 HOH HOH . H 6 HOH B 8 608 69 HOH HOH . H 6 HOH B 9 609 31 HOH HOH . H 6 HOH B 10 610 48 HOH HOH . H 6 HOH B 11 611 96 HOH HOH . H 6 HOH B 12 612 108 HOH HOH . H 6 HOH B 13 613 50 HOH HOH . H 6 HOH B 14 614 21 HOH HOH . H 6 HOH B 15 615 49 HOH HOH . H 6 HOH B 16 616 55 HOH HOH . H 6 HOH B 17 617 52 HOH HOH . H 6 HOH B 18 618 26 HOH HOH . H 6 HOH B 19 619 24 HOH HOH . H 6 HOH B 20 620 86 HOH HOH . H 6 HOH B 21 621 95 HOH HOH . H 6 HOH B 22 622 77 HOH HOH . H 6 HOH B 23 623 97 HOH HOH . H 6 HOH B 24 624 47 HOH HOH . H 6 HOH B 25 625 7 HOH HOH . H 6 HOH B 26 626 57 HOH HOH . H 6 HOH B 27 627 74 HOH HOH . H 6 HOH B 28 628 36 HOH HOH . H 6 HOH B 29 629 71 HOH HOH . H 6 HOH B 30 630 94 HOH HOH . H 6 HOH B 31 631 10 HOH HOH . H 6 HOH B 32 632 51 HOH HOH . H 6 HOH B 33 633 32 HOH HOH . H 6 HOH B 34 634 76 HOH HOH . H 6 HOH B 35 635 53 HOH HOH . H 6 HOH B 36 636 73 HOH HOH . H 6 HOH B 37 637 91 HOH HOH . H 6 HOH B 38 638 43 HOH HOH . H 6 HOH B 39 639 70 HOH HOH . H 6 HOH B 40 640 58 HOH HOH . H 6 HOH B 41 641 44 HOH HOH . H 6 HOH B 42 642 41 HOH HOH . H 6 HOH B 43 643 88 HOH HOH . H 6 HOH B 44 644 20 HOH HOH . H 6 HOH B 45 645 17 HOH HOH . H 6 HOH B 46 646 101 HOH HOH . H 6 HOH B 47 647 4 HOH HOH . H 6 HOH B 48 648 42 HOH HOH . H 6 HOH B 49 649 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 RBJ . D . F 5 17.42 3.024 15.706 0.18 36.85 ? C4 RBJ 502 B 1 HETATM 2 C C4 RBJ . E . F 5 17.43 3.216 15.574 0.29 34.8 ? C4 RBJ 502 B 1 HETATM 3 C C4 RBJ . F . F 5 17.419 3.01 15.718 0.17 37.05 ? C4 RBJ 502 B 1 HETATM 4 C C5 RBJ . D . F 5 16.081 3.26 15.992 0.18 36.94 ? C5 RBJ 502 B 1 HETATM 5 C C5 RBJ . E . F 5 16.094 3.417 15.9 0.29 35.14 ? C5 RBJ 502 B 1 HETATM 6 C C5 RBJ . F . F 5 16.08 3.247 16 0.17 37.13 ? C5 RBJ 502 B 1 HETATM 7 C C6 RBJ . D . F 5 15.731 4.104 17.054 0.18 35.96 ? C6 RBJ 502 B 1 HETATM 8 C C6 RBJ . E . F 5 15.755 4.184 17.03 0.29 33.45 ? C6 RBJ 502 B 1 HETATM 9 C C6 RBJ . F . F 5 15.729 4.096 17.056 0.17 36.22 ? C6 RBJ 502 B 1 HETATM 10 C C7 RBJ . D . F 5 16.724 4.699 17.827 0.18 35.53 ? C7 RBJ 502 B 1 HETATM 11 C C7 RBJ . E . F 5 16.759 4.725 17.829 0.29 33.03 ? C7 RBJ 502 B 1 HETATM 12 C C7 RBJ . F . F 5 16.72 4.696 17.828 0.17 35.81 ? C7 RBJ 502 B 1 HETATM 13 O O RBJ . D . F 5 15.11 2.674 15.233 0.18 38.5 ? O RBJ 502 B 1 HETATM 14 O O RBJ . E . F 5 15.117 2.879 15.112 0.29 37.32 ? O RBJ 502 B 1 HETATM 15 O O RBJ . F . F 5 15.111 2.657 15.243 0.17 38.62 ? O RBJ 502 B 1 HETATM 16 C C3 RBJ . D . F 5 18.418 3.627 16.484 0.18 35.96 ? C3 RBJ 502 B 1 HETATM 17 C C3 RBJ . E . F 5 18.441 3.771 16.379 0.29 33.53 ? C3 RBJ 502 B 1 HETATM 18 C C3 RBJ . F . F 5 18.415 3.616 16.494 0.17 36.21 ? C3 RBJ 502 B 1 HETATM 19 C C2 RBJ . D . F 5 18.066 4.453 17.543 0.18 34.78 ? C2 RBJ 502 B 1 HETATM 20 C C2 RBJ . E . F 5 18.1 4.504 17.506 0.29 31.88 ? C2 RBJ 502 B 1 HETATM 21 C C2 RBJ . F . F 5 18.063 4.449 17.547 0.17 35.1 ? C2 RBJ 502 B 1 HETATM 22 C C1 RBJ . D . F 5 19.141 5.111 18.38 0.18 35.09 ? C1 RBJ 502 B 1 HETATM 23 C C1 RBJ . E . F 5 19.187 5.114 18.367 0.29 32.42 ? C1 RBJ 502 B 1 HETATM 24 C C1 RBJ . F . F 5 19.136 5.111 18.383 0.17 35.4 ? C1 RBJ 502 B 1 HETATM 25 N N RBJ . D . F 5 19.598 4.225 19.46 0.18 34.46 1 N RBJ 502 B 1 HETATM 26 N N RBJ . E . F 5 19.607 4.22 19.452 0.29 31.4 1 N RBJ 502 B 1 HETATM 27 N N RBJ . F . F 5 19.597 4.226 19.462 0.17 34.81 1 N RBJ 502 B 1 HETATM 28 C C RBJ . D . F 5 18.456 3.805 20.294 0.18 34.24 ? C RBJ 502 B 1 HETATM 29 C C RBJ . E . F 5 18.442 3.778 20.244 0.29 31.23 ? C RBJ 502 B 1 HETATM 30 C C RBJ . F . F 5 18.458 3.81 20.302 0.17 34.6 ? C RBJ 502 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 30 #