data_5R55
#
_model_server_result.job_id            YqsdB_R_jrAb5AqpeFcvNQ 
_model_server_result.datetime_utc      '2024-11-07 13:18:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          5r55 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    5R55 
#
_exptl.entry_id    5R55 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.168 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-methyl-1-pyridin-4-yl-methanamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            5R55 
_cell.length_a            49.72 
_cell.length_b            52.37 
_cell.length_c            101.89 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 5R55 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C7 H10 N2' 
_chem_comp.formula_weight    122.168 
_chem_comp.id                RYP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-methyl-1-pyridin-4-yl-methanamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C01 N02 RYP sing 286 n n 
N02 C03 RYP sing 287 n n 
C03 C04 RYP sing 288 n n 
C04 C09 RYP doub 289 n y 
C04 C05 RYP sing 290 n y 
C09 C08 RYP sing 291 n y 
C05 C06 RYP doub 292 n y 
C08 N07 RYP doub 293 n y 
C06 N07 RYP sing 294 n y 
C01 H1 RYP sing 295 n n 
C01 H2 RYP sing 296 n n 
C01 H3 RYP sing 297 n n 
C03 H4 RYP sing 298 n n 
C03 H5 RYP sing 299 n n 
C05 H6 RYP sing 300 n n 
C06 H7 RYP sing 301 n n 
C08 H8 RYP sing 302 n n 
C09 H9 RYP sing 303 n n 
N02 H10 RYP sing 304 n n 
#
_atom_sites.entry_id                     5R55 
_atom_sites.fract_transf_matrix[1][1]    0.020113 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019095 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009815 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RYP A 1 401 401 RYP LIG . 
C 3 DMS A 1 402 1 DMS DMS . 
D 3 DMS A 1 403 2 DMS DMS . 
E 3 DMS A 1 404 3 DMS DMS . 
F 4 HOH A 1 501 147 HOH HOH . 
F 4 HOH A 2 502 158 HOH HOH . 
F 4 HOH A 3 503 112 HOH HOH . 
F 4 HOH A 4 504 65 HOH HOH . 
F 4 HOH A 5 505 157 HOH HOH . 
F 4 HOH A 6 506 156 HOH HOH . 
F 4 HOH A 7 507 93 HOH HOH . 
F 4 HOH A 8 508 132 HOH HOH . 
F 4 HOH A 9 509 62 HOH HOH . 
F 4 HOH A 10 510 107 HOH HOH . 
F 4 HOH A 11 511 138 HOH HOH . 
F 4 HOH A 12 512 145 HOH HOH . 
F 4 HOH A 13 513 37 HOH HOH . 
F 4 HOH A 14 514 116 HOH HOH . 
F 4 HOH A 15 515 141 HOH HOH . 
F 4 HOH A 16 516 99 HOH HOH . 
F 4 HOH A 17 517 56 HOH HOH . 
F 4 HOH A 18 518 40 HOH HOH . 
F 4 HOH A 19 519 90 HOH HOH . 
F 4 HOH A 20 520 82 HOH HOH . 
F 4 HOH A 21 521 50 HOH HOH . 
F 4 HOH A 22 522 83 HOH HOH . 
F 4 HOH A 23 523 45 HOH HOH . 
F 4 HOH A 24 524 1 HOH HOH . 
F 4 HOH A 25 525 75 HOH HOH . 
F 4 HOH A 26 526 47 HOH HOH . 
F 4 HOH A 27 527 34 HOH HOH . 
F 4 HOH A 28 528 74 HOH HOH . 
F 4 HOH A 29 529 146 HOH HOH . 
F 4 HOH A 30 530 61 HOH HOH . 
F 4 HOH A 31 531 125 HOH HOH . 
F 4 HOH A 32 532 3 HOH HOH . 
F 4 HOH A 33 533 120 HOH HOH . 
F 4 HOH A 34 534 28 HOH HOH . 
F 4 HOH A 35 535 41 HOH HOH . 
F 4 HOH A 36 536 115 HOH HOH . 
F 4 HOH A 37 537 13 HOH HOH . 
F 4 HOH A 38 538 71 HOH HOH . 
F 4 HOH A 39 539 123 HOH HOH . 
F 4 HOH A 40 540 29 HOH HOH . 
F 4 HOH A 41 541 91 HOH HOH . 
F 4 HOH A 42 542 6 HOH HOH . 
F 4 HOH A 43 543 102 HOH HOH . 
F 4 HOH A 44 544 21 HOH HOH . 
F 4 HOH A 45 545 137 HOH HOH . 
F 4 HOH A 46 546 84 HOH HOH . 
F 4 HOH A 47 547 134 HOH HOH . 
F 4 HOH A 48 548 58 HOH HOH . 
F 4 HOH A 49 549 2 HOH HOH . 
F 4 HOH A 50 550 88 HOH HOH . 
F 4 HOH A 51 551 8 HOH HOH . 
F 4 HOH A 52 552 72 HOH HOH . 
F 4 HOH A 53 553 5 HOH HOH . 
F 4 HOH A 54 554 129 HOH HOH . 
F 4 HOH A 55 555 63 HOH HOH . 
F 4 HOH A 56 556 111 HOH HOH . 
F 4 HOH A 57 557 10 HOH HOH . 
F 4 HOH A 58 558 143 HOH HOH . 
F 4 HOH A 59 559 96 HOH HOH . 
F 4 HOH A 60 560 127 HOH HOH . 
F 4 HOH A 61 561 57 HOH HOH . 
F 4 HOH A 62 562 24 HOH HOH . 
F 4 HOH A 63 563 130 HOH HOH . 
F 4 HOH A 64 564 30 HOH HOH . 
F 4 HOH A 65 565 19 HOH HOH . 
F 4 HOH A 66 566 160 HOH HOH . 
F 4 HOH A 67 567 73 HOH HOH . 
F 4 HOH A 68 568 14 HOH HOH . 
F 4 HOH A 69 569 133 HOH HOH . 
F 4 HOH A 70 570 117 HOH HOH . 
F 4 HOH A 71 571 27 HOH HOH . 
F 4 HOH A 72 572 9 HOH HOH . 
F 4 HOH A 73 573 55 HOH HOH . 
F 4 HOH A 74 574 105 HOH HOH . 
F 4 HOH A 75 575 23 HOH HOH . 
F 4 HOH A 76 576 36 HOH HOH . 
F 4 HOH A 77 577 38 HOH HOH . 
F 4 HOH A 78 578 66 HOH HOH . 
F 4 HOH A 79 579 113 HOH HOH . 
F 4 HOH A 80 580 11 HOH HOH . 
F 4 HOH A 81 581 4 HOH HOH . 
F 4 HOH A 82 582 67 HOH HOH . 
F 4 HOH A 83 583 86 HOH HOH . 
F 4 HOH A 84 584 12 HOH HOH . 
F 4 HOH A 85 585 39 HOH HOH . 
F 4 HOH A 86 586 114 HOH HOH . 
F 4 HOH A 87 587 118 HOH HOH . 
F 4 HOH A 88 588 31 HOH HOH . 
F 4 HOH A 89 589 97 HOH HOH . 
F 4 HOH A 90 590 124 HOH HOH . 
F 4 HOH A 91 591 60 HOH HOH . 
F 4 HOH A 92 592 94 HOH HOH . 
F 4 HOH A 93 593 15 HOH HOH . 
F 4 HOH A 94 594 135 HOH HOH . 
F 4 HOH A 95 595 100 HOH HOH . 
F 4 HOH A 96 596 148 HOH HOH . 
F 4 HOH A 97 597 42 HOH HOH . 
F 4 HOH A 98 598 68 HOH HOH . 
F 4 HOH A 99 599 87 HOH HOH . 
F 4 HOH A 100 600 155 HOH HOH . 
F 4 HOH A 101 601 51 HOH HOH . 
F 4 HOH A 102 602 121 HOH HOH . 
F 4 HOH A 103 603 101 HOH HOH . 
F 4 HOH A 104 604 85 HOH HOH . 
F 4 HOH A 105 605 98 HOH HOH . 
F 4 HOH A 106 606 152 HOH HOH . 
F 4 HOH A 107 607 18 HOH HOH . 
F 4 HOH A 108 608 46 HOH HOH . 
F 4 HOH A 109 609 59 HOH HOH . 
F 4 HOH A 110 610 77 HOH HOH . 
F 4 HOH A 111 611 44 HOH HOH . 
F 4 HOH A 112 612 43 HOH HOH . 
F 4 HOH A 113 613 33 HOH HOH . 
F 4 HOH A 114 614 20 HOH HOH . 
F 4 HOH A 115 615 126 HOH HOH . 
F 4 HOH A 116 616 153 HOH HOH . 
F 4 HOH A 117 617 7 HOH HOH . 
F 4 HOH A 118 618 95 HOH HOH . 
F 4 HOH A 119 619 25 HOH HOH . 
F 4 HOH A 120 620 128 HOH HOH . 
F 4 HOH A 121 621 154 HOH HOH . 
F 4 HOH A 122 622 136 HOH HOH . 
F 4 HOH A 123 623 119 HOH HOH . 
F 4 HOH A 124 624 131 HOH HOH . 
F 4 HOH A 125 625 150 HOH HOH . 
F 4 HOH A 126 626 26 HOH HOH . 
F 4 HOH A 127 627 103 HOH HOH . 
F 4 HOH A 128 628 144 HOH HOH . 
F 4 HOH A 129 629 35 HOH HOH . 
F 4 HOH A 130 630 49 HOH HOH . 
F 4 HOH A 131 631 122 HOH HOH . 
F 4 HOH A 132 632 22 HOH HOH . 
F 4 HOH A 133 633 106 HOH HOH . 
F 4 HOH A 134 634 32 HOH HOH . 
F 4 HOH A 135 635 104 HOH HOH . 
F 4 HOH A 136 636 108 HOH HOH . 
F 4 HOH A 137 637 92 HOH HOH . 
F 4 HOH A 138 638 149 HOH HOH . 
F 4 HOH A 139 639 48 HOH HOH . 
F 4 HOH A 140 640 80 HOH HOH . 
F 4 HOH A 141 641 70 HOH HOH . 
F 4 HOH A 142 642 142 HOH HOH . 
F 4 HOH A 143 643 89 HOH HOH . 
F 4 HOH A 144 644 76 HOH HOH . 
F 4 HOH A 145 645 54 HOH HOH . 
F 4 HOH A 146 646 151 HOH HOH . 
F 4 HOH A 147 647 17 HOH HOH . 
F 4 HOH A 148 648 81 HOH HOH . 
F 4 HOH A 149 649 16 HOH HOH . 
F 4 HOH A 150 650 64 HOH HOH . 
F 4 HOH A 151 651 159 HOH HOH . 
F 4 HOH A 152 652 79 HOH HOH . 
F 4 HOH A 153 653 140 HOH HOH . 
F 4 HOH A 154 654 53 HOH HOH . 
F 4 HOH A 155 655 162 HOH HOH . 
F 4 HOH A 156 656 161 HOH HOH . 
F 4 HOH A 157 657 109 HOH HOH . 
F 4 HOH A 158 658 110 HOH HOH . 
F 4 HOH A 159 659 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 RYP . . . B 2 14.748 19.633 6.431 0.4 24.5 ? C01 RYP 401 A 1 
HETATM 2 C C03 RYP . . . B 2 14.037 19.316 8.737 0.4 22.73 ? C03 RYP 401 A 1 
HETATM 3 C C04 RYP . . . B 2 14.557 20.297 9.869 0.4 21.54 ? C04 RYP 401 A 1 
HETATM 4 C C05 RYP . . . B 2 15.455 19.882 10.796 0.4 21.14 ? C05 RYP 401 A 1 
HETATM 5 C C06 RYP . . . B 2 15.884 20.798 11.768 0.4 20.75 ? C06 RYP 401 A 1 
HETATM 6 C C08 RYP . . . B 2 14.575 22.408 10.901 0.4 19.36 ? C08 RYP 401 A 1 
HETATM 7 C C09 RYP . . . B 2 14.107 21.566 9.896 0.4 20.7 ? C09 RYP 401 A 1 
HETATM 8 N N02 RYP . . . B 2 15.089 19.086 7.687 0.4 23.48 1 N02 RYP 401 A 1 
HETATM 9 N N07 RYP . . . B 2 15.43 22.016 11.774 0.4 19.99 ? N07 RYP 401 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#