data_5QYI # _model_server_result.job_id V6AGWnS2k_iLOZ4wenTxFw _model_server_result.datetime_utc '2024-11-05 00:38:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2103}' # _entry.id 5QYI # _exptl.entry_id 5QYI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description R-1,2-PROPANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.02 _cell.angle_gamma 90 _cell.entry_id 5QYI _cell.length_a 89.201 _cell.length_b 82.166 _cell.length_c 93.289 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYI _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PGR _chem_comp.mon_nstd_flag . _chem_comp.name R-1,2-PROPANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PGR sing 237 n n C1 O1 PGR sing 238 n n C1 H11 PGR sing 239 n n C1 H12 PGR sing 240 n n C2 C3 PGR sing 241 n n C2 O2 PGR sing 242 n n C2 H2 PGR sing 243 n n C3 H31 PGR sing 244 n n C3 H32 PGR sing 245 n n C3 H33 PGR sing 246 n n O1 HO1 PGR sing 247 n n O2 HO2 PGR sing 248 n n # _atom_sites.entry_id 5QYI _atom_sites.fract_transf_matrix[1][1] 0.011211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003648 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01217 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 2101 2101 SO4 SO4 . D 3 SO4 A 1 2102 2201 SO4 SO4 . E 4 PGR A 1 2103 2301 PGR PGR . F 4 PGR A 1 2104 2401 PGR PGR . G 4 PGR A 1 2105 2501 PGR PGR . H 5 SZ7 B 1 401 401 SZ7 XXX . I 6 HOH A 1 2201 118 HOH HOH . I 6 HOH A 2 2202 52 HOH HOH . I 6 HOH A 3 2203 85 HOH HOH . I 6 HOH A 4 2204 64 HOH HOH . I 6 HOH A 5 2205 83 HOH HOH . I 6 HOH A 6 2206 34 HOH HOH . I 6 HOH A 7 2207 14 HOH HOH . I 6 HOH A 8 2208 19 HOH HOH . I 6 HOH A 9 2209 30 HOH HOH . I 6 HOH A 10 2210 65 HOH HOH . I 6 HOH A 11 2211 33 HOH HOH . I 6 HOH A 12 2212 87 HOH HOH . I 6 HOH A 13 2213 79 HOH HOH . I 6 HOH A 14 2214 6 HOH HOH . I 6 HOH A 15 2215 103 HOH HOH . I 6 HOH A 16 2216 99 HOH HOH . I 6 HOH A 17 2217 91 HOH HOH . I 6 HOH A 18 2218 67 HOH HOH . I 6 HOH A 19 2219 80 HOH HOH . I 6 HOH A 20 2220 76 HOH HOH . I 6 HOH A 21 2221 101 HOH HOH . I 6 HOH A 22 2222 122 HOH HOH . I 6 HOH A 23 2223 117 HOH HOH . I 6 HOH A 24 2224 92 HOH HOH . I 6 HOH A 25 2225 3 HOH HOH . I 6 HOH A 26 2226 22 HOH HOH . I 6 HOH A 27 2227 15 HOH HOH . I 6 HOH A 28 2228 29 HOH HOH . I 6 HOH A 29 2229 75 HOH HOH . I 6 HOH A 30 2230 17 HOH HOH . I 6 HOH A 31 2231 93 HOH HOH . I 6 HOH A 32 2232 12 HOH HOH . I 6 HOH A 33 2233 40 HOH HOH . I 6 HOH A 34 2234 43 HOH HOH . I 6 HOH A 35 2235 63 HOH HOH . I 6 HOH A 36 2236 68 HOH HOH . I 6 HOH A 37 2237 45 HOH HOH . I 6 HOH A 38 2238 20 HOH HOH . I 6 HOH A 39 2239 57 HOH HOH . I 6 HOH A 40 2240 9 HOH HOH . I 6 HOH A 41 2241 94 HOH HOH . I 6 HOH A 42 2242 38 HOH HOH . I 6 HOH A 43 2243 37 HOH HOH . I 6 HOH A 44 2244 47 HOH HOH . I 6 HOH A 45 2245 32 HOH HOH . I 6 HOH A 46 2246 98 HOH HOH . I 6 HOH A 47 2247 4 HOH HOH . I 6 HOH A 48 2248 104 HOH HOH . I 6 HOH A 49 2249 50 HOH HOH . I 6 HOH A 50 2250 89 HOH HOH . I 6 HOH A 51 2251 54 HOH HOH . I 6 HOH A 52 2252 31 HOH HOH . I 6 HOH A 53 2253 82 HOH HOH . I 6 HOH A 54 2254 105 HOH HOH . I 6 HOH A 55 2255 115 HOH HOH . I 6 HOH A 56 2256 100 HOH HOH . I 6 HOH A 57 2257 71 HOH HOH . J 6 HOH B 1 501 48 HOH HOH . J 6 HOH B 2 502 120 HOH HOH . J 6 HOH B 3 503 90 HOH HOH . J 6 HOH B 4 504 110 HOH HOH . J 6 HOH B 5 505 84 HOH HOH . J 6 HOH B 6 506 78 HOH HOH . J 6 HOH B 7 507 24 HOH HOH . J 6 HOH B 8 508 121 HOH HOH . J 6 HOH B 9 509 41 HOH HOH . J 6 HOH B 10 510 10 HOH HOH . J 6 HOH B 11 511 25 HOH HOH . J 6 HOH B 12 512 7 HOH HOH . J 6 HOH B 13 513 97 HOH HOH . J 6 HOH B 14 514 119 HOH HOH . J 6 HOH B 15 515 74 HOH HOH . J 6 HOH B 16 516 73 HOH HOH . J 6 HOH B 17 517 112 HOH HOH . J 6 HOH B 18 518 21 HOH HOH . J 6 HOH B 19 519 28 HOH HOH . J 6 HOH B 20 520 102 HOH HOH . J 6 HOH B 21 521 86 HOH HOH . J 6 HOH B 22 522 60 HOH HOH . J 6 HOH B 23 523 26 HOH HOH . J 6 HOH B 24 524 13 HOH HOH . J 6 HOH B 25 525 88 HOH HOH . J 6 HOH B 26 526 62 HOH HOH . J 6 HOH B 27 527 23 HOH HOH . J 6 HOH B 28 528 58 HOH HOH . J 6 HOH B 29 529 81 HOH HOH . J 6 HOH B 30 530 69 HOH HOH . J 6 HOH B 31 531 72 HOH HOH . J 6 HOH B 32 532 77 HOH HOH . J 6 HOH B 33 533 49 HOH HOH . J 6 HOH B 34 534 27 HOH HOH . J 6 HOH B 35 535 2 HOH HOH . J 6 HOH B 36 536 36 HOH HOH . J 6 HOH B 37 537 51 HOH HOH . J 6 HOH B 38 538 16 HOH HOH . J 6 HOH B 39 539 113 HOH HOH . J 6 HOH B 40 540 18 HOH HOH . J 6 HOH B 41 541 42 HOH HOH . J 6 HOH B 42 542 59 HOH HOH . J 6 HOH B 43 543 46 HOH HOH . J 6 HOH B 44 544 109 HOH HOH . J 6 HOH B 45 545 70 HOH HOH . J 6 HOH B 46 546 55 HOH HOH . J 6 HOH B 47 547 61 HOH HOH . J 6 HOH B 48 548 8 HOH HOH . J 6 HOH B 49 549 111 HOH HOH . J 6 HOH B 50 550 108 HOH HOH . J 6 HOH B 51 551 96 HOH HOH . J 6 HOH B 52 552 39 HOH HOH . J 6 HOH B 53 553 114 HOH HOH . J 6 HOH B 54 554 5 HOH HOH . J 6 HOH B 55 555 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGR . . . E 4 47.919 16.588 40.27 1 44.26 ? C1 PGR 2103 A 1 HETATM 2 C C2 PGR . . . E 4 47.812 15.372 39.378 1 46.35 ? C2 PGR 2103 A 1 HETATM 3 C C3 PGR . . . E 4 49.151 14.818 39.018 1 48.22 ? C3 PGR 2103 A 1 HETATM 4 O O1 PGR . . . E 4 46.921 16.635 41.283 1 46.23 ? O1 PGR 2103 A 1 HETATM 5 O O2 PGR . . . E 4 47.048 14.352 39.971 1 39.82 ? O2 PGR 2103 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #