data_5R4K # _model_server_result.job_id AKLiMlNoJzYSfwMu-_EwXQ _model_server_result.datetime_utc '2024-11-13 05:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":3001}' # _entry.id 5R4K # _exptl.entry_id 5R4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.8 _cell.angle_gamma 90 _cell.entry_id 5R4K _cell.length_a 111.54 _cell.length_b 27.371 _cell.length_c 38.1 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R4K _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5R4K _atom_sites.fract_transf_matrix[1][1] 0.008965 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.036535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026382 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 3001 2 DMS DMS . C 3 TRS A 1 3002 1 TRS TRS . D 4 K0V A 1 3003 1 K0V LIG . E 5 HOH A 1 3101 40 HOH HOH . E 5 HOH A 2 3102 128 HOH HOH . E 5 HOH A 3 3103 147 HOH HOH . E 5 HOH A 4 3104 101 HOH HOH . E 5 HOH A 5 3105 34 HOH HOH . E 5 HOH A 6 3106 37 HOH HOH . E 5 HOH A 7 3107 21 HOH HOH . E 5 HOH A 8 3108 23 HOH HOH . E 5 HOH A 9 3109 44 HOH HOH . E 5 HOH A 10 3110 33 HOH HOH . E 5 HOH A 11 3111 153 HOH HOH . E 5 HOH A 12 3112 1 HOH HOH . E 5 HOH A 13 3113 103 HOH HOH . E 5 HOH A 14 3114 91 HOH HOH . E 5 HOH A 15 3115 68 HOH HOH . E 5 HOH A 16 3116 61 HOH HOH . E 5 HOH A 17 3117 98 HOH HOH . E 5 HOH A 18 3118 52 HOH HOH . E 5 HOH A 19 3119 117 HOH HOH . E 5 HOH A 20 3120 25 HOH HOH . E 5 HOH A 21 3121 166 HOH HOH . E 5 HOH A 22 3122 18 HOH HOH . E 5 HOH A 23 3123 118 HOH HOH . E 5 HOH A 24 3124 83 HOH HOH . E 5 HOH A 25 3125 53 HOH HOH . E 5 HOH A 26 3126 145 HOH HOH . E 5 HOH A 27 3127 19 HOH HOH . E 5 HOH A 28 3128 66 HOH HOH . E 5 HOH A 29 3129 124 HOH HOH . E 5 HOH A 30 3130 8 HOH HOH . E 5 HOH A 31 3131 54 HOH HOH . E 5 HOH A 32 3132 92 HOH HOH . E 5 HOH A 33 3133 20 HOH HOH . E 5 HOH A 34 3134 162 HOH HOH . E 5 HOH A 35 3135 96 HOH HOH . E 5 HOH A 36 3136 163 HOH HOH . E 5 HOH A 37 3137 77 HOH HOH . E 5 HOH A 38 3138 126 HOH HOH . E 5 HOH A 39 3139 80 HOH HOH . E 5 HOH A 40 3140 69 HOH HOH . E 5 HOH A 41 3141 12 HOH HOH . E 5 HOH A 42 3142 122 HOH HOH . E 5 HOH A 43 3143 72 HOH HOH . E 5 HOH A 44 3144 115 HOH HOH . E 5 HOH A 45 3145 131 HOH HOH . E 5 HOH A 46 3146 141 HOH HOH . E 5 HOH A 47 3147 78 HOH HOH . E 5 HOH A 48 3148 4 HOH HOH . E 5 HOH A 49 3149 104 HOH HOH . E 5 HOH A 50 3150 39 HOH HOH . E 5 HOH A 51 3151 11 HOH HOH . E 5 HOH A 52 3152 46 HOH HOH . E 5 HOH A 53 3153 65 HOH HOH . E 5 HOH A 54 3154 26 HOH HOH . E 5 HOH A 55 3155 135 HOH HOH . E 5 HOH A 56 3156 36 HOH HOH . E 5 HOH A 57 3157 146 HOH HOH . E 5 HOH A 58 3158 95 HOH HOH . E 5 HOH A 59 3159 59 HOH HOH . E 5 HOH A 60 3160 50 HOH HOH . E 5 HOH A 61 3161 64 HOH HOH . E 5 HOH A 62 3162 94 HOH HOH . E 5 HOH A 63 3163 38 HOH HOH . E 5 HOH A 64 3164 17 HOH HOH . E 5 HOH A 65 3165 45 HOH HOH . E 5 HOH A 66 3166 116 HOH HOH . E 5 HOH A 67 3167 16 HOH HOH . E 5 HOH A 68 3168 24 HOH HOH . E 5 HOH A 69 3169 113 HOH HOH . E 5 HOH A 70 3170 150 HOH HOH . E 5 HOH A 71 3171 102 HOH HOH . E 5 HOH A 72 3172 82 HOH HOH . E 5 HOH A 73 3173 22 HOH HOH . E 5 HOH A 74 3174 111 HOH HOH . E 5 HOH A 75 3175 42 HOH HOH . E 5 HOH A 76 3176 133 HOH HOH . E 5 HOH A 77 3177 79 HOH HOH . E 5 HOH A 78 3178 81 HOH HOH . E 5 HOH A 79 3179 62 HOH HOH . E 5 HOH A 80 3180 106 HOH HOH . E 5 HOH A 81 3181 3 HOH HOH . E 5 HOH A 82 3182 170 HOH HOH . E 5 HOH A 83 3183 27 HOH HOH . E 5 HOH A 84 3184 13 HOH HOH . E 5 HOH A 85 3185 156 HOH HOH . E 5 HOH A 86 3186 47 HOH HOH . E 5 HOH A 87 3187 29 HOH HOH . E 5 HOH A 88 3188 48 HOH HOH . E 5 HOH A 89 3189 9 HOH HOH . E 5 HOH A 90 3190 63 HOH HOH . E 5 HOH A 91 3191 120 HOH HOH . E 5 HOH A 92 3192 31 HOH HOH . E 5 HOH A 93 3193 32 HOH HOH . E 5 HOH A 94 3194 6 HOH HOH . E 5 HOH A 95 3195 86 HOH HOH . E 5 HOH A 96 3196 5 HOH HOH . E 5 HOH A 97 3197 71 HOH HOH . E 5 HOH A 98 3198 51 HOH HOH . E 5 HOH A 99 3199 149 HOH HOH . E 5 HOH A 100 3200 15 HOH HOH . E 5 HOH A 101 3201 125 HOH HOH . E 5 HOH A 102 3202 14 HOH HOH . E 5 HOH A 103 3203 148 HOH HOH . E 5 HOH A 104 3204 142 HOH HOH . E 5 HOH A 105 3205 171 HOH HOH . E 5 HOH A 106 3206 73 HOH HOH . E 5 HOH A 107 3207 2 HOH HOH . E 5 HOH A 108 3208 89 HOH HOH . E 5 HOH A 109 3209 43 HOH HOH . E 5 HOH A 110 3210 155 HOH HOH . E 5 HOH A 111 3211 112 HOH HOH . E 5 HOH A 112 3212 67 HOH HOH . E 5 HOH A 113 3213 108 HOH HOH . E 5 HOH A 114 3214 7 HOH HOH . E 5 HOH A 115 3215 109 HOH HOH . E 5 HOH A 116 3216 161 HOH HOH . E 5 HOH A 117 3217 151 HOH HOH . E 5 HOH A 118 3218 35 HOH HOH . E 5 HOH A 119 3219 134 HOH HOH . E 5 HOH A 120 3220 130 HOH HOH . E 5 HOH A 121 3221 160 HOH HOH . E 5 HOH A 122 3222 90 HOH HOH . E 5 HOH A 123 3223 49 HOH HOH . E 5 HOH A 124 3224 87 HOH HOH . E 5 HOH A 125 3225 114 HOH HOH . E 5 HOH A 126 3226 100 HOH HOH . E 5 HOH A 127 3227 30 HOH HOH . E 5 HOH A 128 3228 168 HOH HOH . E 5 HOH A 129 3229 76 HOH HOH . E 5 HOH A 130 3230 157 HOH HOH . E 5 HOH A 131 3231 70 HOH HOH . E 5 HOH A 132 3232 165 HOH HOH . E 5 HOH A 133 3233 60 HOH HOH . E 5 HOH A 134 3234 10 HOH HOH . E 5 HOH A 135 3235 97 HOH HOH . E 5 HOH A 136 3236 57 HOH HOH . E 5 HOH A 137 3237 88 HOH HOH . E 5 HOH A 138 3238 129 HOH HOH . E 5 HOH A 139 3239 138 HOH HOH . E 5 HOH A 140 3240 75 HOH HOH . E 5 HOH A 141 3241 144 HOH HOH . E 5 HOH A 142 3242 136 HOH HOH . E 5 HOH A 143 3243 56 HOH HOH . E 5 HOH A 144 3244 107 HOH HOH . E 5 HOH A 145 3245 152 HOH HOH . E 5 HOH A 146 3246 132 HOH HOH . E 5 HOH A 147 3247 58 HOH HOH . E 5 HOH A 148 3248 167 HOH HOH . E 5 HOH A 149 3249 169 HOH HOH . E 5 HOH A 150 3250 28 HOH HOH . E 5 HOH A 151 3251 85 HOH HOH . E 5 HOH A 152 3252 139 HOH HOH . E 5 HOH A 153 3253 140 HOH HOH . E 5 HOH A 154 3254 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -21.187 16.327 -10.309 1 42.9 ? S DMS 3001 A 1 HETATM 2 O O DMS . . . B 2 -22.493 15.657 -10.518 1 44.11 ? O DMS 3001 A 1 HETATM 3 C C1 DMS . . . B 2 -19.951 15.147 -10.242 1 42.38 ? C1 DMS 3001 A 1 HETATM 4 C C2 DMS . . . B 2 -20.817 17.206 -11.726 1 42.78 ? C2 DMS 3001 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #