data_5R0K # _model_server_result.job_id m4d8WSDeT-4OBWt2P8PStw _model_server_result.datetime_utc '2025-01-10 09:45:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r0k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 5R0K # _exptl.entry_id 5R0K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.253 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description ~{N}-[(~{E})-thiophen-2-ylmethylideneamino]cyclopropanecarboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.67 _cell.angle_gamma 90 _cell.entry_id 5R0K _cell.length_a 88.141 _cell.length_b 82.546 _cell.length_c 92.575 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R0K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H10 N2 O S' _chem_comp.formula_weight 194.253 _chem_comp.id SZ7 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(~{E})-thiophen-2-ylmethylideneamino]cyclopropanecarboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C3 SZ7 doub 290 n y C C1 SZ7 sing 291 n y C3 S SZ7 sing 292 n y C1 C2 SZ7 doub 293 n y S C2 SZ7 sing 294 n y C2 C4 SZ7 sing 295 n n C4 N SZ7 doub 296 e n N N1 SZ7 sing 297 n n N1 C5 SZ7 sing 298 n n C8 C6 SZ7 sing 299 n n C8 C7 SZ7 sing 300 n n C5 C6 SZ7 sing 301 n n C5 O SZ7 doub 302 n n C6 C7 SZ7 sing 303 n n C4 H1 SZ7 sing 304 n n C6 H2 SZ7 sing 305 n n N1 H3 SZ7 sing 306 n n C7 H4 SZ7 sing 307 n n C7 H5 SZ7 sing 308 n n C8 H6 SZ7 sing 309 n n C8 H7 SZ7 sing 310 n n C1 H8 SZ7 sing 311 n n C3 H9 SZ7 sing 312 n n C H10 SZ7 sing 313 n n # _atom_sites.entry_id 5R0K _atom_sites.fract_transf_matrix[1][1] 0.011345 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003614 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011337 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SZ7 B 1 401 401 SZ7 XXX . D 4 HOH A 1 2101 3 HOH HOH . D 4 HOH A 2 2102 50 HOH HOH . D 4 HOH A 3 2103 5 HOH HOH . D 4 HOH A 4 2104 35 HOH HOH . D 4 HOH A 5 2105 58 HOH HOH . D 4 HOH A 6 2106 15 HOH HOH . D 4 HOH A 7 2107 38 HOH HOH . D 4 HOH A 8 2108 2 HOH HOH . D 4 HOH A 9 2109 4 HOH HOH . D 4 HOH A 10 2110 84 HOH HOH . D 4 HOH A 11 2111 30 HOH HOH . D 4 HOH A 12 2112 95 HOH HOH . D 4 HOH A 13 2113 68 HOH HOH . D 4 HOH A 14 2114 76 HOH HOH . D 4 HOH A 15 2115 54 HOH HOH . D 4 HOH A 16 2116 55 HOH HOH . D 4 HOH A 17 2117 51 HOH HOH . D 4 HOH A 18 2118 114 HOH HOH . D 4 HOH A 19 2119 9 HOH HOH . D 4 HOH A 20 2120 24 HOH HOH . D 4 HOH A 21 2121 12 HOH HOH . D 4 HOH A 22 2122 37 HOH HOH . D 4 HOH A 23 2123 106 HOH HOH . D 4 HOH A 24 2124 116 HOH HOH . D 4 HOH A 25 2125 67 HOH HOH . D 4 HOH A 26 2126 56 HOH HOH . D 4 HOH A 27 2127 53 HOH HOH . D 4 HOH A 28 2128 73 HOH HOH . D 4 HOH A 29 2129 23 HOH HOH . D 4 HOH A 30 2130 64 HOH HOH . D 4 HOH A 31 2131 6 HOH HOH . D 4 HOH A 32 2132 14 HOH HOH . D 4 HOH A 33 2133 25 HOH HOH . D 4 HOH A 34 2134 89 HOH HOH . D 4 HOH A 35 2135 7 HOH HOH . D 4 HOH A 36 2136 97 HOH HOH . D 4 HOH A 37 2137 78 HOH HOH . D 4 HOH A 38 2138 8 HOH HOH . D 4 HOH A 39 2139 70 HOH HOH . D 4 HOH A 40 2140 13 HOH HOH . D 4 HOH A 41 2141 45 HOH HOH . D 4 HOH A 42 2142 22 HOH HOH . D 4 HOH A 43 2143 71 HOH HOH . D 4 HOH A 44 2144 28 HOH HOH . D 4 HOH A 45 2145 34 HOH HOH . D 4 HOH A 46 2146 49 HOH HOH . D 4 HOH A 47 2147 19 HOH HOH . D 4 HOH A 48 2148 18 HOH HOH . D 4 HOH A 49 2149 90 HOH HOH . D 4 HOH A 50 2150 75 HOH HOH . D 4 HOH A 51 2151 65 HOH HOH . D 4 HOH A 52 2152 10 HOH HOH . D 4 HOH A 53 2153 83 HOH HOH . D 4 HOH A 54 2154 20 HOH HOH . D 4 HOH A 55 2155 105 HOH HOH . D 4 HOH A 56 2156 60 HOH HOH . D 4 HOH A 57 2157 101 HOH HOH . D 4 HOH A 58 2158 63 HOH HOH . D 4 HOH A 59 2159 111 HOH HOH . D 4 HOH A 60 2160 41 HOH HOH . D 4 HOH A 61 2161 46 HOH HOH . D 4 HOH A 62 2162 44 HOH HOH . D 4 HOH A 63 2163 77 HOH HOH . D 4 HOH A 64 2164 59 HOH HOH . D 4 HOH A 65 2165 80 HOH HOH . D 4 HOH A 66 2166 108 HOH HOH . D 4 HOH A 67 2167 82 HOH HOH . D 4 HOH A 68 2168 69 HOH HOH . D 4 HOH A 69 2169 109 HOH HOH . D 4 HOH A 70 2170 94 HOH HOH . D 4 HOH A 71 2171 96 HOH HOH . D 4 HOH A 72 2172 92 HOH HOH . D 4 HOH A 73 2173 91 HOH HOH . D 4 HOH A 74 2174 107 HOH HOH . D 4 HOH A 75 2175 72 HOH HOH . E 4 HOH B 1 501 115 HOH HOH . E 4 HOH B 2 502 110 HOH HOH . E 4 HOH B 3 503 26 HOH HOH . E 4 HOH B 4 504 52 HOH HOH . E 4 HOH B 5 505 31 HOH HOH . E 4 HOH B 6 506 11 HOH HOH . E 4 HOH B 7 507 81 HOH HOH . E 4 HOH B 8 508 21 HOH HOH . E 4 HOH B 9 509 40 HOH HOH . E 4 HOH B 10 510 88 HOH HOH . E 4 HOH B 11 511 104 HOH HOH . E 4 HOH B 12 512 99 HOH HOH . E 4 HOH B 13 513 43 HOH HOH . E 4 HOH B 14 514 74 HOH HOH . E 4 HOH B 15 515 33 HOH HOH . E 4 HOH B 16 516 27 HOH HOH . E 4 HOH B 17 517 117 HOH HOH . E 4 HOH B 18 518 57 HOH HOH . E 4 HOH B 19 519 103 HOH HOH . E 4 HOH B 20 520 79 HOH HOH . E 4 HOH B 21 521 86 HOH HOH . E 4 HOH B 22 522 48 HOH HOH . E 4 HOH B 23 523 17 HOH HOH . E 4 HOH B 24 524 62 HOH HOH . E 4 HOH B 25 525 102 HOH HOH . E 4 HOH B 26 526 47 HOH HOH . E 4 HOH B 27 527 85 HOH HOH . E 4 HOH B 28 528 16 HOH HOH . E 4 HOH B 29 529 93 HOH HOH . E 4 HOH B 30 530 61 HOH HOH . E 4 HOH B 31 531 66 HOH HOH . E 4 HOH B 32 532 42 HOH HOH . E 4 HOH B 33 533 112 HOH HOH . E 4 HOH B 34 534 32 HOH HOH . E 4 HOH B 35 535 36 HOH HOH . E 4 HOH B 36 536 39 HOH HOH . E 4 HOH B 37 537 119 HOH HOH . E 4 HOH B 38 538 100 HOH HOH . E 4 HOH B 39 539 98 HOH HOH . E 4 HOH B 40 540 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 SZ7 . . . C 3 25.019 16.47 -17.644 0.44 20 ? C4 SZ7 401 B 1 HETATM 2 C C5 SZ7 . . . C 3 25.043 16.516 -14.158 0.44 20 ? C5 SZ7 401 B 1 HETATM 3 C C6 SZ7 . . . C 3 24.235 15.288 -14.013 0.44 20 ? C6 SZ7 401 B 1 HETATM 4 N N1 SZ7 . . . C 3 25.323 16.826 -15.438 0.44 20 ? N1 SZ7 401 B 1 HETATM 5 C C7 SZ7 . . . C 3 24.764 14.211 -13.13 0.44 20 ? C7 SZ7 401 B 1 HETATM 6 C C8 SZ7 . . . C 3 24.808 14.049 -14.578 0.44 20 ? C8 SZ7 401 B 1 HETATM 7 O O SZ7 . . . C 3 25.384 17.187 -13.194 0.44 20 ? O SZ7 401 B 1 HETATM 8 N N SZ7 . . . C 3 24.903 16.004 -16.46 0.44 20 ? N SZ7 401 B 1 HETATM 9 C C2 SZ7 . . . C 3 24.342 15.844 -18.754 0.44 20 ? C2 SZ7 401 B 1 HETATM 10 C C1 SZ7 . . . C 3 23.974 16.432 -19.923 0.44 20 ? C1 SZ7 401 B 1 HETATM 11 S S SZ7 . . . C 3 23.995 14.163 -18.78 0.44 20 ? S SZ7 401 B 1 HETATM 12 C C3 SZ7 . . . C 3 23.405 14.257 -20.32 0.44 20 ? C3 SZ7 401 B 1 HETATM 13 C C SZ7 . . . C 3 23.439 15.506 -20.837 0.44 20 ? C SZ7 401 B 1 # _model_server_stats.io_time_ms 102 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 212 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #