data_5R09 # _model_server_result.job_id Phx1d5Fql8D-pRImOWB38w _model_server_result.datetime_utc '2025-01-11 02:02:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r09 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5R09 # _exptl.entry_id 5R09 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.206 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 2-[(1~{S})-1-azanylpropyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.42 _cell.angle_gamma 90 _cell.entry_id 5R09 _cell.length_a 88.612 _cell.length_b 81.915 _cell.length_c 93.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R09 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 N O' _chem_comp.formula_weight 151.206 _chem_comp.id SYG _chem_comp.mon_nstd_flag . _chem_comp.name 2-[(1~{S})-1-azanylpropyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 C7 SYG doub 290 n y C6 C5 SYG sing 291 n y C7 C8 SYG sing 292 n y C5 C4 SYG doub 293 n y C8 O SYG sing 294 n n C8 C3 SYG doub 295 n y N C2 SYG sing 296 n n C4 C3 SYG sing 297 n y C3 C2 SYG sing 298 n n C2 C1 SYG sing 299 n n C1 C SYG sing 300 n n C4 H1 SYG sing 301 n n C5 H2 SYG sing 302 n n C6 H3 SYG sing 303 n n C7 H4 SYG sing 304 n n O H5 SYG sing 305 n n C2 H6 SYG sing 306 n n N H7 SYG sing 307 n n N H8 SYG sing 308 n n C1 H10 SYG sing 309 n n C1 H11 SYG sing 310 n n C H12 SYG sing 311 n n C H13 SYG sing 312 n n C H14 SYG sing 313 n n # _atom_sites.entry_id 5R09 _atom_sites.fract_transf_matrix[1][1] 0.011285 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003759 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011231 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SYG B 1 401 401 SYG XXX . D 4 HOH A 1 2101 141 HOH HOH . D 4 HOH A 2 2102 165 HOH HOH . D 4 HOH A 3 2103 170 HOH HOH . D 4 HOH A 4 2104 173 HOH HOH . D 4 HOH A 5 2105 71 HOH HOH . D 4 HOH A 6 2106 8 HOH HOH . D 4 HOH A 7 2107 133 HOH HOH . D 4 HOH A 8 2108 148 HOH HOH . D 4 HOH A 9 2109 3 HOH HOH . D 4 HOH A 10 2110 21 HOH HOH . D 4 HOH A 11 2111 91 HOH HOH . D 4 HOH A 12 2112 111 HOH HOH . D 4 HOH A 13 2113 39 HOH HOH . D 4 HOH A 14 2114 130 HOH HOH . D 4 HOH A 15 2115 112 HOH HOH . D 4 HOH A 16 2116 22 HOH HOH . D 4 HOH A 17 2117 167 HOH HOH . D 4 HOH A 18 2118 128 HOH HOH . D 4 HOH A 19 2119 93 HOH HOH . D 4 HOH A 20 2120 104 HOH HOH . D 4 HOH A 21 2121 129 HOH HOH . D 4 HOH A 22 2122 15 HOH HOH . D 4 HOH A 23 2123 76 HOH HOH . D 4 HOH A 24 2124 2 HOH HOH . D 4 HOH A 25 2125 27 HOH HOH . D 4 HOH A 26 2126 107 HOH HOH . D 4 HOH A 27 2127 13 HOH HOH . D 4 HOH A 28 2128 6 HOH HOH . D 4 HOH A 29 2129 11 HOH HOH . D 4 HOH A 30 2130 25 HOH HOH . D 4 HOH A 31 2131 70 HOH HOH . D 4 HOH A 32 2132 121 HOH HOH . D 4 HOH A 33 2133 9 HOH HOH . D 4 HOH A 34 2134 26 HOH HOH . D 4 HOH A 35 2135 78 HOH HOH . D 4 HOH A 36 2136 134 HOH HOH . D 4 HOH A 37 2137 139 HOH HOH . D 4 HOH A 38 2138 54 HOH HOH . D 4 HOH A 39 2139 118 HOH HOH . D 4 HOH A 40 2140 124 HOH HOH . D 4 HOH A 41 2141 16 HOH HOH . D 4 HOH A 42 2142 132 HOH HOH . D 4 HOH A 43 2143 42 HOH HOH . D 4 HOH A 44 2144 152 HOH HOH . D 4 HOH A 45 2145 84 HOH HOH . D 4 HOH A 46 2146 131 HOH HOH . D 4 HOH A 47 2147 30 HOH HOH . D 4 HOH A 48 2148 28 HOH HOH . D 4 HOH A 49 2149 163 HOH HOH . D 4 HOH A 50 2150 95 HOH HOH . D 4 HOH A 51 2151 41 HOH HOH . D 4 HOH A 52 2152 136 HOH HOH . D 4 HOH A 53 2153 119 HOH HOH . D 4 HOH A 54 2154 4 HOH HOH . D 4 HOH A 55 2155 122 HOH HOH . D 4 HOH A 56 2156 65 HOH HOH . D 4 HOH A 57 2157 5 HOH HOH . D 4 HOH A 58 2158 61 HOH HOH . D 4 HOH A 59 2159 12 HOH HOH . D 4 HOH A 60 2160 73 HOH HOH . D 4 HOH A 61 2161 19 HOH HOH . D 4 HOH A 62 2162 20 HOH HOH . D 4 HOH A 63 2163 116 HOH HOH . D 4 HOH A 64 2164 144 HOH HOH . D 4 HOH A 65 2165 102 HOH HOH . D 4 HOH A 66 2166 169 HOH HOH . D 4 HOH A 67 2167 157 HOH HOH . D 4 HOH A 68 2168 34 HOH HOH . D 4 HOH A 69 2169 92 HOH HOH . D 4 HOH A 70 2170 38 HOH HOH . D 4 HOH A 71 2171 14 HOH HOH . D 4 HOH A 72 2172 62 HOH HOH . D 4 HOH A 73 2173 100 HOH HOH . D 4 HOH A 74 2174 86 HOH HOH . D 4 HOH A 75 2175 149 HOH HOH . D 4 HOH A 76 2176 31 HOH HOH . D 4 HOH A 77 2177 67 HOH HOH . D 4 HOH A 78 2178 49 HOH HOH . D 4 HOH A 79 2179 68 HOH HOH . D 4 HOH A 80 2180 127 HOH HOH . D 4 HOH A 81 2181 63 HOH HOH . D 4 HOH A 82 2182 83 HOH HOH . D 4 HOH A 83 2183 79 HOH HOH . D 4 HOH A 84 2184 155 HOH HOH . D 4 HOH A 85 2185 105 HOH HOH . D 4 HOH A 86 2186 113 HOH HOH . D 4 HOH A 87 2187 29 HOH HOH . D 4 HOH A 88 2188 60 HOH HOH . D 4 HOH A 89 2189 64 HOH HOH . D 4 HOH A 90 2190 151 HOH HOH . D 4 HOH A 91 2191 156 HOH HOH . D 4 HOH A 92 2192 138 HOH HOH . D 4 HOH A 93 2193 142 HOH HOH . D 4 HOH A 94 2194 147 HOH HOH . D 4 HOH A 95 2195 82 HOH HOH . D 4 HOH A 96 2196 88 HOH HOH . D 4 HOH A 97 2197 160 HOH HOH . D 4 HOH A 98 2198 114 HOH HOH . D 4 HOH A 99 2199 101 HOH HOH . D 4 HOH A 100 2200 98 HOH HOH . D 4 HOH A 101 2201 48 HOH HOH . D 4 HOH A 102 2202 110 HOH HOH . E 4 HOH B 1 501 171 HOH HOH . E 4 HOH B 2 502 37 HOH HOH . E 4 HOH B 3 503 81 HOH HOH . E 4 HOH B 4 504 46 HOH HOH . E 4 HOH B 5 505 66 HOH HOH . E 4 HOH B 6 506 69 HOH HOH . E 4 HOH B 7 507 172 HOH HOH . E 4 HOH B 8 508 35 HOH HOH . E 4 HOH B 9 509 135 HOH HOH . E 4 HOH B 10 510 168 HOH HOH . E 4 HOH B 11 511 77 HOH HOH . E 4 HOH B 12 512 17 HOH HOH . E 4 HOH B 13 513 74 HOH HOH . E 4 HOH B 14 514 32 HOH HOH . E 4 HOH B 15 515 87 HOH HOH . E 4 HOH B 16 516 43 HOH HOH . E 4 HOH B 17 517 40 HOH HOH . E 4 HOH B 18 518 55 HOH HOH . E 4 HOH B 19 519 18 HOH HOH . E 4 HOH B 20 520 123 HOH HOH . E 4 HOH B 21 521 146 HOH HOH . E 4 HOH B 22 522 140 HOH HOH . E 4 HOH B 23 523 72 HOH HOH . E 4 HOH B 24 524 24 HOH HOH . E 4 HOH B 25 525 56 HOH HOH . E 4 HOH B 26 526 75 HOH HOH . E 4 HOH B 27 527 103 HOH HOH . E 4 HOH B 28 528 158 HOH HOH . E 4 HOH B 29 529 94 HOH HOH . E 4 HOH B 30 530 58 HOH HOH . E 4 HOH B 31 531 44 HOH HOH . E 4 HOH B 32 532 115 HOH HOH . E 4 HOH B 33 533 51 HOH HOH . E 4 HOH B 34 534 23 HOH HOH . E 4 HOH B 35 535 57 HOH HOH . E 4 HOH B 36 536 10 HOH HOH . E 4 HOH B 37 537 85 HOH HOH . E 4 HOH B 38 538 126 HOH HOH . E 4 HOH B 39 539 150 HOH HOH . E 4 HOH B 40 540 164 HOH HOH . E 4 HOH B 41 541 33 HOH HOH . E 4 HOH B 42 542 96 HOH HOH . E 4 HOH B 43 543 97 HOH HOH . E 4 HOH B 44 544 145 HOH HOH . E 4 HOH B 45 545 52 HOH HOH . E 4 HOH B 46 546 159 HOH HOH . E 4 HOH B 47 547 120 HOH HOH . E 4 HOH B 48 548 117 HOH HOH . E 4 HOH B 49 549 89 HOH HOH . E 4 HOH B 50 550 125 HOH HOH . E 4 HOH B 51 551 45 HOH HOH . E 4 HOH B 52 552 106 HOH HOH . E 4 HOH B 53 553 53 HOH HOH . E 4 HOH B 54 554 36 HOH HOH . E 4 HOH B 55 555 59 HOH HOH . E 4 HOH B 56 556 108 HOH HOH . E 4 HOH B 57 557 90 HOH HOH . E 4 HOH B 58 558 109 HOH HOH . E 4 HOH B 59 559 143 HOH HOH . E 4 HOH B 60 560 80 HOH HOH . E 4 HOH B 61 561 47 HOH HOH . E 4 HOH B 62 562 7 HOH HOH . E 4 HOH B 63 563 166 HOH HOH . E 4 HOH B 64 564 154 HOH HOH . E 4 HOH B 65 565 99 HOH HOH . E 4 HOH B 66 566 137 HOH HOH . E 4 HOH B 67 567 162 HOH HOH . E 4 HOH B 68 568 153 HOH HOH . E 4 HOH B 69 569 161 HOH HOH . E 4 HOH B 70 570 50 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SYG . . . C 3 14.711 25.661 -22.367 0.66 20 ? C4 SYG 401 B 1 HETATM 2 C C5 SYG . . . C 3 15.044 24.693 -23.286 0.66 20 ? C5 SYG 401 B 1 HETATM 3 C C6 SYG . . . C 3 14.081 24.103 -24.047 0.66 20 ? C6 SYG 401 B 1 HETATM 4 C C7 SYG . . . C 3 12.769 24.485 -23.913 0.66 20 ? C7 SYG 401 B 1 HETATM 5 C C8 SYG . . . C 3 12.436 25.509 -23.058 0.66 20 ? C8 SYG 401 B 1 HETATM 6 O O SYG . . . C 3 11.185 26.016 -23.053 0.66 20 ? O SYG 401 B 1 HETATM 7 C C3 SYG . . . C 3 13.408 26.117 -22.272 0.66 20 ? C3 SYG 401 B 1 HETATM 8 C C2 SYG . . . C 3 13.08 27.389 -21.526 0.66 20 ? C2 SYG 401 B 1 HETATM 9 N N SYG . . . C 3 12.79 28.509 -22.47 0.66 20 1 N SYG 401 B 1 HETATM 10 C C1 SYG . . . C 3 11.904 27.105 -20.589 0.66 20 ? C1 SYG 401 B 1 HETATM 11 C C SYG . . . C 3 12.331 26.526 -19.261 0.66 20 ? C SYG 401 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 11 #