data_5R50 # _model_server_result.job_id OygsWBbTOwEN8MXD7zsB6w _model_server_result.datetime_utc '2024-11-22 07:49:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R50 # _exptl.entry_id 5R50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.258 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[4-(aminomethyl)phenyl]methanesulfonamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R50 _cell.length_a 49.673 _cell.length_b 52.376 _cell.length_c 102.019 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C8 H12 N2 O2 S' _chem_comp.formula_weight 200.258 _chem_comp.id RY4 _chem_comp.mon_nstd_flag . _chem_comp.name N-[4-(aminomethyl)phenyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 RY4 sing 286 n n N1 S1 RY4 sing 287 n n N1 C2 RY4 sing 288 n n S1 O1 RY4 doub 289 n n S1 O2 RY4 doub 290 n n C7 C2 RY4 doub 291 n y C7 C6 RY4 sing 292 n y C2 C3 RY4 sing 293 n y C6 C5 RY4 doub 294 n y C3 C4 RY4 doub 295 n y C5 C4 RY4 sing 296 n y C5 C8 RY4 sing 297 n n N2 C8 RY4 sing 298 n n N1 H1 RY4 sing 299 n n C4 H2 RY4 sing 300 n n C6 H3 RY4 sing 301 n n C7 H4 RY4 sing 302 n n C8 H5 RY4 sing 303 n n C8 H6 RY4 sing 304 n n C1 H7 RY4 sing 305 n n C1 H8 RY4 sing 306 n n C1 H9 RY4 sing 307 n n C3 H10 RY4 sing 308 n n N2 H11 RY4 sing 309 n n N2 H12 RY4 sing 310 n n # _atom_sites.entry_id 5R50 _atom_sites.fract_transf_matrix[1][1] 0.020132 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019093 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009802 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RY4 A 1 401 401 RY4 LIG . C 2 RY4 A 1 402 501 RY4 LIG . D 3 DMS A 1 403 1 DMS DMS . E 3 DMS A 1 404 2 DMS DMS . F 3 DMS A 1 405 3 DMS DMS . G 3 DMS A 1 406 4 DMS DMS . H 4 HOH A 1 501 131 HOH HOH . H 4 HOH A 2 502 147 HOH HOH . H 4 HOH A 3 503 90 HOH HOH . H 4 HOH A 4 504 93 HOH HOH . H 4 HOH A 5 505 146 HOH HOH . H 4 HOH A 6 506 56 HOH HOH . H 4 HOH A 7 507 116 HOH HOH . H 4 HOH A 8 508 112 HOH HOH . H 4 HOH A 9 509 141 HOH HOH . H 4 HOH A 10 510 121 HOH HOH . H 4 HOH A 11 511 75 HOH HOH . H 4 HOH A 12 512 145 HOH HOH . H 4 HOH A 13 513 40 HOH HOH . H 4 HOH A 14 514 125 HOH HOH . H 4 HOH A 15 515 158 HOH HOH . H 4 HOH A 16 516 157 HOH HOH . H 4 HOH A 17 517 45 HOH HOH . H 4 HOH A 18 518 111 HOH HOH . H 4 HOH A 19 519 71 HOH HOH . H 4 HOH A 20 520 82 HOH HOH . H 4 HOH A 21 521 50 HOH HOH . H 4 HOH A 22 522 129 HOH HOH . H 4 HOH A 23 523 94 HOH HOH . H 4 HOH A 24 524 47 HOH HOH . H 4 HOH A 25 525 99 HOH HOH . H 4 HOH A 26 526 37 HOH HOH . H 4 HOH A 27 527 132 HOH HOH . H 4 HOH A 28 528 13 HOH HOH . H 4 HOH A 29 529 61 HOH HOH . H 4 HOH A 30 530 1 HOH HOH . H 4 HOH A 31 531 138 HOH HOH . H 4 HOH A 32 532 29 HOH HOH . H 4 HOH A 33 533 83 HOH HOH . H 4 HOH A 34 534 12 HOH HOH . H 4 HOH A 35 535 57 HOH HOH . H 4 HOH A 36 536 137 HOH HOH . H 4 HOH A 37 537 63 HOH HOH . H 4 HOH A 38 538 21 HOH HOH . H 4 HOH A 39 539 102 HOH HOH . H 4 HOH A 40 540 117 HOH HOH . H 4 HOH A 41 541 30 HOH HOH . H 4 HOH A 42 542 58 HOH HOH . H 4 HOH A 43 543 115 HOH HOH . H 4 HOH A 44 544 34 HOH HOH . H 4 HOH A 45 545 39 HOH HOH . H 4 HOH A 46 546 139 HOH HOH . H 4 HOH A 47 547 144 HOH HOH . H 4 HOH A 48 548 3 HOH HOH . H 4 HOH A 49 549 153 HOH HOH . H 4 HOH A 50 550 148 HOH HOH . H 4 HOH A 51 551 107 HOH HOH . H 4 HOH A 52 552 114 HOH HOH . H 4 HOH A 53 553 36 HOH HOH . H 4 HOH A 54 554 84 HOH HOH . H 4 HOH A 55 555 134 HOH HOH . H 4 HOH A 56 556 69 HOH HOH . H 4 HOH A 57 557 8 HOH HOH . H 4 HOH A 58 558 88 HOH HOH . H 4 HOH A 59 559 73 HOH HOH . H 4 HOH A 60 560 14 HOH HOH . H 4 HOH A 61 561 2 HOH HOH . H 4 HOH A 62 562 120 HOH HOH . H 4 HOH A 63 563 19 HOH HOH . H 4 HOH A 64 564 160 HOH HOH . H 4 HOH A 65 565 10 HOH HOH . H 4 HOH A 66 566 5 HOH HOH . H 4 HOH A 67 567 24 HOH HOH . H 4 HOH A 68 568 6 HOH HOH . H 4 HOH A 69 569 100 HOH HOH . H 4 HOH A 70 570 86 HOH HOH . H 4 HOH A 71 571 91 HOH HOH . H 4 HOH A 72 572 97 HOH HOH . H 4 HOH A 73 573 23 HOH HOH . H 4 HOH A 74 574 150 HOH HOH . H 4 HOH A 75 575 87 HOH HOH . H 4 HOH A 76 576 44 HOH HOH . H 4 HOH A 77 577 89 HOH HOH . H 4 HOH A 78 578 41 HOH HOH . H 4 HOH A 79 579 15 HOH HOH . H 4 HOH A 80 580 38 HOH HOH . H 4 HOH A 81 581 59 HOH HOH . H 4 HOH A 82 582 49 HOH HOH . H 4 HOH A 83 583 55 HOH HOH . H 4 HOH A 84 584 27 HOH HOH . H 4 HOH A 85 585 143 HOH HOH . H 4 HOH A 86 586 28 HOH HOH . H 4 HOH A 87 587 4 HOH HOH . H 4 HOH A 88 588 70 HOH HOH . H 4 HOH A 89 589 103 HOH HOH . H 4 HOH A 90 590 135 HOH HOH . H 4 HOH A 91 591 20 HOH HOH . H 4 HOH A 92 592 123 HOH HOH . H 4 HOH A 93 593 136 HOH HOH . H 4 HOH A 94 594 127 HOH HOH . H 4 HOH A 95 595 31 HOH HOH . H 4 HOH A 96 596 22 HOH HOH . H 4 HOH A 97 597 46 HOH HOH . H 4 HOH A 98 598 43 HOH HOH . H 4 HOH A 99 599 101 HOH HOH . H 4 HOH A 100 600 72 HOH HOH . H 4 HOH A 101 601 118 HOH HOH . H 4 HOH A 102 602 74 HOH HOH . H 4 HOH A 103 603 9 HOH HOH . H 4 HOH A 104 604 48 HOH HOH . H 4 HOH A 105 605 18 HOH HOH . H 4 HOH A 106 606 42 HOH HOH . H 4 HOH A 107 607 152 HOH HOH . H 4 HOH A 108 608 124 HOH HOH . H 4 HOH A 109 609 85 HOH HOH . H 4 HOH A 110 610 60 HOH HOH . H 4 HOH A 111 611 11 HOH HOH . H 4 HOH A 112 612 67 HOH HOH . H 4 HOH A 113 613 105 HOH HOH . H 4 HOH A 114 614 96 HOH HOH . H 4 HOH A 115 615 35 HOH HOH . H 4 HOH A 116 616 142 HOH HOH . H 4 HOH A 117 617 16 HOH HOH . H 4 HOH A 118 618 128 HOH HOH . H 4 HOH A 119 619 133 HOH HOH . H 4 HOH A 120 620 130 HOH HOH . H 4 HOH A 121 621 33 HOH HOH . H 4 HOH A 122 622 106 HOH HOH . H 4 HOH A 123 623 66 HOH HOH . H 4 HOH A 124 624 104 HOH HOH . H 4 HOH A 125 625 76 HOH HOH . H 4 HOH A 126 626 26 HOH HOH . H 4 HOH A 127 627 25 HOH HOH . H 4 HOH A 128 628 98 HOH HOH . H 4 HOH A 129 629 119 HOH HOH . H 4 HOH A 130 630 154 HOH HOH . H 4 HOH A 131 631 113 HOH HOH . H 4 HOH A 132 632 95 HOH HOH . H 4 HOH A 133 633 92 HOH HOH . H 4 HOH A 134 634 51 HOH HOH . H 4 HOH A 135 635 7 HOH HOH . H 4 HOH A 136 636 32 HOH HOH . H 4 HOH A 137 637 155 HOH HOH . H 4 HOH A 138 638 68 HOH HOH . H 4 HOH A 139 639 78 HOH HOH . H 4 HOH A 140 640 80 HOH HOH . H 4 HOH A 141 641 108 HOH HOH . H 4 HOH A 142 642 54 HOH HOH . H 4 HOH A 143 643 17 HOH HOH . H 4 HOH A 144 644 151 HOH HOH . H 4 HOH A 145 645 64 HOH HOH . H 4 HOH A 146 646 79 HOH HOH . H 4 HOH A 147 647 140 HOH HOH . H 4 HOH A 148 648 159 HOH HOH . H 4 HOH A 149 649 149 HOH HOH . H 4 HOH A 150 650 156 HOH HOH . H 4 HOH A 151 651 162 HOH HOH . H 4 HOH A 152 652 161 HOH HOH . H 4 HOH A 153 653 81 HOH HOH . H 4 HOH A 154 654 109 HOH HOH . H 4 HOH A 155 655 53 HOH HOH . H 4 HOH A 156 656 110 HOH HOH . H 4 HOH A 157 657 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RY4 . . . B 2 7.315 17.948 4.976 0.48 58.67 ? N1 RY4 401 A 1 HETATM 2 C C4 RY4 . . . B 2 6.542 19.114 8.355 0.48 57.57 ? C4 RY4 401 A 1 HETATM 3 C C5 RY4 . . . B 2 5.419 19.896 8.18 0.48 57.27 ? C5 RY4 401 A 1 HETATM 4 C C6 RY4 . . . B 2 4.909 20.038 6.898 0.48 55.05 ? C6 RY4 401 A 1 HETATM 5 C C7 RY4 . . . B 2 5.517 19.414 5.822 0.48 56.83 ? C7 RY4 401 A 1 HETATM 6 C C8 RY4 . . . B 2 4.788 20.55 9.385 0.48 56.04 ? C8 RY4 401 A 1 HETATM 7 C C1 RY4 . . . B 2 7.336 15.695 3.463 0.48 56.1 ? C1 RY4 401 A 1 HETATM 8 C C2 RY4 . . . B 2 6.647 18.637 6.019 0.48 56.78 ? C2 RY4 401 A 1 HETATM 9 C C3 RY4 . . . B 2 7.156 18.488 7.289 0.48 57.81 ? C3 RY4 401 A 1 HETATM 10 N N2 RY4 . . . B 2 3.378 20.849 9.199 0.48 55.31 ? N2 RY4 401 A 1 HETATM 11 O O1 RY4 . . . B 2 9.215 16.391 5.093 0.48 57.6 ? O1 RY4 401 A 1 HETATM 12 O O2 RY4 . . . B 2 7.052 15.73 6.033 0.48 54.72 ? O2 RY4 401 A 1 HETATM 13 S S1 RY4 . . . B 2 7.792 16.387 5.004 0.48 57.09 ? S1 RY4 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #