data_5R52 # _model_server_result.job_id PleDGBaB3aMZ1Ko8IZf-KQ _model_server_result.datetime_utc '2024-11-06 22:39:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R52 # _exptl.entry_id 5R52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 239.225 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R52 _cell.length_a 49.57 _cell.length_b 52.37 _cell.length_c 101.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H13 N O5' _chem_comp.formula_weight 239.225 _chem_comp.id GQJ _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (2~{S},4~{R})-1-(furan-2-ylcarbonyl)-4-oxidanyl-pyrrolidine-2-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C12 GQJ sing 138 n y C13 C14 GQJ doub 139 n y C12 C11 GQJ doub 140 n y C14 O15 GQJ sing 141 n y O16 C10 GQJ doub 142 n n C11 C10 GQJ sing 143 n n C11 O15 GQJ sing 144 n y C10 N09 GQJ sing 145 n n C01 O02 GQJ sing 146 n n O02 C03 GQJ sing 147 n n O17 C03 GQJ doub 148 n n C03 C04 GQJ sing 149 n n N09 C04 GQJ sing 150 n n N09 C08 GQJ sing 151 n n C04 C05 GQJ sing 152 n n C08 C06 GQJ sing 153 n n C05 C06 GQJ sing 154 n n O07 C06 GQJ sing 155 n n C13 H1 GQJ sing 156 n n C01 H2 GQJ sing 157 n n C01 H3 GQJ sing 158 n n C01 H4 GQJ sing 159 n n C04 H5 GQJ sing 160 n n C05 H6 GQJ sing 161 n n C05 H7 GQJ sing 162 n n C06 H8 GQJ sing 163 n n C08 H9 GQJ sing 164 n n C08 H10 GQJ sing 165 n n C12 H11 GQJ sing 166 n n C14 H12 GQJ sing 167 n n O07 H13 GQJ sing 168 n n # _atom_sites.entry_id 5R52 _atom_sites.fract_transf_matrix[1][1] 0.020173 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GQJ A 1 401 401 GQJ LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 4 HOH A 1 501 147 HOH HOH . G 4 HOH A 2 502 158 HOH HOH . G 4 HOH A 3 503 65 HOH HOH . G 4 HOH A 4 504 157 HOH HOH . G 4 HOH A 5 505 156 HOH HOH . G 4 HOH A 6 506 131 HOH HOH . G 4 HOH A 7 507 112 HOH HOH . G 4 HOH A 8 508 146 HOH HOH . G 4 HOH A 9 509 93 HOH HOH . G 4 HOH A 10 510 141 HOH HOH . G 4 HOH A 11 511 75 HOH HOH . G 4 HOH A 12 512 116 HOH HOH . G 4 HOH A 13 513 62 HOH HOH . G 4 HOH A 14 514 145 HOH HOH . G 4 HOH A 15 515 45 HOH HOH . G 4 HOH A 16 516 50 HOH HOH . G 4 HOH A 17 517 71 HOH HOH . G 4 HOH A 18 518 63 HOH HOH . G 4 HOH A 19 519 56 HOH HOH . G 4 HOH A 20 520 132 HOH HOH . G 4 HOH A 21 521 121 HOH HOH . G 4 HOH A 22 522 82 HOH HOH . G 4 HOH A 23 523 125 HOH HOH . G 4 HOH A 24 524 37 HOH HOH . G 4 HOH A 25 525 90 HOH HOH . G 4 HOH A 26 526 129 HOH HOH . G 4 HOH A 27 527 138 HOH HOH . G 4 HOH A 28 528 58 HOH HOH . G 4 HOH A 29 529 61 HOH HOH . G 4 HOH A 30 530 102 HOH HOH . G 4 HOH A 31 531 88 HOH HOH . G 4 HOH A 32 532 69 HOH HOH . G 4 HOH A 33 533 73 HOH HOH . G 4 HOH A 34 534 1 HOH HOH . G 4 HOH A 35 535 40 HOH HOH . G 4 HOH A 36 536 47 HOH HOH . G 4 HOH A 37 537 114 HOH HOH . G 4 HOH A 38 538 3 HOH HOH . G 4 HOH A 39 539 143 HOH HOH . G 4 HOH A 40 540 120 HOH HOH . G 4 HOH A 41 541 137 HOH HOH . G 4 HOH A 42 542 13 HOH HOH . G 4 HOH A 43 543 21 HOH HOH . G 4 HOH A 44 544 46 HOH HOH . G 4 HOH A 45 545 115 HOH HOH . G 4 HOH A 46 546 99 HOH HOH . G 4 HOH A 47 547 83 HOH HOH . G 4 HOH A 48 548 57 HOH HOH . G 4 HOH A 49 549 27 HOH HOH . G 4 HOH A 50 550 111 HOH HOH . G 4 HOH A 51 551 84 HOH HOH . G 4 HOH A 52 552 19 HOH HOH . G 4 HOH A 53 553 160 HOH HOH . G 4 HOH A 54 554 2 HOH HOH . G 4 HOH A 55 555 127 HOH HOH . G 4 HOH A 56 556 20 HOH HOH . G 4 HOH A 57 557 41 HOH HOH . G 4 HOH A 58 558 91 HOH HOH . G 4 HOH A 59 559 34 HOH HOH . G 4 HOH A 60 560 29 HOH HOH . G 4 HOH A 61 561 8 HOH HOH . G 4 HOH A 62 562 72 HOH HOH . G 4 HOH A 63 563 30 HOH HOH . G 4 HOH A 64 564 60 HOH HOH . G 4 HOH A 65 565 117 HOH HOH . G 4 HOH A 66 566 24 HOH HOH . G 4 HOH A 67 567 6 HOH HOH . G 4 HOH A 68 568 14 HOH HOH . G 4 HOH A 69 569 139 HOH HOH . G 4 HOH A 70 570 10 HOH HOH . G 4 HOH A 71 571 5 HOH HOH . G 4 HOH A 72 572 36 HOH HOH . G 4 HOH A 73 573 22 HOH HOH . G 4 HOH A 74 574 96 HOH HOH . G 4 HOH A 75 575 113 HOH HOH . G 4 HOH A 76 576 105 HOH HOH . G 4 HOH A 77 577 101 HOH HOH . G 4 HOH A 78 578 136 HOH HOH . G 4 HOH A 79 579 23 HOH HOH . G 4 HOH A 80 580 148 HOH HOH . G 4 HOH A 81 581 118 HOH HOH . G 4 HOH A 82 582 31 HOH HOH . G 4 HOH A 83 583 103 HOH HOH . G 4 HOH A 84 584 74 HOH HOH . G 4 HOH A 85 585 55 HOH HOH . G 4 HOH A 86 586 35 HOH HOH . G 4 HOH A 87 587 94 HOH HOH . G 4 HOH A 88 588 122 HOH HOH . G 4 HOH A 89 589 39 HOH HOH . G 4 HOH A 90 590 97 HOH HOH . G 4 HOH A 91 591 38 HOH HOH . G 4 HOH A 92 592 12 HOH HOH . G 4 HOH A 93 593 152 HOH HOH . G 4 HOH A 94 594 133 HOH HOH . G 4 HOH A 95 595 49 HOH HOH . G 4 HOH A 96 596 28 HOH HOH . G 4 HOH A 97 597 98 HOH HOH . G 4 HOH A 98 598 18 HOH HOH . G 4 HOH A 99 599 150 HOH HOH . G 4 HOH A 100 600 42 HOH HOH . G 4 HOH A 101 601 15 HOH HOH . G 4 HOH A 102 602 11 HOH HOH . G 4 HOH A 103 603 124 HOH HOH . G 4 HOH A 104 604 154 HOH HOH . G 4 HOH A 105 605 134 HOH HOH . G 4 HOH A 106 606 9 HOH HOH . G 4 HOH A 107 607 153 HOH HOH . G 4 HOH A 108 608 4 HOH HOH . G 4 HOH A 109 609 107 HOH HOH . G 4 HOH A 110 610 44 HOH HOH . G 4 HOH A 111 611 85 HOH HOH . G 4 HOH A 112 612 59 HOH HOH . G 4 HOH A 113 613 51 HOH HOH . G 4 HOH A 114 614 87 HOH HOH . G 4 HOH A 115 615 86 HOH HOH . G 4 HOH A 116 616 80 HOH HOH . G 4 HOH A 117 617 25 HOH HOH . G 4 HOH A 118 618 43 HOH HOH . G 4 HOH A 119 619 135 HOH HOH . G 4 HOH A 120 620 123 HOH HOH . G 4 HOH A 121 621 89 HOH HOH . G 4 HOH A 122 622 108 HOH HOH . G 4 HOH A 123 623 68 HOH HOH . G 4 HOH A 124 624 100 HOH HOH . G 4 HOH A 125 625 106 HOH HOH . G 4 HOH A 126 626 67 HOH HOH . G 4 HOH A 127 627 119 HOH HOH . G 4 HOH A 128 628 66 HOH HOH . G 4 HOH A 129 629 48 HOH HOH . G 4 HOH A 130 630 33 HOH HOH . G 4 HOH A 131 631 92 HOH HOH . G 4 HOH A 132 632 77 HOH HOH . G 4 HOH A 133 633 104 HOH HOH . G 4 HOH A 134 634 16 HOH HOH . G 4 HOH A 135 635 26 HOH HOH . G 4 HOH A 136 636 144 HOH HOH . G 4 HOH A 137 637 7 HOH HOH . G 4 HOH A 138 638 130 HOH HOH . G 4 HOH A 139 639 128 HOH HOH . G 4 HOH A 140 640 155 HOH HOH . G 4 HOH A 141 641 95 HOH HOH . G 4 HOH A 142 642 126 HOH HOH . G 4 HOH A 143 643 32 HOH HOH . G 4 HOH A 144 644 70 HOH HOH . G 4 HOH A 145 645 78 HOH HOH . G 4 HOH A 146 646 17 HOH HOH . G 4 HOH A 147 647 54 HOH HOH . G 4 HOH A 148 648 142 HOH HOH . G 4 HOH A 149 649 76 HOH HOH . G 4 HOH A 150 650 151 HOH HOH . G 4 HOH A 151 651 159 HOH HOH . G 4 HOH A 152 652 64 HOH HOH . G 4 HOH A 153 653 79 HOH HOH . G 4 HOH A 154 654 81 HOH HOH . G 4 HOH A 155 655 140 HOH HOH . G 4 HOH A 156 656 162 HOH HOH . G 4 HOH A 157 657 149 HOH HOH . G 4 HOH A 158 658 53 HOH HOH . G 4 HOH A 159 659 109 HOH HOH . G 4 HOH A 160 660 110 HOH HOH . G 4 HOH A 161 661 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 GQJ . . . B 2 7.417 22.344 1.636 0.44 31.73 ? C10 GQJ 401 A 1 HETATM 2 C C13 GQJ . . . B 2 4.394 22.216 -0.41 0.44 29.99 ? C13 GQJ 401 A 1 HETATM 3 C C01 GQJ . . . B 2 10.992 25.842 3.212 0.44 32.95 ? C01 GQJ 401 A 1 HETATM 4 C C03 GQJ . . . B 2 9.714 24.187 2.101 0.44 33.03 ? C03 GQJ 401 A 1 HETATM 5 C C04 GQJ . . . B 2 9.834 22.766 1.573 0.44 33.67 ? C04 GQJ 401 A 1 HETATM 6 C C05 GQJ . . . B 2 10.836 22.678 0.415 0.44 33.35 ? C05 GQJ 401 A 1 HETATM 7 C C06 GQJ . . . B 2 10.324 21.512 -0.417 0.44 32.78 ? C06 GQJ 401 A 1 HETATM 8 C C08 GQJ . . . B 2 8.812 21.66 -0.338 0.44 33.59 ? C08 GQJ 401 A 1 HETATM 9 C C11 GQJ . . . B 2 6.167 22.218 1.017 0.44 29.16 ? C11 GQJ 401 A 1 HETATM 10 C C12 GQJ . . . B 2 5.806 22.255 -0.383 0.44 31.11 ? C12 GQJ 401 A 1 HETATM 11 C C14 GQJ . . . B 2 3.919 22.028 0.879 0.44 31.42 ? C14 GQJ 401 A 1 HETATM 12 N N09 GQJ . . . B 2 8.601 22.261 0.985 0.44 32.57 ? N09 GQJ 401 A 1 HETATM 13 O O02 GQJ . . . B 2 10.674 24.445 2.978 0.44 31.9 ? O02 GQJ 401 A 1 HETATM 14 O O07 GQJ . . . B 2 10.721 20.288 0.175 0.44 33.28 ? O07 GQJ 401 A 1 HETATM 15 O O15 GQJ . . . B 2 4.99 22.069 1.75 0.44 29.18 ? O15 GQJ 401 A 1 HETATM 16 O O16 GQJ . . . B 2 7.468 22.584 2.848 0.44 33.35 ? O16 GQJ 401 A 1 HETATM 17 O O17 GQJ . . . B 2 8.865 24.968 1.782 0.44 35.46 ? O17 GQJ 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #