data_5R4Y # _model_server_result.job_id XWHMwYZau_qFw04iElaeKQ _model_server_result.datetime_utc '2024-11-22 22:32:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r4y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 5R4Y # _exptl.entry_id 5R4Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 248.296 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 5R4Y _cell.length_a 80.55 _cell.length_b 80.55 _cell.length_c 139.36 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R4Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H17 F N2 O' _chem_comp.formula_weight 248.296 _chem_comp.id GX4 _chem_comp.mon_nstd_flag . _chem_comp.name cyclopropyl-[4-(4-fluorophenyl)piperazin-1-yl]methanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 GX4 doub 138 n y C1 C GX4 sing 139 n y C2 C3 GX4 sing 140 n y F C GX4 sing 141 n n C C5 GX4 doub 142 n y C6 C7 GX4 sing 143 n n C6 N GX4 sing 144 n n C3 N GX4 sing 145 n n C3 C4 GX4 doub 146 n y C7 N1 GX4 sing 147 n n C5 C4 GX4 sing 148 n y N C9 GX4 sing 149 n n O C10 GX4 doub 150 n n N1 C10 GX4 sing 151 n n N1 C8 GX4 sing 152 n n C9 C8 GX4 sing 153 n n C10 C11 GX4 sing 154 n n C11 C13 GX4 sing 155 n n C11 C12 GX4 sing 156 n n C13 C12 GX4 sing 157 n n C4 H1 GX4 sing 158 n n C5 H2 GX4 sing 159 n n C6 H3 GX4 sing 160 n n C6 H4 GX4 sing 161 n n C7 H5 GX4 sing 162 n n C7 H6 GX4 sing 163 n n C8 H7 GX4 sing 164 n n C8 H8 GX4 sing 165 n n C13 H9 GX4 sing 166 n n C13 H10 GX4 sing 167 n n C11 H11 GX4 sing 168 n n C12 H12 GX4 sing 169 n n C12 H13 GX4 sing 170 n n C9 H14 GX4 sing 171 n n C9 H15 GX4 sing 172 n n C2 H16 GX4 sing 173 n n C1 H17 GX4 sing 174 n n # _atom_sites.entry_id 5R4Y _atom_sites.fract_transf_matrix[1][1] 0.012415 _atom_sites.fract_transf_matrix[1][2] 0.007168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014335 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007176 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GX4 A 1 1201 1201 GX4 LIG . C 3 SO4 A 1 1202 1 SO4 SO4 . D 3 SO4 A 1 1203 2 SO4 SO4 . E 4 EDO A 1 1204 3 EDO EDO . F 4 EDO A 1 1205 5 EDO EDO . G 4 EDO A 1 1206 6 EDO EDO . H 4 EDO A 1 1207 7 EDO EDO . I 5 HOH A 1 1301 256 HOH HOH . I 5 HOH A 2 1302 79 HOH HOH . I 5 HOH A 3 1303 158 HOH HOH . I 5 HOH A 4 1304 251 HOH HOH . I 5 HOH A 5 1305 184 HOH HOH . I 5 HOH A 6 1306 118 HOH HOH . I 5 HOH A 7 1307 68 HOH HOH . I 5 HOH A 8 1308 98 HOH HOH . I 5 HOH A 9 1309 134 HOH HOH . I 5 HOH A 10 1310 32 HOH HOH . I 5 HOH A 11 1311 128 HOH HOH . I 5 HOH A 12 1312 59 HOH HOH . I 5 HOH A 13 1313 27 HOH HOH . I 5 HOH A 14 1314 191 HOH HOH . I 5 HOH A 15 1315 111 HOH HOH . I 5 HOH A 16 1316 106 HOH HOH . I 5 HOH A 17 1317 209 HOH HOH . I 5 HOH A 18 1318 142 HOH HOH . I 5 HOH A 19 1319 34 HOH HOH . I 5 HOH A 20 1320 47 HOH HOH . I 5 HOH A 21 1321 162 HOH HOH . I 5 HOH A 22 1322 144 HOH HOH . I 5 HOH A 23 1323 52 HOH HOH . I 5 HOH A 24 1324 88 HOH HOH . I 5 HOH A 25 1325 132 HOH HOH . I 5 HOH A 26 1326 163 HOH HOH . I 5 HOH A 27 1327 139 HOH HOH . I 5 HOH A 28 1328 43 HOH HOH . I 5 HOH A 29 1329 201 HOH HOH . I 5 HOH A 30 1330 20 HOH HOH . I 5 HOH A 31 1331 50 HOH HOH . I 5 HOH A 32 1332 200 HOH HOH . I 5 HOH A 33 1333 61 HOH HOH . I 5 HOH A 34 1334 75 HOH HOH . I 5 HOH A 35 1335 19 HOH HOH . I 5 HOH A 36 1336 129 HOH HOH . I 5 HOH A 37 1337 5 HOH HOH . I 5 HOH A 38 1338 13 HOH HOH . I 5 HOH A 39 1339 28 HOH HOH . I 5 HOH A 40 1340 104 HOH HOH . I 5 HOH A 41 1341 109 HOH HOH . I 5 HOH A 42 1342 17 HOH HOH . I 5 HOH A 43 1343 154 HOH HOH . I 5 HOH A 44 1344 56 HOH HOH . I 5 HOH A 45 1345 70 HOH HOH . I 5 HOH A 46 1346 25 HOH HOH . I 5 HOH A 47 1347 55 HOH HOH . I 5 HOH A 48 1348 46 HOH HOH . I 5 HOH A 49 1349 206 HOH HOH . I 5 HOH A 50 1350 42 HOH HOH . I 5 HOH A 51 1351 9 HOH HOH . I 5 HOH A 52 1352 22 HOH HOH . I 5 HOH A 53 1353 189 HOH HOH . I 5 HOH A 54 1354 85 HOH HOH . I 5 HOH A 55 1355 64 HOH HOH . I 5 HOH A 56 1356 161 HOH HOH . I 5 HOH A 57 1357 77 HOH HOH . I 5 HOH A 58 1358 1 HOH HOH . I 5 HOH A 59 1359 33 HOH HOH . I 5 HOH A 60 1360 76 HOH HOH . I 5 HOH A 61 1361 165 HOH HOH . I 5 HOH A 62 1362 92 HOH HOH . I 5 HOH A 63 1363 7 HOH HOH . I 5 HOH A 64 1364 171 HOH HOH . I 5 HOH A 65 1365 194 HOH HOH . I 5 HOH A 66 1366 58 HOH HOH . I 5 HOH A 67 1367 160 HOH HOH . I 5 HOH A 68 1368 80 HOH HOH . I 5 HOH A 69 1369 192 HOH HOH . I 5 HOH A 70 1370 196 HOH HOH . I 5 HOH A 71 1371 16 HOH HOH . I 5 HOH A 72 1372 23 HOH HOH . I 5 HOH A 73 1373 221 HOH HOH . I 5 HOH A 74 1374 172 HOH HOH . I 5 HOH A 75 1375 130 HOH HOH . I 5 HOH A 76 1376 31 HOH HOH . I 5 HOH A 77 1377 141 HOH HOH . I 5 HOH A 78 1378 15 HOH HOH . I 5 HOH A 79 1379 140 HOH HOH . I 5 HOH A 80 1380 49 HOH HOH . I 5 HOH A 81 1381 216 HOH HOH . I 5 HOH A 82 1382 176 HOH HOH . I 5 HOH A 83 1383 87 HOH HOH . I 5 HOH A 84 1384 2 HOH HOH . I 5 HOH A 85 1385 21 HOH HOH . I 5 HOH A 86 1386 14 HOH HOH . I 5 HOH A 87 1387 100 HOH HOH . I 5 HOH A 88 1388 30 HOH HOH . I 5 HOH A 89 1389 29 HOH HOH . I 5 HOH A 90 1390 99 HOH HOH . I 5 HOH A 91 1391 45 HOH HOH . I 5 HOH A 92 1392 120 HOH HOH . I 5 HOH A 93 1393 147 HOH HOH . I 5 HOH A 94 1394 95 HOH HOH . I 5 HOH A 95 1395 107 HOH HOH . I 5 HOH A 96 1396 62 HOH HOH . I 5 HOH A 97 1397 67 HOH HOH . I 5 HOH A 98 1398 236 HOH HOH . I 5 HOH A 99 1399 197 HOH HOH . I 5 HOH A 100 1400 83 HOH HOH . I 5 HOH A 101 1401 6 HOH HOH . I 5 HOH A 102 1402 36 HOH HOH . I 5 HOH A 103 1403 54 HOH HOH . I 5 HOH A 104 1404 102 HOH HOH . I 5 HOH A 105 1405 24 HOH HOH . I 5 HOH A 106 1406 113 HOH HOH . I 5 HOH A 107 1407 12 HOH HOH . I 5 HOH A 108 1408 3 HOH HOH . I 5 HOH A 109 1409 124 HOH HOH . I 5 HOH A 110 1410 247 HOH HOH . I 5 HOH A 111 1411 131 HOH HOH . I 5 HOH A 112 1412 4 HOH HOH . I 5 HOH A 113 1413 40 HOH HOH . I 5 HOH A 114 1414 48 HOH HOH . I 5 HOH A 115 1415 82 HOH HOH . I 5 HOH A 116 1416 155 HOH HOH . I 5 HOH A 117 1417 187 HOH HOH . I 5 HOH A 118 1418 51 HOH HOH . I 5 HOH A 119 1419 94 HOH HOH . I 5 HOH A 120 1420 86 HOH HOH . I 5 HOH A 121 1421 53 HOH HOH . I 5 HOH A 122 1422 190 HOH HOH . I 5 HOH A 123 1423 234 HOH HOH . I 5 HOH A 124 1424 89 HOH HOH . I 5 HOH A 125 1425 11 HOH HOH . I 5 HOH A 126 1426 145 HOH HOH . I 5 HOH A 127 1427 18 HOH HOH . I 5 HOH A 128 1428 73 HOH HOH . I 5 HOH A 129 1429 90 HOH HOH . I 5 HOH A 130 1430 101 HOH HOH . I 5 HOH A 131 1431 123 HOH HOH . I 5 HOH A 132 1432 78 HOH HOH . I 5 HOH A 133 1433 116 HOH HOH . I 5 HOH A 134 1434 72 HOH HOH . I 5 HOH A 135 1435 122 HOH HOH . I 5 HOH A 136 1436 215 HOH HOH . I 5 HOH A 137 1437 230 HOH HOH . I 5 HOH A 138 1438 26 HOH HOH . I 5 HOH A 139 1439 10 HOH HOH . I 5 HOH A 140 1440 246 HOH HOH . I 5 HOH A 141 1441 240 HOH HOH . I 5 HOH A 142 1442 257 HOH HOH . I 5 HOH A 143 1443 39 HOH HOH . I 5 HOH A 144 1444 105 HOH HOH . I 5 HOH A 145 1445 258 HOH HOH . I 5 HOH A 146 1446 57 HOH HOH . I 5 HOH A 147 1447 207 HOH HOH . I 5 HOH A 148 1448 254 HOH HOH . I 5 HOH A 149 1449 175 HOH HOH . I 5 HOH A 150 1450 177 HOH HOH . I 5 HOH A 151 1451 97 HOH HOH . I 5 HOH A 152 1452 164 HOH HOH . I 5 HOH A 153 1453 180 HOH HOH . I 5 HOH A 154 1454 115 HOH HOH . I 5 HOH A 155 1455 178 HOH HOH . I 5 HOH A 156 1456 93 HOH HOH . I 5 HOH A 157 1457 179 HOH HOH . I 5 HOH A 158 1458 96 HOH HOH . I 5 HOH A 159 1459 188 HOH HOH . I 5 HOH A 160 1460 38 HOH HOH . I 5 HOH A 161 1461 135 HOH HOH . I 5 HOH A 162 1462 69 HOH HOH . I 5 HOH A 163 1463 224 HOH HOH . I 5 HOH A 164 1464 114 HOH HOH . I 5 HOH A 165 1465 41 HOH HOH . I 5 HOH A 166 1466 152 HOH HOH . I 5 HOH A 167 1467 167 HOH HOH . I 5 HOH A 168 1468 181 HOH HOH . I 5 HOH A 169 1469 60 HOH HOH . I 5 HOH A 170 1470 150 HOH HOH . I 5 HOH A 171 1471 186 HOH HOH . I 5 HOH A 172 1472 91 HOH HOH . I 5 HOH A 173 1473 110 HOH HOH . I 5 HOH A 174 1474 81 HOH HOH . I 5 HOH A 175 1475 159 HOH HOH . I 5 HOH A 176 1476 225 HOH HOH . I 5 HOH A 177 1477 220 HOH HOH . I 5 HOH A 178 1478 157 HOH HOH . I 5 HOH A 179 1479 203 HOH HOH . I 5 HOH A 180 1480 151 HOH HOH . I 5 HOH A 181 1481 8 HOH HOH . I 5 HOH A 182 1482 217 HOH HOH . I 5 HOH A 183 1483 210 HOH HOH . I 5 HOH A 184 1484 103 HOH HOH . I 5 HOH A 185 1485 66 HOH HOH . I 5 HOH A 186 1486 37 HOH HOH . I 5 HOH A 187 1487 248 HOH HOH . I 5 HOH A 188 1488 143 HOH HOH . I 5 HOH A 189 1489 146 HOH HOH . I 5 HOH A 190 1490 119 HOH HOH . I 5 HOH A 191 1491 84 HOH HOH . I 5 HOH A 192 1492 250 HOH HOH . I 5 HOH A 193 1493 112 HOH HOH . I 5 HOH A 194 1494 233 HOH HOH . I 5 HOH A 195 1495 44 HOH HOH . I 5 HOH A 196 1496 137 HOH HOH . I 5 HOH A 197 1497 74 HOH HOH . I 5 HOH A 198 1498 125 HOH HOH . I 5 HOH A 199 1499 127 HOH HOH . I 5 HOH A 200 1500 71 HOH HOH . I 5 HOH A 201 1501 185 HOH HOH . I 5 HOH A 202 1502 149 HOH HOH . I 5 HOH A 203 1503 63 HOH HOH . I 5 HOH A 204 1504 244 HOH HOH . I 5 HOH A 205 1505 259 HOH HOH . I 5 HOH A 206 1506 117 HOH HOH . I 5 HOH A 207 1507 205 HOH HOH . I 5 HOH A 208 1508 148 HOH HOH . I 5 HOH A 209 1509 183 HOH HOH . I 5 HOH A 210 1510 35 HOH HOH . I 5 HOH A 211 1511 168 HOH HOH . I 5 HOH A 212 1512 245 HOH HOH . I 5 HOH A 213 1513 211 HOH HOH . I 5 HOH A 214 1514 255 HOH HOH . I 5 HOH A 215 1515 249 HOH HOH . I 5 HOH A 216 1516 219 HOH HOH . I 5 HOH A 217 1517 213 HOH HOH . I 5 HOH A 218 1518 121 HOH HOH . I 5 HOH A 219 1519 214 HOH HOH . I 5 HOH A 220 1520 136 HOH HOH . I 5 HOH A 221 1521 204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GX4 . . . B 2 26.566 45.452 -11.463 1 47.03 ? N1 GX4 1201 A 1 HETATM 2 C C4 GX4 . . . B 2 30.39 47.656 -14.227 1 75.81 ? C4 GX4 1201 A 1 HETATM 3 C C5 GX4 . . . B 2 31.347 48.512 -14.793 1 80.25 ? C5 GX4 1201 A 1 HETATM 4 C C6 GX4 . . . B 2 28.257 45.88 -13.225 1 51.61 ? C6 GX4 1201 A 1 HETATM 5 C C7 GX4 . . . B 2 27.461 44.828 -12.487 1 46.88 ? C7 GX4 1201 A 1 HETATM 6 C C8 GX4 . . . B 2 27.354 46.277 -10.429 1 48.76 ? C8 GX4 1201 A 1 HETATM 7 C C10 GX4 . . . B 2 25.292 44.848 -11.145 1 37.66 ? C10 GX4 1201 A 1 HETATM 8 C C13 GX4 . . . B 2 23.505 44.26 -9.399 1 42.32 ? C13 GX4 1201 A 1 HETATM 9 O O GX4 . . . B 2 24.752 44.096 -11.939 1 30.19 ? O GX4 1201 A 1 HETATM 10 C C11 GX4 . . . B 2 24.664 45.113 -9.813 1 42.31 ? C11 GX4 1201 A 1 HETATM 11 C C12 GX4 . . . B 2 23.284 45.688 -9.816 1 40.19 ? C12 GX4 1201 A 1 HETATM 12 C C9 GX4 . . . B 2 28.053 47.412 -11.198 1 52.41 ? C9 GX4 1201 A 1 HETATM 13 N N GX4 . . . B 2 28.967 46.86 -12.309 1 57.58 ? N GX4 1201 A 1 HETATM 14 C C3 GX4 . . . B 2 29.968 47.811 -12.857 1 65 ? C3 GX4 1201 A 1 HETATM 15 C C2 GX4 . . . B 2 30.545 48.865 -12.109 1 69.63 ? C2 GX4 1201 A 1 HETATM 16 C C1 GX4 . . . B 2 31.498 49.718 -12.679 1 79.51 ? C1 GX4 1201 A 1 HETATM 17 C C GX4 . . . B 2 31.897 49.535 -14.005 1 80.48 ? C GX4 1201 A 1 HETATM 18 F F GX4 . . . B 2 32.828 50.339 -14.513 1 89.87 ? F GX4 1201 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #