data_5R4U # _model_server_result.job_id ny4ngWHyhHE4FaQ3XBeqBg _model_server_result.datetime_utc '2024-12-04 05:35:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r4u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 5R4U # _exptl.entry_id 5R4U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5R4U _cell.length_a 59.06 _cell.length_b 59.06 _cell.length_c 212.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R4U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1,2 B,H,I,J,K,L,N 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 6_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -70.9 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 58 A GLU 88 1_555 I ZN ZN . B ZN 302 4_655 ? B ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc2 A NE2 HIS 59 A HIS 89 1_555 H ZN ZN . B ZN 301 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc3 A NE2 HIS 63 A HIS 93 1_555 I ZN ZN . B ZN 302 4_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc4 M O HOH . A HOH 402 4_545 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc5 M O HOH . A HOH 405 4_545 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc6 B OE1 GLU 58 B GLU 88 1_555 H ZN ZN . B ZN 301 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc7 B NE2 HIS 63 B HIS 93 1_555 H ZN ZN . B ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc8 B NE2 HIS 134 B HIS 164 1_555 I ZN ZN . B ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.733 ? metalc ? metalc9 H ZN ZN . B ZN 301 1_555 N O HOH . B HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? metalc ? metalc10 H ZN ZN . B ZN 301 1_555 N O HOH . B HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc11 I ZN ZN . B ZN 302 1_555 N O HOH . B HOH 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5R4U _atom_sites.fract_transf_matrix[1][1] 0.016932 _atom_sites.fract_transf_matrix[1][2] 0.009776 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004701 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RWM A 1 301 301 RWM LIG . D 3 ZN A 1 302 4 ZN ZN . E 3 ZN A 1 303 6 ZN ZN . F 4 ACT A 1 304 1 ACT ACT . G 4 ACT A 1 305 2 ACT ACT . H 3 ZN B 1 301 1 ZN ZN . I 3 ZN B 1 302 2 ZN ZN . J 3 ZN B 1 303 3 ZN ZN . K 3 ZN B 1 304 5 ZN ZN . L 4 ACT B 1 305 3 ACT ACT . M 5 HOH A 1 401 99 HOH HOH . M 5 HOH A 2 402 173 HOH HOH . M 5 HOH A 3 403 197 HOH HOH . M 5 HOH A 4 404 268 HOH HOH . M 5 HOH A 5 405 241 HOH HOH . M 5 HOH A 6 406 146 HOH HOH . M 5 HOH A 7 407 137 HOH HOH . M 5 HOH A 8 408 34 HOH HOH . M 5 HOH A 9 409 40 HOH HOH . M 5 HOH A 10 410 156 HOH HOH . M 5 HOH A 11 411 140 HOH HOH . M 5 HOH A 12 412 42 HOH HOH . M 5 HOH A 13 413 64 HOH HOH . M 5 HOH A 14 414 45 HOH HOH . M 5 HOH A 15 415 90 HOH HOH . M 5 HOH A 16 416 239 HOH HOH . M 5 HOH A 17 417 89 HOH HOH . M 5 HOH A 18 418 46 HOH HOH . M 5 HOH A 19 419 18 HOH HOH . M 5 HOH A 20 420 207 HOH HOH . M 5 HOH A 21 421 41 HOH HOH . M 5 HOH A 22 422 155 HOH HOH . M 5 HOH A 23 423 44 HOH HOH . M 5 HOH A 24 424 165 HOH HOH . M 5 HOH A 25 425 235 HOH HOH . M 5 HOH A 26 426 31 HOH HOH . M 5 HOH A 27 427 136 HOH HOH . M 5 HOH A 28 428 167 HOH HOH . M 5 HOH A 29 429 232 HOH HOH . M 5 HOH A 30 430 121 HOH HOH . M 5 HOH A 31 431 110 HOH HOH . M 5 HOH A 32 432 20 HOH HOH . M 5 HOH A 33 433 210 HOH HOH . M 5 HOH A 34 434 30 HOH HOH . M 5 HOH A 35 435 22 HOH HOH . M 5 HOH A 36 436 255 HOH HOH . M 5 HOH A 37 437 32 HOH HOH . M 5 HOH A 38 438 134 HOH HOH . M 5 HOH A 39 439 57 HOH HOH . M 5 HOH A 40 440 102 HOH HOH . M 5 HOH A 41 441 269 HOH HOH . M 5 HOH A 42 442 43 HOH HOH . M 5 HOH A 43 443 23 HOH HOH . M 5 HOH A 44 444 69 HOH HOH . M 5 HOH A 45 445 4 HOH HOH . M 5 HOH A 46 446 91 HOH HOH . M 5 HOH A 47 447 12 HOH HOH . M 5 HOH A 48 448 223 HOH HOH . M 5 HOH A 49 449 54 HOH HOH . M 5 HOH A 50 450 109 HOH HOH . M 5 HOH A 51 451 38 HOH HOH . M 5 HOH A 52 452 201 HOH HOH . M 5 HOH A 53 453 15 HOH HOH . M 5 HOH A 54 454 11 HOH HOH . M 5 HOH A 55 455 81 HOH HOH . M 5 HOH A 56 456 124 HOH HOH . M 5 HOH A 57 457 86 HOH HOH . M 5 HOH A 58 458 59 HOH HOH . M 5 HOH A 59 459 111 HOH HOH . M 5 HOH A 60 460 129 HOH HOH . M 5 HOH A 61 461 17 HOH HOH . M 5 HOH A 62 462 60 HOH HOH . M 5 HOH A 63 463 8 HOH HOH . M 5 HOH A 64 464 78 HOH HOH . M 5 HOH A 65 465 126 HOH HOH . M 5 HOH A 66 466 254 HOH HOH . M 5 HOH A 67 467 219 HOH HOH . M 5 HOH A 68 468 222 HOH HOH . M 5 HOH A 69 469 122 HOH HOH . M 5 HOH A 70 470 58 HOH HOH . M 5 HOH A 71 471 84 HOH HOH . M 5 HOH A 72 472 131 HOH HOH . M 5 HOH A 73 473 72 HOH HOH . M 5 HOH A 74 474 208 HOH HOH . M 5 HOH A 75 475 79 HOH HOH . M 5 HOH A 76 476 158 HOH HOH . M 5 HOH A 77 477 88 HOH HOH . M 5 HOH A 78 478 16 HOH HOH . M 5 HOH A 79 479 6 HOH HOH . M 5 HOH A 80 480 138 HOH HOH . M 5 HOH A 81 481 53 HOH HOH . M 5 HOH A 82 482 130 HOH HOH . M 5 HOH A 83 483 2 HOH HOH . M 5 HOH A 84 484 149 HOH HOH . M 5 HOH A 85 485 148 HOH HOH . M 5 HOH A 86 486 142 HOH HOH . M 5 HOH A 87 487 202 HOH HOH . M 5 HOH A 88 488 3 HOH HOH . M 5 HOH A 89 489 162 HOH HOH . M 5 HOH A 90 490 108 HOH HOH . M 5 HOH A 91 491 36 HOH HOH . M 5 HOH A 92 492 187 HOH HOH . M 5 HOH A 93 493 10 HOH HOH . M 5 HOH A 94 494 185 HOH HOH . M 5 HOH A 95 495 117 HOH HOH . M 5 HOH A 96 496 166 HOH HOH . M 5 HOH A 97 497 76 HOH HOH . M 5 HOH A 98 498 13 HOH HOH . M 5 HOH A 99 499 115 HOH HOH . M 5 HOH A 100 500 174 HOH HOH . M 5 HOH A 101 501 51 HOH HOH . M 5 HOH A 102 502 50 HOH HOH . M 5 HOH A 103 503 246 HOH HOH . M 5 HOH A 104 504 179 HOH HOH . M 5 HOH A 105 505 157 HOH HOH . M 5 HOH A 106 506 262 HOH HOH . M 5 HOH A 107 507 145 HOH HOH . M 5 HOH A 108 508 198 HOH HOH . M 5 HOH A 109 509 175 HOH HOH . M 5 HOH A 110 510 172 HOH HOH . M 5 HOH A 111 511 73 HOH HOH . M 5 HOH A 112 512 144 HOH HOH . M 5 HOH A 113 513 114 HOH HOH . M 5 HOH A 114 514 184 HOH HOH . M 5 HOH A 115 515 183 HOH HOH . M 5 HOH A 116 516 263 HOH HOH . M 5 HOH A 117 517 238 HOH HOH . M 5 HOH A 118 518 252 HOH HOH . M 5 HOH A 119 519 70 HOH HOH . M 5 HOH A 120 520 213 HOH HOH . M 5 HOH A 121 521 206 HOH HOH . M 5 HOH A 122 522 203 HOH HOH . M 5 HOH A 123 523 189 HOH HOH . M 5 HOH A 124 524 194 HOH HOH . M 5 HOH A 125 525 227 HOH HOH . M 5 HOH A 126 526 237 HOH HOH . M 5 HOH A 127 527 205 HOH HOH . N 5 HOH B 1 401 200 HOH HOH . N 5 HOH B 2 402 152 HOH HOH . N 5 HOH B 3 403 85 HOH HOH . N 5 HOH B 4 404 195 HOH HOH . N 5 HOH B 5 405 228 HOH HOH . N 5 HOH B 6 406 100 HOH HOH . N 5 HOH B 7 407 244 HOH HOH . N 5 HOH B 8 408 153 HOH HOH . N 5 HOH B 9 409 180 HOH HOH . N 5 HOH B 10 410 116 HOH HOH . N 5 HOH B 11 411 247 HOH HOH . N 5 HOH B 12 412 87 HOH HOH . N 5 HOH B 13 413 143 HOH HOH . N 5 HOH B 14 414 225 HOH HOH . N 5 HOH B 15 415 55 HOH HOH . N 5 HOH B 16 416 141 HOH HOH . N 5 HOH B 17 417 125 HOH HOH . N 5 HOH B 18 418 215 HOH HOH . N 5 HOH B 19 419 176 HOH HOH . N 5 HOH B 20 420 118 HOH HOH . N 5 HOH B 21 421 5 HOH HOH . N 5 HOH B 22 422 135 HOH HOH . N 5 HOH B 23 423 27 HOH HOH . N 5 HOH B 24 424 104 HOH HOH . N 5 HOH B 25 425 161 HOH HOH . N 5 HOH B 26 426 74 HOH HOH . N 5 HOH B 27 427 1 HOH HOH . N 5 HOH B 28 428 112 HOH HOH . N 5 HOH B 29 429 82 HOH HOH . N 5 HOH B 30 430 139 HOH HOH . N 5 HOH B 31 431 258 HOH HOH . N 5 HOH B 32 432 35 HOH HOH . N 5 HOH B 33 433 28 HOH HOH . N 5 HOH B 34 434 26 HOH HOH . N 5 HOH B 35 435 19 HOH HOH . N 5 HOH B 36 436 196 HOH HOH . N 5 HOH B 37 437 7 HOH HOH . N 5 HOH B 38 438 52 HOH HOH . N 5 HOH B 39 439 150 HOH HOH . N 5 HOH B 40 440 25 HOH HOH . N 5 HOH B 41 441 77 HOH HOH . N 5 HOH B 42 442 83 HOH HOH . N 5 HOH B 43 443 56 HOH HOH . N 5 HOH B 44 444 48 HOH HOH . N 5 HOH B 45 445 75 HOH HOH . N 5 HOH B 46 446 147 HOH HOH . N 5 HOH B 47 447 191 HOH HOH . N 5 HOH B 48 448 68 HOH HOH . N 5 HOH B 49 449 80 HOH HOH . N 5 HOH B 50 450 151 HOH HOH . N 5 HOH B 51 451 67 HOH HOH . N 5 HOH B 52 452 94 HOH HOH . N 5 HOH B 53 453 226 HOH HOH . N 5 HOH B 54 454 92 HOH HOH . N 5 HOH B 55 455 97 HOH HOH . N 5 HOH B 56 456 29 HOH HOH . N 5 HOH B 57 457 9 HOH HOH . N 5 HOH B 58 458 33 HOH HOH . N 5 HOH B 59 459 127 HOH HOH . N 5 HOH B 60 460 66 HOH HOH . N 5 HOH B 61 461 253 HOH HOH . N 5 HOH B 62 462 240 HOH HOH . N 5 HOH B 63 463 103 HOH HOH . N 5 HOH B 64 464 49 HOH HOH . N 5 HOH B 65 465 256 HOH HOH . N 5 HOH B 66 466 119 HOH HOH . N 5 HOH B 67 467 98 HOH HOH . N 5 HOH B 68 468 107 HOH HOH . N 5 HOH B 69 469 65 HOH HOH . N 5 HOH B 70 470 123 HOH HOH . N 5 HOH B 71 471 190 HOH HOH . N 5 HOH B 72 472 177 HOH HOH . N 5 HOH B 73 473 39 HOH HOH . N 5 HOH B 74 474 267 HOH HOH . N 5 HOH B 75 475 21 HOH HOH . N 5 HOH B 76 476 261 HOH HOH . N 5 HOH B 77 477 245 HOH HOH . N 5 HOH B 78 478 234 HOH HOH . N 5 HOH B 79 479 217 HOH HOH . N 5 HOH B 80 480 93 HOH HOH . N 5 HOH B 81 481 63 HOH HOH . N 5 HOH B 82 482 47 HOH HOH . N 5 HOH B 83 483 211 HOH HOH . N 5 HOH B 84 484 113 HOH HOH . N 5 HOH B 85 485 233 HOH HOH . N 5 HOH B 86 486 236 HOH HOH . N 5 HOH B 87 487 61 HOH HOH . N 5 HOH B 88 488 171 HOH HOH . N 5 HOH B 89 489 178 HOH HOH . N 5 HOH B 90 490 163 HOH HOH . N 5 HOH B 91 491 14 HOH HOH . N 5 HOH B 92 492 120 HOH HOH . N 5 HOH B 93 493 259 HOH HOH . N 5 HOH B 94 494 266 HOH HOH . N 5 HOH B 95 495 96 HOH HOH . N 5 HOH B 96 496 159 HOH HOH . N 5 HOH B 97 497 95 HOH HOH . N 5 HOH B 98 498 218 HOH HOH . N 5 HOH B 99 499 182 HOH HOH . N 5 HOH B 100 500 224 HOH HOH . N 5 HOH B 101 501 212 HOH HOH . N 5 HOH B 102 502 186 HOH HOH . N 5 HOH B 103 503 229 HOH HOH . N 5 HOH B 104 504 265 HOH HOH . N 5 HOH B 105 505 181 HOH HOH . N 5 HOH B 106 506 128 HOH HOH . N 5 HOH B 107 507 242 HOH HOH . N 5 HOH B 108 508 220 HOH HOH . N 5 HOH B 109 509 133 HOH HOH . N 5 HOH B 110 510 221 HOH HOH . N 5 HOH B 111 511 154 HOH HOH . N 5 HOH B 112 512 260 HOH HOH . N 5 HOH B 113 513 230 HOH HOH . N 5 HOH B 114 514 250 HOH HOH . N 5 HOH B 115 515 248 HOH HOH . N 5 HOH B 116 516 168 HOH HOH . N 5 HOH B 117 517 193 HOH HOH . N 5 HOH B 118 518 257 HOH HOH . N 5 HOH B 119 519 251 HOH HOH . N 5 HOH B 120 520 37 HOH HOH . N 5 HOH B 121 521 204 HOH HOH . N 5 HOH B 122 522 199 HOH HOH . N 5 HOH B 123 523 62 HOH HOH . N 5 HOH B 124 524 249 HOH HOH . N 5 HOH B 125 525 216 HOH HOH . N 5 HOH B 126 526 264 HOH HOH . N 5 HOH B 127 527 105 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -2.386 _atom_site.Cartn_y -5.86 _atom_site.Cartn_z -17.5 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 161.08 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 33 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 526 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #