data_5R4J
#
_model_server_result.job_id            kjtB8kLqHdlO12z7TMXEfA 
_model_server_result.datetime_utc      '2024-11-23 08:40:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5r4j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":3003}' 
#
_entry.id    5R4J 
#
_exptl.entry_id    5R4J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              168.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            4-(piperidin-1-yl)-1,2,5-oxadiazol-3-amine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.06 
_cell.angle_gamma         90 
_cell.entry_id            5R4J 
_cell.length_a            112.04 
_cell.length_b            27.43 
_cell.length_c            38.24 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5R4J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H12 N4 O' 
_chem_comp.formula_weight    168.196 
_chem_comp.id                RUY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              4-(piperidin-1-yl)-1,2,5-oxadiazol-3-amine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 RUY sing 286 n n 
C2 C3 RUY sing 287 n n 
C1 C5 RUY sing 288 n n 
C3 N1 RUY sing 289 n n 
C5 C4 RUY sing 290 n n 
C4 N1 RUY sing 291 n n 
N1 C6 RUY sing 292 n n 
N4 C7 RUY sing 293 n n 
C6 C7 RUY sing 294 n y 
C6 N3 RUY doub 295 n y 
C7 N2 RUY doub 296 n y 
N3 O1 RUY sing 297 n y 
N2 O1 RUY sing 298 n y 
C4 H1 RUY sing 299 n n 
C4 H2 RUY sing 300 n n 
C5 H3 RUY sing 301 n n 
C5 H4 RUY sing 302 n n 
C1 H5 RUY sing 303 n n 
C1 H6 RUY sing 304 n n 
C2 H7 RUY sing 305 n n 
C2 H8 RUY sing 306 n n 
C3 H9 RUY sing 307 n n 
C3 H10 RUY sing 308 n n 
N4 H11 RUY sing 309 n n 
N4 H12 RUY sing 310 n n 
#
_atom_sites.entry_id                     5R4J 
_atom_sites.fract_transf_matrix[1][1]    0.008925 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000948 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.036456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DMS A 1 3001 2 DMS DMS . 
C 3 TRS A 1 3002 1 TRS TRS . 
D 4 RUY A 1 3003 1 RUY LIG . 
E 5 HOH A 1 3101 40 HOH HOH . 
E 5 HOH A 2 3102 101 HOH HOH . 
E 5 HOH A 3 3103 117 HOH HOH . 
E 5 HOH A 4 3104 147 HOH HOH . 
E 5 HOH A 5 3105 21 HOH HOH . 
E 5 HOH A 6 3106 128 HOH HOH . 
E 5 HOH A 7 3107 153 HOH HOH . 
E 5 HOH A 8 3108 23 HOH HOH . 
E 5 HOH A 9 3109 80 HOH HOH . 
E 5 HOH A 10 3110 71 HOH HOH . 
E 5 HOH A 11 3111 1 HOH HOH . 
E 5 HOH A 12 3112 53 HOH HOH . 
E 5 HOH A 13 3113 37 HOH HOH . 
E 5 HOH A 14 3114 77 HOH HOH . 
E 5 HOH A 15 3115 98 HOH HOH . 
E 5 HOH A 16 3116 38 HOH HOH . 
E 5 HOH A 17 3117 103 HOH HOH . 
E 5 HOH A 18 3118 170 HOH HOH . 
E 5 HOH A 19 3119 91 HOH HOH . 
E 5 HOH A 20 3120 44 HOH HOH . 
E 5 HOH A 21 3121 92 HOH HOH . 
E 5 HOH A 22 3122 115 HOH HOH . 
E 5 HOH A 23 3123 163 HOH HOH . 
E 5 HOH A 24 3124 166 HOH HOH . 
E 5 HOH A 25 3125 61 HOH HOH . 
E 5 HOH A 26 3126 141 HOH HOH . 
E 5 HOH A 27 3127 145 HOH HOH . 
E 5 HOH A 28 3128 4 HOH HOH . 
E 5 HOH A 29 3129 162 HOH HOH . 
E 5 HOH A 30 3130 33 HOH HOH . 
E 5 HOH A 31 3131 69 HOH HOH . 
E 5 HOH A 32 3132 68 HOH HOH . 
E 5 HOH A 33 3133 19 HOH HOH . 
E 5 HOH A 34 3134 20 HOH HOH . 
E 5 HOH A 35 3135 160 HOH HOH . 
E 5 HOH A 36 3136 12 HOH HOH . 
E 5 HOH A 37 3137 116 HOH HOH . 
E 5 HOH A 38 3138 36 HOH HOH . 
E 5 HOH A 39 3139 18 HOH HOH . 
E 5 HOH A 40 3140 151 HOH HOH . 
E 5 HOH A 41 3141 54 HOH HOH . 
E 5 HOH A 42 3142 106 HOH HOH . 
E 5 HOH A 43 3143 25 HOH HOH . 
E 5 HOH A 44 3144 111 HOH HOH . 
E 5 HOH A 45 3145 26 HOH HOH . 
E 5 HOH A 46 3146 46 HOH HOH . 
E 5 HOH A 47 3147 8 HOH HOH . 
E 5 HOH A 48 3148 39 HOH HOH . 
E 5 HOH A 49 3149 78 HOH HOH . 
E 5 HOH A 50 3150 52 HOH HOH . 
E 5 HOH A 51 3151 118 HOH HOH . 
E 5 HOH A 52 3152 9 HOH HOH . 
E 5 HOH A 53 3153 22 HOH HOH . 
E 5 HOH A 54 3154 135 HOH HOH . 
E 5 HOH A 55 3155 34 HOH HOH . 
E 5 HOH A 56 3156 11 HOH HOH . 
E 5 HOH A 57 3157 104 HOH HOH . 
E 5 HOH A 58 3158 113 HOH HOH . 
E 5 HOH A 59 3159 94 HOH HOH . 
E 5 HOH A 60 3160 16 HOH HOH . 
E 5 HOH A 61 3161 47 HOH HOH . 
E 5 HOH A 62 3162 161 HOH HOH . 
E 5 HOH A 63 3163 131 HOH HOH . 
E 5 HOH A 64 3164 126 HOH HOH . 
E 5 HOH A 65 3165 62 HOH HOH . 
E 5 HOH A 66 3166 59 HOH HOH . 
E 5 HOH A 67 3167 72 HOH HOH . 
E 5 HOH A 68 3168 31 HOH HOH . 
E 5 HOH A 69 3169 65 HOH HOH . 
E 5 HOH A 70 3170 79 HOH HOH . 
E 5 HOH A 71 3171 13 HOH HOH . 
E 5 HOH A 72 3172 150 HOH HOH . 
E 5 HOH A 73 3173 3 HOH HOH . 
E 5 HOH A 74 3174 17 HOH HOH . 
E 5 HOH A 75 3175 95 HOH HOH . 
E 5 HOH A 76 3176 63 HOH HOH . 
E 5 HOH A 77 3177 156 HOH HOH . 
E 5 HOH A 78 3178 50 HOH HOH . 
E 5 HOH A 79 3179 86 HOH HOH . 
E 5 HOH A 80 3180 48 HOH HOH . 
E 5 HOH A 81 3181 45 HOH HOH . 
E 5 HOH A 82 3182 24 HOH HOH . 
E 5 HOH A 83 3183 29 HOH HOH . 
E 5 HOH A 84 3184 82 HOH HOH . 
E 5 HOH A 85 3185 81 HOH HOH . 
E 5 HOH A 86 3186 134 HOH HOH . 
E 5 HOH A 87 3187 146 HOH HOH . 
E 5 HOH A 88 3188 149 HOH HOH . 
E 5 HOH A 89 3189 42 HOH HOH . 
E 5 HOH A 90 3190 51 HOH HOH . 
E 5 HOH A 91 3191 5 HOH HOH . 
E 5 HOH A 92 3192 27 HOH HOH . 
E 5 HOH A 93 3193 64 HOH HOH . 
E 5 HOH A 94 3194 6 HOH HOH . 
E 5 HOH A 95 3195 102 HOH HOH . 
E 5 HOH A 96 3196 133 HOH HOH . 
E 5 HOH A 97 3197 124 HOH HOH . 
E 5 HOH A 98 3198 90 HOH HOH . 
E 5 HOH A 99 3199 148 HOH HOH . 
E 5 HOH A 100 3200 96 HOH HOH . 
E 5 HOH A 101 3201 15 HOH HOH . 
E 5 HOH A 102 3202 73 HOH HOH . 
E 5 HOH A 103 3203 60 HOH HOH . 
E 5 HOH A 104 3204 32 HOH HOH . 
E 5 HOH A 105 3205 89 HOH HOH . 
E 5 HOH A 106 3206 109 HOH HOH . 
E 5 HOH A 107 3207 14 HOH HOH . 
E 5 HOH A 108 3208 122 HOH HOH . 
E 5 HOH A 109 3209 171 HOH HOH . 
E 5 HOH A 110 3210 130 HOH HOH . 
E 5 HOH A 111 3211 43 HOH HOH . 
E 5 HOH A 112 3212 108 HOH HOH . 
E 5 HOH A 113 3213 155 HOH HOH . 
E 5 HOH A 114 3214 2 HOH HOH . 
E 5 HOH A 115 3215 35 HOH HOH . 
E 5 HOH A 116 3216 112 HOH HOH . 
E 5 HOH A 117 3217 49 HOH HOH . 
E 5 HOH A 118 3218 7 HOH HOH . 
E 5 HOH A 119 3219 67 HOH HOH . 
E 5 HOH A 120 3220 144 HOH HOH . 
E 5 HOH A 121 3221 107 HOH HOH . 
E 5 HOH A 122 3222 83 HOH HOH . 
E 5 HOH A 123 3223 125 HOH HOH . 
E 5 HOH A 124 3224 30 HOH HOH . 
E 5 HOH A 125 3225 114 HOH HOH . 
E 5 HOH A 126 3226 87 HOH HOH . 
E 5 HOH A 127 3227 168 HOH HOH . 
E 5 HOH A 128 3228 66 HOH HOH . 
E 5 HOH A 129 3229 76 HOH HOH . 
E 5 HOH A 130 3230 70 HOH HOH . 
E 5 HOH A 131 3231 100 HOH HOH . 
E 5 HOH A 132 3232 10 HOH HOH . 
E 5 HOH A 133 3233 97 HOH HOH . 
E 5 HOH A 134 3234 57 HOH HOH . 
E 5 HOH A 135 3235 88 HOH HOH . 
E 5 HOH A 136 3236 165 HOH HOH . 
E 5 HOH A 137 3237 129 HOH HOH . 
E 5 HOH A 138 3238 167 HOH HOH . 
E 5 HOH A 139 3239 75 HOH HOH . 
E 5 HOH A 140 3240 138 HOH HOH . 
E 5 HOH A 141 3241 28 HOH HOH . 
E 5 HOH A 142 3242 136 HOH HOH . 
E 5 HOH A 143 3243 132 HOH HOH . 
E 5 HOH A 144 3244 56 HOH HOH . 
E 5 HOH A 145 3245 85 HOH HOH . 
E 5 HOH A 146 3246 157 HOH HOH . 
E 5 HOH A 147 3247 169 HOH HOH . 
E 5 HOH A 148 3248 58 HOH HOH . 
E 5 HOH A 149 3249 152 HOH HOH . 
E 5 HOH A 150 3250 139 HOH HOH . 
E 5 HOH A 151 3251 140 HOH HOH . 
E 5 HOH A 152 3252 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 RUY . . . D 4 -7.823 6.34 -10.598 0.56 26.27 ? N1 RUY 3003 A 1 
HETATM 2 N N3 RUY . . . D 4 -7.256 7.887 -8.885 0.56 25.11 ? N3 RUY 3003 A 1 
HETATM 3 C C4 RUY . . . D 4 -6.503 5.696 -10.615 0.56 26.43 ? C4 RUY 3003 A 1 
HETATM 4 C C5 RUY . . . D 4 -6.537 4.385 -11.377 0.56 26.93 ? C5 RUY 3003 A 1 
HETATM 5 C C6 RUY . . . D 4 -8.139 7.279 -9.629 0.56 25.25 ? C6 RUY 3003 A 1 
HETATM 6 C C7 RUY . . . D 4 -9.445 7.751 -9.246 0.56 24.63 ? C7 RUY 3003 A 1 
HETATM 7 C C1 RUY . . . D 4 -6.919 4.602 -12.832 0.56 26.97 ? C1 RUY 3003 A 1 
HETATM 8 C C2 RUY . . . D 4 -7.984 5.678 -12.966 0.56 26.88 ? C2 RUY 3003 A 1 
HETATM 9 C C3 RUY . . . D 4 -8.732 5.897 -11.664 0.56 26.81 ? C3 RUY 3003 A 1 
HETATM 10 N N2 RUY . . . D 4 -9.314 8.628 -8.29 0.56 24.42 ? N2 RUY 3003 A 1 
HETATM 11 N N4 RUY . . . D 4 -10.652 7.385 -9.761 0.56 24.5 ? N4 RUY 3003 A 1 
HETATM 12 O O1 RUY . . . D 4 -7.962 8.735 -8.043 0.56 24.06 ? O1 RUY 3003 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           311 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           12 
#