data_5R4X # _model_server_result.job_id ber-MRJsWfUcc-QVGVOtgw _model_server_result.datetime_utc '2024-11-04 23:21:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1207}' # _entry.id 5R4X # _exptl.entry_id 5R4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5R4X _cell.length_a 80.79 _cell.length_b 80.79 _cell.length_c 140.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 5R4X _atom_sites.fract_transf_matrix[1][1] 0.012378 _atom_sites.fract_transf_matrix[1][2] 0.007146 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014293 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K3D A 1 1201 1201 K3D LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 4 EDO A 1 1204 3 EDO EDO . F 4 EDO A 1 1205 5 EDO EDO . G 4 EDO A 1 1206 6 EDO EDO . H 4 EDO A 1 1207 7 EDO EDO . I 5 HOH A 1 1301 273 HOH HOH . I 5 HOH A 2 1302 158 HOH HOH . I 5 HOH A 3 1303 34 HOH HOH . I 5 HOH A 4 1304 134 HOH HOH . I 5 HOH A 5 1305 111 HOH HOH . I 5 HOH A 6 1306 144 HOH HOH . I 5 HOH A 7 1307 132 HOH HOH . I 5 HOH A 8 1308 128 HOH HOH . I 5 HOH A 9 1309 142 HOH HOH . I 5 HOH A 10 1310 106 HOH HOH . I 5 HOH A 11 1311 27 HOH HOH . I 5 HOH A 12 1312 59 HOH HOH . I 5 HOH A 13 1313 191 HOH HOH . I 5 HOH A 14 1314 163 HOH HOH . I 5 HOH A 15 1315 274 HOH HOH . I 5 HOH A 16 1316 5 HOH HOH . I 5 HOH A 17 1317 197 HOH HOH . I 5 HOH A 18 1318 87 HOH HOH . I 5 HOH A 19 1319 113 HOH HOH . I 5 HOH A 20 1320 271 HOH HOH . I 5 HOH A 21 1321 165 HOH HOH . I 5 HOH A 22 1322 98 HOH HOH . I 5 HOH A 23 1323 68 HOH HOH . I 5 HOH A 24 1324 16 HOH HOH . I 5 HOH A 25 1325 43 HOH HOH . I 5 HOH A 26 1326 161 HOH HOH . I 5 HOH A 27 1327 77 HOH HOH . I 5 HOH A 28 1328 50 HOH HOH . I 5 HOH A 29 1329 20 HOH HOH . I 5 HOH A 30 1330 28 HOH HOH . I 5 HOH A 31 1331 129 HOH HOH . I 5 HOH A 32 1332 107 HOH HOH . I 5 HOH A 33 1333 171 HOH HOH . I 5 HOH A 34 1334 80 HOH HOH . I 5 HOH A 35 1335 13 HOH HOH . I 5 HOH A 36 1336 32 HOH HOH . I 5 HOH A 37 1337 162 HOH HOH . I 5 HOH A 38 1338 46 HOH HOH . I 5 HOH A 39 1339 23 HOH HOH . I 5 HOH A 40 1340 99 HOH HOH . I 5 HOH A 41 1341 9 HOH HOH . I 5 HOH A 42 1342 75 HOH HOH . I 5 HOH A 43 1343 25 HOH HOH . I 5 HOH A 44 1344 21 HOH HOH . I 5 HOH A 45 1345 2 HOH HOH . I 5 HOH A 46 1346 19 HOH HOH . I 5 HOH A 47 1347 92 HOH HOH . I 5 HOH A 48 1348 118 HOH HOH . I 5 HOH A 49 1349 61 HOH HOH . I 5 HOH A 50 1350 89 HOH HOH . I 5 HOH A 51 1351 29 HOH HOH . I 5 HOH A 52 1352 55 HOH HOH . I 5 HOH A 53 1353 22 HOH HOH . I 5 HOH A 54 1354 246 HOH HOH . I 5 HOH A 55 1355 56 HOH HOH . I 5 HOH A 56 1356 100 HOH HOH . I 5 HOH A 57 1357 48 HOH HOH . I 5 HOH A 58 1358 31 HOH HOH . I 5 HOH A 59 1359 237 HOH HOH . I 5 HOH A 60 1360 257 HOH HOH . I 5 HOH A 61 1361 256 HOH HOH . I 5 HOH A 62 1362 1 HOH HOH . I 5 HOH A 63 1363 17 HOH HOH . I 5 HOH A 64 1364 47 HOH HOH . I 5 HOH A 65 1365 42 HOH HOH . I 5 HOH A 66 1366 259 HOH HOH . I 5 HOH A 67 1367 104 HOH HOH . I 5 HOH A 68 1368 172 HOH HOH . I 5 HOH A 69 1369 120 HOH HOH . I 5 HOH A 70 1370 189 HOH HOH . I 5 HOH A 71 1371 62 HOH HOH . I 5 HOH A 72 1372 88 HOH HOH . I 5 HOH A 73 1373 102 HOH HOH . I 5 HOH A 74 1374 109 HOH HOH . I 5 HOH A 75 1375 33 HOH HOH . I 5 HOH A 76 1376 139 HOH HOH . I 5 HOH A 77 1377 52 HOH HOH . I 5 HOH A 78 1378 64 HOH HOH . I 5 HOH A 79 1379 7 HOH HOH . I 5 HOH A 80 1380 201 HOH HOH . I 5 HOH A 81 1381 70 HOH HOH . I 5 HOH A 82 1382 45 HOH HOH . I 5 HOH A 83 1383 14 HOH HOH . I 5 HOH A 84 1384 24 HOH HOH . I 5 HOH A 85 1385 116 HOH HOH . I 5 HOH A 86 1386 141 HOH HOH . I 5 HOH A 87 1387 154 HOH HOH . I 5 HOH A 88 1388 131 HOH HOH . I 5 HOH A 89 1389 105 HOH HOH . I 5 HOH A 90 1390 192 HOH HOH . I 5 HOH A 91 1391 187 HOH HOH . I 5 HOH A 92 1392 6 HOH HOH . I 5 HOH A 93 1393 260 HOH HOH . I 5 HOH A 94 1394 122 HOH HOH . I 5 HOH A 95 1395 40 HOH HOH . I 5 HOH A 96 1396 12 HOH HOH . I 5 HOH A 97 1397 155 HOH HOH . I 5 HOH A 98 1398 90 HOH HOH . I 5 HOH A 99 1399 86 HOH HOH . I 5 HOH A 100 1400 176 HOH HOH . I 5 HOH A 101 1401 4 HOH HOH . I 5 HOH A 102 1402 85 HOH HOH . I 5 HOH A 103 1403 216 HOH HOH . I 5 HOH A 104 1404 95 HOH HOH . I 5 HOH A 105 1405 140 HOH HOH . I 5 HOH A 106 1406 94 HOH HOH . I 5 HOH A 107 1407 234 HOH HOH . I 5 HOH A 108 1408 190 HOH HOH . I 5 HOH A 109 1409 73 HOH HOH . I 5 HOH A 110 1410 72 HOH HOH . I 5 HOH A 111 1411 101 HOH HOH . I 5 HOH A 112 1412 15 HOH HOH . I 5 HOH A 113 1413 3 HOH HOH . I 5 HOH A 114 1414 49 HOH HOH . I 5 HOH A 115 1415 30 HOH HOH . I 5 HOH A 116 1416 76 HOH HOH . I 5 HOH A 117 1417 83 HOH HOH . I 5 HOH A 118 1418 18 HOH HOH . I 5 HOH A 119 1419 36 HOH HOH . I 5 HOH A 120 1420 58 HOH HOH . I 5 HOH A 121 1421 78 HOH HOH . I 5 HOH A 122 1422 54 HOH HOH . I 5 HOH A 123 1423 51 HOH HOH . I 5 HOH A 124 1424 82 HOH HOH . I 5 HOH A 125 1425 221 HOH HOH . I 5 HOH A 126 1426 196 HOH HOH . I 5 HOH A 127 1427 67 HOH HOH . I 5 HOH A 128 1428 275 HOH HOH . I 5 HOH A 129 1429 53 HOH HOH . I 5 HOH A 130 1430 39 HOH HOH . I 5 HOH A 131 1431 150 HOH HOH . I 5 HOH A 132 1432 147 HOH HOH . I 5 HOH A 133 1433 11 HOH HOH . I 5 HOH A 134 1434 97 HOH HOH . I 5 HOH A 135 1435 26 HOH HOH . I 5 HOH A 136 1436 254 HOH HOH . I 5 HOH A 137 1437 124 HOH HOH . I 5 HOH A 138 1438 123 HOH HOH . I 5 HOH A 139 1439 38 HOH HOH . I 5 HOH A 140 1440 209 HOH HOH . I 5 HOH A 141 1441 10 HOH HOH . I 5 HOH A 142 1442 265 HOH HOH . I 5 HOH A 143 1443 177 HOH HOH . I 5 HOH A 144 1444 207 HOH HOH . I 5 HOH A 145 1445 230 HOH HOH . I 5 HOH A 146 1446 130 HOH HOH . I 5 HOH A 147 1447 247 HOH HOH . I 5 HOH A 148 1448 57 HOH HOH . I 5 HOH A 149 1449 96 HOH HOH . I 5 HOH A 150 1450 258 HOH HOH . I 5 HOH A 151 1451 199 HOH HOH . I 5 HOH A 152 1452 244 HOH HOH . I 5 HOH A 153 1453 93 HOH HOH . I 5 HOH A 154 1454 220 HOH HOH . I 5 HOH A 155 1455 184 HOH HOH . I 5 HOH A 156 1456 167 HOH HOH . I 5 HOH A 157 1457 243 HOH HOH . I 5 HOH A 158 1458 114 HOH HOH . I 5 HOH A 159 1459 261 HOH HOH . I 5 HOH A 160 1460 110 HOH HOH . I 5 HOH A 161 1461 69 HOH HOH . I 5 HOH A 162 1462 164 HOH HOH . I 5 HOH A 163 1463 186 HOH HOH . I 5 HOH A 164 1464 41 HOH HOH . I 5 HOH A 165 1465 266 HOH HOH . I 5 HOH A 166 1466 135 HOH HOH . I 5 HOH A 167 1467 81 HOH HOH . I 5 HOH A 168 1468 91 HOH HOH . I 5 HOH A 169 1469 224 HOH HOH . I 5 HOH A 170 1470 225 HOH HOH . I 5 HOH A 171 1471 60 HOH HOH . I 5 HOH A 172 1472 152 HOH HOH . I 5 HOH A 173 1473 188 HOH HOH . I 5 HOH A 174 1474 269 HOH HOH . I 5 HOH A 175 1475 159 HOH HOH . I 5 HOH A 176 1476 264 HOH HOH . I 5 HOH A 177 1477 267 HOH HOH . I 5 HOH A 178 1478 248 HOH HOH . I 5 HOH A 179 1479 215 HOH HOH . I 5 HOH A 180 1480 112 HOH HOH . I 5 HOH A 181 1481 151 HOH HOH . I 5 HOH A 182 1482 276 HOH HOH . I 5 HOH A 183 1483 37 HOH HOH . I 5 HOH A 184 1484 143 HOH HOH . I 5 HOH A 185 1485 174 HOH HOH . I 5 HOH A 186 1486 8 HOH HOH . I 5 HOH A 187 1487 103 HOH HOH . I 5 HOH A 188 1488 157 HOH HOH . I 5 HOH A 189 1489 206 HOH HOH . I 5 HOH A 190 1490 84 HOH HOH . I 5 HOH A 191 1491 146 HOH HOH . I 5 HOH A 192 1492 160 HOH HOH . I 5 HOH A 193 1493 145 HOH HOH . I 5 HOH A 194 1494 119 HOH HOH . I 5 HOH A 195 1495 71 HOH HOH . I 5 HOH A 196 1496 250 HOH HOH . I 5 HOH A 197 1497 66 HOH HOH . I 5 HOH A 198 1498 44 HOH HOH . I 5 HOH A 199 1499 233 HOH HOH . I 5 HOH A 200 1500 74 HOH HOH . I 5 HOH A 201 1501 217 HOH HOH . I 5 HOH A 202 1502 185 HOH HOH . I 5 HOH A 203 1503 202 HOH HOH . I 5 HOH A 204 1504 125 HOH HOH . I 5 HOH A 205 1505 205 HOH HOH . I 5 HOH A 206 1506 148 HOH HOH . I 5 HOH A 207 1507 127 HOH HOH . I 5 HOH A 208 1508 149 HOH HOH . I 5 HOH A 209 1509 268 HOH HOH . I 5 HOH A 210 1510 117 HOH HOH . I 5 HOH A 211 1511 63 HOH HOH . I 5 HOH A 212 1512 168 HOH HOH . I 5 HOH A 213 1513 245 HOH HOH . I 5 HOH A 214 1514 183 HOH HOH . I 5 HOH A 215 1515 251 HOH HOH . I 5 HOH A 216 1516 181 HOH HOH . I 5 HOH A 217 1517 255 HOH HOH . I 5 HOH A 218 1518 249 HOH HOH . I 5 HOH A 219 1519 270 HOH HOH . I 5 HOH A 220 1520 262 HOH HOH . I 5 HOH A 221 1521 178 HOH HOH . I 5 HOH A 222 1522 180 HOH HOH . I 5 HOH A 223 1523 194 HOH HOH . I 5 HOH A 224 1524 35 HOH HOH . I 5 HOH A 225 1525 263 HOH HOH . I 5 HOH A 226 1526 219 HOH HOH . I 5 HOH A 227 1527 213 HOH HOH . I 5 HOH A 228 1528 136 HOH HOH . I 5 HOH A 229 1529 214 HOH HOH . I 5 HOH A 230 1530 272 HOH HOH . I 5 HOH A 231 1531 204 HOH HOH . I 5 HOH A 232 1532 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . H 4 4.745 32.111 -0.172 1 46.97 ? C1 EDO 1207 A 1 HETATM 2 O O1 EDO . . . H 4 5.76 31.711 -1.044 1 54.38 ? O1 EDO 1207 A 1 HETATM 3 C C2 EDO . . . H 4 4.13 33.316 -0.746 1 37.81 ? C2 EDO 1207 A 1 HETATM 4 O O2 EDO . . . H 4 3.74 33.159 -2.106 1 49.86 ? O2 EDO 1207 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #