data_5QYK # _model_server_result.job_id a4gi6ZA7zKAgbF5smcJTjg _model_server_result.datetime_utc '2024-11-12 21:25:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5qyk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 5QYK # _exptl.entry_id 5QYK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.301 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-(2-thiophen-2-ylethyl)pyridine-4-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.56 _cell.angle_gamma 90 _cell.entry_id 5QYK _cell.length_a 89.336 _cell.length_b 81.876 _cell.length_c 93.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5QYK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H12 N2 O S' _chem_comp.formula_weight 232.301 _chem_comp.id SZA _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-(2-thiophen-2-ylethyl)pyridine-4-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C10 SZA doub 306 n y N1 C9 SZA sing 307 n y C10 C11 SZA sing 308 n y C9 C8 SZA doub 309 n y C11 C7 SZA doub 310 n y C8 C7 SZA sing 311 n y C7 C6 SZA sing 312 n n C6 O SZA doub 313 n n C6 N SZA sing 314 n n N C5 SZA sing 315 n n C5 C4 SZA sing 316 n n C4 C2 SZA sing 317 n n C2 C1 SZA doub 318 n y C2 S SZA sing 319 n y C1 C SZA sing 320 n y C C3 SZA doub 321 n y S C3 SZA sing 322 n y C4 H1 SZA sing 323 n n C4 H2 SZA sing 324 n n C5 H3 SZA sing 325 n n C5 H4 SZA sing 326 n n C8 H5 SZA sing 327 n n C9 H6 SZA sing 328 n n C10 H7 SZA sing 329 n n C11 H8 SZA sing 330 n n N H9 SZA sing 331 n n C1 H10 SZA sing 332 n n C3 H11 SZA sing 333 n n C H12 SZA sing 334 n n # _atom_sites.entry_id 5QYK _atom_sites.fract_transf_matrix[1][1] 0.011194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003758 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 2101 2101 SO4 SO4 . D 4 PGR A 1 2102 2201 PGR PGR . E 4 PGR A 1 2103 2301 PGR PGR . F 3 SO4 A 1 2104 2401 SO4 SO4 . G 4 PGR A 1 2105 2501 PGR PGR . H 5 SZA B 1 401 401 SZA XXX . I 3 SO4 B 1 402 501 SO4 SO4 . J 6 HOH A 1 2201 110 HOH HOH . J 6 HOH A 2 2202 46 HOH HOH . J 6 HOH A 3 2203 81 HOH HOH . J 6 HOH A 4 2204 42 HOH HOH . J 6 HOH A 5 2205 66 HOH HOH . J 6 HOH A 6 2206 33 HOH HOH . J 6 HOH A 7 2207 40 HOH HOH . J 6 HOH A 8 2208 22 HOH HOH . J 6 HOH A 9 2209 4 HOH HOH . J 6 HOH A 10 2210 111 HOH HOH . J 6 HOH A 11 2211 38 HOH HOH . J 6 HOH A 12 2212 43 HOH HOH . J 6 HOH A 13 2213 12 HOH HOH . J 6 HOH A 14 2214 88 HOH HOH . J 6 HOH A 15 2215 35 HOH HOH . J 6 HOH A 16 2216 2 HOH HOH . J 6 HOH A 17 2217 41 HOH HOH . J 6 HOH A 18 2218 24 HOH HOH . J 6 HOH A 19 2219 59 HOH HOH . J 6 HOH A 20 2220 69 HOH HOH . J 6 HOH A 21 2221 14 HOH HOH . J 6 HOH A 22 2222 68 HOH HOH . J 6 HOH A 23 2223 85 HOH HOH . J 6 HOH A 24 2224 92 HOH HOH . J 6 HOH A 25 2225 20 HOH HOH . J 6 HOH A 26 2226 8 HOH HOH . J 6 HOH A 27 2227 7 HOH HOH . J 6 HOH A 28 2228 73 HOH HOH . J 6 HOH A 29 2229 30 HOH HOH . J 6 HOH A 30 2230 44 HOH HOH . J 6 HOH A 31 2231 13 HOH HOH . J 6 HOH A 32 2232 98 HOH HOH . J 6 HOH A 33 2233 11 HOH HOH . J 6 HOH A 34 2234 89 HOH HOH . J 6 HOH A 35 2235 109 HOH HOH . J 6 HOH A 36 2236 51 HOH HOH . J 6 HOH A 37 2237 6 HOH HOH . J 6 HOH A 38 2238 45 HOH HOH . J 6 HOH A 39 2239 82 HOH HOH . J 6 HOH A 40 2240 31 HOH HOH . J 6 HOH A 41 2241 36 HOH HOH . J 6 HOH A 42 2242 60 HOH HOH . J 6 HOH A 43 2243 19 HOH HOH . J 6 HOH A 44 2244 79 HOH HOH . J 6 HOH A 45 2245 105 HOH HOH . J 6 HOH A 46 2246 97 HOH HOH . J 6 HOH A 47 2247 32 HOH HOH . J 6 HOH A 48 2248 75 HOH HOH . J 6 HOH A 49 2249 17 HOH HOH . J 6 HOH A 50 2250 18 HOH HOH . J 6 HOH A 51 2251 96 HOH HOH . J 6 HOH A 52 2252 84 HOH HOH . J 6 HOH A 53 2253 3 HOH HOH . J 6 HOH A 54 2254 34 HOH HOH . J 6 HOH A 55 2255 57 HOH HOH . J 6 HOH A 56 2256 112 HOH HOH . J 6 HOH A 57 2257 106 HOH HOH . K 6 HOH B 1 501 93 HOH HOH . K 6 HOH B 2 502 108 HOH HOH . K 6 HOH B 3 503 83 HOH HOH . K 6 HOH B 4 504 21 HOH HOH . K 6 HOH B 5 505 63 HOH HOH . K 6 HOH B 6 506 86 HOH HOH . K 6 HOH B 7 507 64 HOH HOH . K 6 HOH B 8 508 9 HOH HOH . K 6 HOH B 9 509 87 HOH HOH . K 6 HOH B 10 510 70 HOH HOH . K 6 HOH B 11 511 91 HOH HOH . K 6 HOH B 12 512 78 HOH HOH . K 6 HOH B 13 513 58 HOH HOH . K 6 HOH B 14 514 74 HOH HOH . K 6 HOH B 15 515 65 HOH HOH . K 6 HOH B 16 516 95 HOH HOH . K 6 HOH B 17 517 54 HOH HOH . K 6 HOH B 18 518 99 HOH HOH . K 6 HOH B 19 519 113 HOH HOH . K 6 HOH B 20 520 67 HOH HOH . K 6 HOH B 21 521 15 HOH HOH . K 6 HOH B 22 522 104 HOH HOH . K 6 HOH B 23 523 37 HOH HOH . K 6 HOH B 24 524 29 HOH HOH . K 6 HOH B 25 525 94 HOH HOH . K 6 HOH B 26 526 71 HOH HOH . K 6 HOH B 27 527 55 HOH HOH . K 6 HOH B 28 528 62 HOH HOH . K 6 HOH B 29 529 80 HOH HOH . K 6 HOH B 30 530 114 HOH HOH . K 6 HOH B 31 531 28 HOH HOH . K 6 HOH B 32 532 47 HOH HOH . K 6 HOH B 33 533 23 HOH HOH . K 6 HOH B 34 534 25 HOH HOH . K 6 HOH B 35 535 49 HOH HOH . K 6 HOH B 36 536 53 HOH HOH . K 6 HOH B 37 537 50 HOH HOH . K 6 HOH B 38 538 26 HOH HOH . K 6 HOH B 39 539 27 HOH HOH . K 6 HOH B 40 540 39 HOH HOH . K 6 HOH B 41 541 5 HOH HOH . K 6 HOH B 42 542 10 HOH HOH . K 6 HOH B 43 543 76 HOH HOH . K 6 HOH B 44 544 56 HOH HOH . K 6 HOH B 45 545 103 HOH HOH . K 6 HOH B 46 546 48 HOH HOH . K 6 HOH B 47 547 107 HOH HOH . K 6 HOH B 48 548 52 HOH HOH . K 6 HOH B 49 549 72 HOH HOH . K 6 HOH B 50 550 61 HOH HOH . K 6 HOH B 51 551 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SZA . D . H 5 14.576 11.788 -42.143 0.11 53.33 ? C4 SZA 401 B 1 HETATM 2 C C4 SZA . E . H 5 14.58 11.787 -42.144 0.11 53.33 ? C4 SZA 401 B 1 HETATM 3 C C4 SZA . F . H 5 14.579 11.788 -42.141 0.11 53.38 ? C4 SZA 401 B 1 HETATM 4 C C5 SZA . D . H 5 14.029 12.572 -43.427 0.11 55.65 ? C5 SZA 401 B 1 HETATM 5 C C5 SZA . E . H 5 14.031 12.571 -43.427 0.11 55.66 ? C5 SZA 401 B 1 HETATM 6 C C5 SZA . F . H 5 14.033 12.573 -43.426 0.11 55.68 ? C5 SZA 401 B 1 HETATM 7 C C6 SZA . D . H 5 14.694 12.564 -45.785 0.11 55.12 ? C6 SZA 401 B 1 HETATM 8 C C6 SZA . E . H 5 14.693 12.562 -45.786 0.11 55.12 ? C6 SZA 401 B 1 HETATM 9 C C6 SZA . F . H 5 14.694 12.564 -45.786 0.11 55.12 ? C6 SZA 401 B 1 HETATM 10 N N1 SZA . D . H 5 12.04 12.735 -49.138 0.11 53.89 ? N1 SZA 401 B 1 HETATM 11 N N1 SZA . E . H 5 12.038 12.735 -49.139 0.11 53.89 ? N1 SZA 401 B 1 HETATM 12 N N1 SZA . F . H 5 12.034 12.734 -49.138 0.11 53.89 ? N1 SZA 401 B 1 HETATM 13 C C7 SZA . D . H 5 13.64 12.821 -46.817 0.11 54.63 ? C7 SZA 401 B 1 HETATM 14 C C7 SZA . E . H 5 13.638 12.82 -46.818 0.11 54.62 ? C7 SZA 401 B 1 HETATM 15 C C7 SZA . F . H 5 13.638 12.816 -46.82 0.11 54.63 ? C7 SZA 401 B 1 HETATM 16 C C8 SZA . D . H 5 13.852 13.714 -47.866 0.11 55.29 ? C8 SZA 401 B 1 HETATM 17 C C8 SZA . E . H 5 13.851 13.714 -47.866 0.11 55.29 ? C8 SZA 401 B 1 HETATM 18 C C8 SZA . F . H 5 13.849 13.711 -47.868 0.11 55.3 ? C8 SZA 401 B 1 HETATM 19 C C9 SZA . D . H 5 13.079 13.58 -49.028 0.11 53.71 ? C9 SZA 401 B 1 HETATM 20 C C9 SZA . E . H 5 13.077 13.58 -49.028 0.11 53.71 ? C9 SZA 401 B 1 HETATM 21 C C9 SZA . F . H 5 13.073 13.578 -49.028 0.11 53.71 ? C9 SZA 401 B 1 HETATM 22 C C10 SZA . D . H 5 11.777 11.964 -48.072 0.11 54.1 ? C10 SZA 401 B 1 HETATM 23 C C10 SZA . E . H 5 11.775 11.964 -48.073 0.11 54.1 ? C10 SZA 401 B 1 HETATM 24 C C10 SZA . F . H 5 11.774 11.961 -48.073 0.11 54.11 ? C10 SZA 401 B 1 HETATM 25 C C11 SZA . D . H 5 12.551 11.95 -46.913 0.11 54.58 ? C11 SZA 401 B 1 HETATM 26 C C11 SZA . E . H 5 12.549 11.949 -46.914 0.11 54.58 ? C11 SZA 401 B 1 HETATM 27 C C11 SZA . F . H 5 12.55 11.945 -46.916 0.11 54.58 ? C11 SZA 401 B 1 HETATM 28 O O SZA . D . H 5 15.882 12.913 -45.981 0.11 56.93 ? O SZA 401 B 1 HETATM 29 O O SZA . E . H 5 15.88 12.911 -45.984 0.11 56.92 ? O SZA 401 B 1 HETATM 30 O O SZA . F . H 5 15.881 12.912 -45.986 0.11 56.95 ? O SZA 401 B 1 HETATM 31 N N SZA . D . H 5 14.274 11.894 -44.698 0.11 53.66 ? N SZA 401 B 1 HETATM 32 N N SZA . E . H 5 14.274 11.893 -44.699 0.11 53.66 ? N SZA 401 B 1 HETATM 33 N N SZA . F . H 5 14.277 11.895 -44.698 0.11 53.67 ? N SZA 401 B 1 HETATM 34 C C2 SZA . D . H 5 15.449 12.794 -41.368 0.11 53.59 ? C2 SZA 401 B 1 HETATM 35 C C2 SZA . E . H 5 15.453 12.794 -41.369 0.11 53.59 ? C2 SZA 401 B 1 HETATM 36 C C2 SZA . F . H 5 15.456 12.791 -41.366 0.11 53.64 ? C2 SZA 401 B 1 HETATM 37 C C1 SZA . D . H 5 15.114 13.86 -40.459 0.11 54.42 ? C1 SZA 401 B 1 HETATM 38 C C1 SZA . E . H 5 15.117 13.861 -40.461 0.11 54.42 ? C1 SZA 401 B 1 HETATM 39 C C1 SZA . F . H 5 15.127 13.86 -40.459 0.11 54.46 ? C1 SZA 401 B 1 HETATM 40 S S SZA . D . H 5 17.435 12.972 -41.73 0.11 57.78 ? S SZA 401 B 1 HETATM 41 S S SZA . E . H 5 17.438 12.971 -41.729 0.11 57.78 ? S SZA 401 B 1 HETATM 42 S S SZA . F . H 5 17.451 12.967 -41.735 0.11 57.84 ? S SZA 401 B 1 HETATM 43 C C3 SZA . D . H 5 17.584 14.361 -40.729 0.11 53.74 ? C3 SZA 401 B 1 HETATM 44 C C3 SZA . E . H 5 17.586 14.362 -40.728 0.11 53.75 ? C3 SZA 401 B 1 HETATM 45 C C3 SZA . F . H 5 17.607 14.367 -40.735 0.11 54.21 ? C3 SZA 401 B 1 HETATM 46 C C SZA . D . H 5 16.396 14.759 -40.14 0.11 53.7 ? C SZA 401 B 1 HETATM 47 C C SZA . E . H 5 16.398 14.76 -40.14 0.11 53.7 ? C SZA 401 B 1 HETATM 48 C C SZA . F . H 5 16.418 14.763 -40.146 0.11 53.78 ? C SZA 401 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #