data_5QYH # _model_server_result.job_id aJdWOgE-vmvIUelJssesQQ _model_server_result.datetime_utc '2024-11-22 06:30:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2105}' # _entry.id 5QYH # _exptl.entry_id 5QYH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description R-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.03 _cell.angle_gamma 90 _cell.entry_id 5QYH _cell.length_a 88.617 _cell.length_b 81.712 _cell.length_c 94.201 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 H N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGR _chem_comp.mon_nstd_flag . _chem_comp.name R-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGR sing 237 n n C1 O1 PGR sing 238 n n C1 H11 PGR sing 239 n n C1 H12 PGR sing 240 n n C2 C3 PGR sing 241 n n C2 O2 PGR sing 242 n n C2 H2 PGR sing 243 n n C3 H31 PGR sing 244 n n C3 H32 PGR sing 245 n n C3 H33 PGR sing 246 n n O1 HO1 PGR sing 247 n n O2 HO2 PGR sing 248 n n # _atom_sites.entry_id 5QYH _atom_sites.fract_transf_matrix[1][1] 0.011285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003893 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012238 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01123 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 T9V A 1 2101 2101 T9V XXX . D 4 SO4 A 1 2102 2201 SO4 SO4 . E 4 SO4 A 1 2103 2301 SO4 SO4 . F 5 PGR A 1 2104 2401 PGR PGR . G 5 PGR A 1 2105 2501 PGR PGR . H 5 PGR A 1 2106 2601 PGR PGR . I 4 SO4 B 1 401 401 SO4 SO4 . J 6 HOH A 1 2201 129 HOH HOH . J 6 HOH A 2 2202 115 HOH HOH . J 6 HOH A 3 2203 97 HOH HOH . J 6 HOH A 4 2204 135 HOH HOH . J 6 HOH A 5 2205 130 HOH HOH . J 6 HOH A 6 2206 43 HOH HOH . J 6 HOH A 7 2207 35 HOH HOH . J 6 HOH A 8 2208 5 HOH HOH . J 6 HOH A 9 2209 58 HOH HOH . J 6 HOH A 10 2210 7 HOH HOH . J 6 HOH A 11 2211 68 HOH HOH . J 6 HOH A 12 2212 112 HOH HOH . J 6 HOH A 13 2213 64 HOH HOH . J 6 HOH A 14 2214 69 HOH HOH . J 6 HOH A 15 2215 37 HOH HOH . J 6 HOH A 16 2216 123 HOH HOH . J 6 HOH A 17 2217 98 HOH HOH . J 6 HOH A 18 2218 127 HOH HOH . J 6 HOH A 19 2219 32 HOH HOH . J 6 HOH A 20 2220 105 HOH HOH . J 6 HOH A 21 2221 85 HOH HOH . J 6 HOH A 22 2222 96 HOH HOH . J 6 HOH A 23 2223 45 HOH HOH . J 6 HOH A 24 2224 29 HOH HOH . J 6 HOH A 25 2225 14 HOH HOH . J 6 HOH A 26 2226 38 HOH HOH . J 6 HOH A 27 2227 122 HOH HOH . J 6 HOH A 28 2228 24 HOH HOH . J 6 HOH A 29 2229 78 HOH HOH . J 6 HOH A 30 2230 21 HOH HOH . J 6 HOH A 31 2231 131 HOH HOH . J 6 HOH A 32 2232 9 HOH HOH . J 6 HOH A 33 2233 104 HOH HOH . J 6 HOH A 34 2234 30 HOH HOH . J 6 HOH A 35 2235 8 HOH HOH . J 6 HOH A 36 2236 22 HOH HOH . J 6 HOH A 37 2237 19 HOH HOH . J 6 HOH A 38 2238 94 HOH HOH . J 6 HOH A 39 2239 79 HOH HOH . J 6 HOH A 40 2240 25 HOH HOH . J 6 HOH A 41 2241 93 HOH HOH . J 6 HOH A 42 2242 15 HOH HOH . J 6 HOH A 43 2243 3 HOH HOH . J 6 HOH A 44 2244 72 HOH HOH . J 6 HOH A 45 2245 91 HOH HOH . J 6 HOH A 46 2246 16 HOH HOH . J 6 HOH A 47 2247 80 HOH HOH . J 6 HOH A 48 2248 51 HOH HOH . J 6 HOH A 49 2249 71 HOH HOH . J 6 HOH A 50 2250 121 HOH HOH . J 6 HOH A 51 2251 11 HOH HOH . J 6 HOH A 52 2252 67 HOH HOH . J 6 HOH A 53 2253 28 HOH HOH . J 6 HOH A 54 2254 70 HOH HOH . J 6 HOH A 55 2255 46 HOH HOH . J 6 HOH A 56 2256 47 HOH HOH . J 6 HOH A 57 2257 73 HOH HOH . J 6 HOH A 58 2258 50 HOH HOH . J 6 HOH A 59 2259 26 HOH HOH . J 6 HOH A 60 2260 36 HOH HOH . J 6 HOH A 61 2261 61 HOH HOH . J 6 HOH A 62 2262 4 HOH HOH . J 6 HOH A 63 2263 106 HOH HOH . J 6 HOH A 64 2264 86 HOH HOH . J 6 HOH A 65 2265 17 HOH HOH . J 6 HOH A 66 2266 63 HOH HOH . J 6 HOH A 67 2267 128 HOH HOH . J 6 HOH A 68 2268 102 HOH HOH . J 6 HOH A 69 2269 41 HOH HOH . K 6 HOH B 1 501 87 HOH HOH . K 6 HOH B 2 502 118 HOH HOH . K 6 HOH B 3 503 125 HOH HOH . K 6 HOH B 4 504 65 HOH HOH . K 6 HOH B 5 505 99 HOH HOH . K 6 HOH B 6 506 27 HOH HOH . K 6 HOH B 7 507 57 HOH HOH . K 6 HOH B 8 508 31 HOH HOH . K 6 HOH B 9 509 62 HOH HOH . K 6 HOH B 10 510 101 HOH HOH . K 6 HOH B 11 511 117 HOH HOH . K 6 HOH B 12 512 116 HOH HOH . K 6 HOH B 13 513 120 HOH HOH . K 6 HOH B 14 514 133 HOH HOH . K 6 HOH B 15 515 18 HOH HOH . K 6 HOH B 16 516 134 HOH HOH . K 6 HOH B 17 517 77 HOH HOH . K 6 HOH B 18 518 114 HOH HOH . K 6 HOH B 19 519 100 HOH HOH . K 6 HOH B 20 520 107 HOH HOH . K 6 HOH B 21 521 10 HOH HOH . K 6 HOH B 22 522 82 HOH HOH . K 6 HOH B 23 523 75 HOH HOH . K 6 HOH B 24 524 39 HOH HOH . K 6 HOH B 25 525 83 HOH HOH . K 6 HOH B 26 526 89 HOH HOH . K 6 HOH B 27 527 42 HOH HOH . K 6 HOH B 28 528 90 HOH HOH . K 6 HOH B 29 529 33 HOH HOH . K 6 HOH B 30 530 95 HOH HOH . K 6 HOH B 31 531 56 HOH HOH . K 6 HOH B 32 532 54 HOH HOH . K 6 HOH B 33 533 81 HOH HOH . K 6 HOH B 34 534 48 HOH HOH . K 6 HOH B 35 535 84 HOH HOH . K 6 HOH B 36 536 74 HOH HOH . K 6 HOH B 37 537 119 HOH HOH . K 6 HOH B 38 538 108 HOH HOH . K 6 HOH B 39 539 66 HOH HOH . K 6 HOH B 40 540 13 HOH HOH . K 6 HOH B 41 541 88 HOH HOH . K 6 HOH B 42 542 92 HOH HOH . K 6 HOH B 43 543 103 HOH HOH . K 6 HOH B 44 544 109 HOH HOH . K 6 HOH B 45 545 6 HOH HOH . K 6 HOH B 46 546 44 HOH HOH . K 6 HOH B 47 547 111 HOH HOH . K 6 HOH B 48 548 76 HOH HOH . K 6 HOH B 49 549 60 HOH HOH . K 6 HOH B 50 550 49 HOH HOH . K 6 HOH B 51 551 59 HOH HOH . K 6 HOH B 52 552 52 HOH HOH . K 6 HOH B 53 553 124 HOH HOH . K 6 HOH B 54 554 40 HOH HOH . K 6 HOH B 55 555 132 HOH HOH . K 6 HOH B 56 556 2 HOH HOH . K 6 HOH B 57 557 53 HOH HOH . K 6 HOH B 58 558 113 HOH HOH . K 6 HOH B 59 559 55 HOH HOH . K 6 HOH B 60 560 23 HOH HOH . K 6 HOH B 61 561 12 HOH HOH . K 6 HOH B 62 562 110 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGR . . . G 5 22.989 15.068 14.243 1 31.77 ? C1 PGR 2105 A 1 HETATM 2 C C2 PGR . . . G 5 24.295 15.71 13.898 1 35.97 ? C2 PGR 2105 A 1 HETATM 3 C C3 PGR . . . G 5 24.65 15.661 12.432 1 44.7 ? C3 PGR 2105 A 1 HETATM 4 O O1 PGR . . . G 5 22.938 13.745 13.725 1 56.19 ? O1 PGR 2105 A 1 HETATM 5 O O2 PGR . . . G 5 24.171 17.004 14.355 1 38.93 ? O2 PGR 2105 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #