data_5R55 # _model_server_result.job_id d58l5Q8DsnZB8txhdzEEag _model_server_result.datetime_utc '2024-11-07 12:40:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r55 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 5R55 # _exptl.entry_id 5R55 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R55 _cell.length_a 49.72 _cell.length_b 52.37 _cell.length_c 101.89 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R55 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5R55 _atom_sites.fract_transf_matrix[1][1] 0.020113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019095 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RYP A 1 401 401 RYP LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 4 HOH A 1 501 147 HOH HOH . F 4 HOH A 2 502 158 HOH HOH . F 4 HOH A 3 503 112 HOH HOH . F 4 HOH A 4 504 65 HOH HOH . F 4 HOH A 5 505 157 HOH HOH . F 4 HOH A 6 506 156 HOH HOH . F 4 HOH A 7 507 93 HOH HOH . F 4 HOH A 8 508 132 HOH HOH . F 4 HOH A 9 509 62 HOH HOH . F 4 HOH A 10 510 107 HOH HOH . F 4 HOH A 11 511 138 HOH HOH . F 4 HOH A 12 512 145 HOH HOH . F 4 HOH A 13 513 37 HOH HOH . F 4 HOH A 14 514 116 HOH HOH . F 4 HOH A 15 515 141 HOH HOH . F 4 HOH A 16 516 99 HOH HOH . F 4 HOH A 17 517 56 HOH HOH . F 4 HOH A 18 518 40 HOH HOH . F 4 HOH A 19 519 90 HOH HOH . F 4 HOH A 20 520 82 HOH HOH . F 4 HOH A 21 521 50 HOH HOH . F 4 HOH A 22 522 83 HOH HOH . F 4 HOH A 23 523 45 HOH HOH . F 4 HOH A 24 524 1 HOH HOH . F 4 HOH A 25 525 75 HOH HOH . F 4 HOH A 26 526 47 HOH HOH . F 4 HOH A 27 527 34 HOH HOH . F 4 HOH A 28 528 74 HOH HOH . F 4 HOH A 29 529 146 HOH HOH . F 4 HOH A 30 530 61 HOH HOH . F 4 HOH A 31 531 125 HOH HOH . F 4 HOH A 32 532 3 HOH HOH . F 4 HOH A 33 533 120 HOH HOH . F 4 HOH A 34 534 28 HOH HOH . F 4 HOH A 35 535 41 HOH HOH . F 4 HOH A 36 536 115 HOH HOH . F 4 HOH A 37 537 13 HOH HOH . F 4 HOH A 38 538 71 HOH HOH . F 4 HOH A 39 539 123 HOH HOH . F 4 HOH A 40 540 29 HOH HOH . F 4 HOH A 41 541 91 HOH HOH . F 4 HOH A 42 542 6 HOH HOH . F 4 HOH A 43 543 102 HOH HOH . F 4 HOH A 44 544 21 HOH HOH . F 4 HOH A 45 545 137 HOH HOH . F 4 HOH A 46 546 84 HOH HOH . F 4 HOH A 47 547 134 HOH HOH . F 4 HOH A 48 548 58 HOH HOH . F 4 HOH A 49 549 2 HOH HOH . F 4 HOH A 50 550 88 HOH HOH . F 4 HOH A 51 551 8 HOH HOH . F 4 HOH A 52 552 72 HOH HOH . F 4 HOH A 53 553 5 HOH HOH . F 4 HOH A 54 554 129 HOH HOH . F 4 HOH A 55 555 63 HOH HOH . F 4 HOH A 56 556 111 HOH HOH . F 4 HOH A 57 557 10 HOH HOH . F 4 HOH A 58 558 143 HOH HOH . F 4 HOH A 59 559 96 HOH HOH . F 4 HOH A 60 560 127 HOH HOH . F 4 HOH A 61 561 57 HOH HOH . F 4 HOH A 62 562 24 HOH HOH . F 4 HOH A 63 563 130 HOH HOH . F 4 HOH A 64 564 30 HOH HOH . F 4 HOH A 65 565 19 HOH HOH . F 4 HOH A 66 566 160 HOH HOH . F 4 HOH A 67 567 73 HOH HOH . F 4 HOH A 68 568 14 HOH HOH . F 4 HOH A 69 569 133 HOH HOH . F 4 HOH A 70 570 117 HOH HOH . F 4 HOH A 71 571 27 HOH HOH . F 4 HOH A 72 572 9 HOH HOH . F 4 HOH A 73 573 55 HOH HOH . F 4 HOH A 74 574 105 HOH HOH . F 4 HOH A 75 575 23 HOH HOH . F 4 HOH A 76 576 36 HOH HOH . F 4 HOH A 77 577 38 HOH HOH . F 4 HOH A 78 578 66 HOH HOH . F 4 HOH A 79 579 113 HOH HOH . F 4 HOH A 80 580 11 HOH HOH . F 4 HOH A 81 581 4 HOH HOH . F 4 HOH A 82 582 67 HOH HOH . F 4 HOH A 83 583 86 HOH HOH . F 4 HOH A 84 584 12 HOH HOH . F 4 HOH A 85 585 39 HOH HOH . F 4 HOH A 86 586 114 HOH HOH . F 4 HOH A 87 587 118 HOH HOH . F 4 HOH A 88 588 31 HOH HOH . F 4 HOH A 89 589 97 HOH HOH . F 4 HOH A 90 590 124 HOH HOH . F 4 HOH A 91 591 60 HOH HOH . F 4 HOH A 92 592 94 HOH HOH . F 4 HOH A 93 593 15 HOH HOH . F 4 HOH A 94 594 135 HOH HOH . F 4 HOH A 95 595 100 HOH HOH . F 4 HOH A 96 596 148 HOH HOH . F 4 HOH A 97 597 42 HOH HOH . F 4 HOH A 98 598 68 HOH HOH . F 4 HOH A 99 599 87 HOH HOH . F 4 HOH A 100 600 155 HOH HOH . F 4 HOH A 101 601 51 HOH HOH . F 4 HOH A 102 602 121 HOH HOH . F 4 HOH A 103 603 101 HOH HOH . F 4 HOH A 104 604 85 HOH HOH . F 4 HOH A 105 605 98 HOH HOH . F 4 HOH A 106 606 152 HOH HOH . F 4 HOH A 107 607 18 HOH HOH . F 4 HOH A 108 608 46 HOH HOH . F 4 HOH A 109 609 59 HOH HOH . F 4 HOH A 110 610 77 HOH HOH . F 4 HOH A 111 611 44 HOH HOH . F 4 HOH A 112 612 43 HOH HOH . F 4 HOH A 113 613 33 HOH HOH . F 4 HOH A 114 614 20 HOH HOH . F 4 HOH A 115 615 126 HOH HOH . F 4 HOH A 116 616 153 HOH HOH . F 4 HOH A 117 617 7 HOH HOH . F 4 HOH A 118 618 95 HOH HOH . F 4 HOH A 119 619 25 HOH HOH . F 4 HOH A 120 620 128 HOH HOH . F 4 HOH A 121 621 154 HOH HOH . F 4 HOH A 122 622 136 HOH HOH . F 4 HOH A 123 623 119 HOH HOH . F 4 HOH A 124 624 131 HOH HOH . F 4 HOH A 125 625 150 HOH HOH . F 4 HOH A 126 626 26 HOH HOH . F 4 HOH A 127 627 103 HOH HOH . F 4 HOH A 128 628 144 HOH HOH . F 4 HOH A 129 629 35 HOH HOH . F 4 HOH A 130 630 49 HOH HOH . F 4 HOH A 131 631 122 HOH HOH . F 4 HOH A 132 632 22 HOH HOH . F 4 HOH A 133 633 106 HOH HOH . F 4 HOH A 134 634 32 HOH HOH . F 4 HOH A 135 635 104 HOH HOH . F 4 HOH A 136 636 108 HOH HOH . F 4 HOH A 137 637 92 HOH HOH . F 4 HOH A 138 638 149 HOH HOH . F 4 HOH A 139 639 48 HOH HOH . F 4 HOH A 140 640 80 HOH HOH . F 4 HOH A 141 641 70 HOH HOH . F 4 HOH A 142 642 142 HOH HOH . F 4 HOH A 143 643 89 HOH HOH . F 4 HOH A 144 644 76 HOH HOH . F 4 HOH A 145 645 54 HOH HOH . F 4 HOH A 146 646 151 HOH HOH . F 4 HOH A 147 647 17 HOH HOH . F 4 HOH A 148 648 81 HOH HOH . F 4 HOH A 149 649 16 HOH HOH . F 4 HOH A 150 650 64 HOH HOH . F 4 HOH A 151 651 159 HOH HOH . F 4 HOH A 152 652 79 HOH HOH . F 4 HOH A 153 653 140 HOH HOH . F 4 HOH A 154 654 53 HOH HOH . F 4 HOH A 155 655 162 HOH HOH . F 4 HOH A 156 656 161 HOH HOH . F 4 HOH A 157 657 109 HOH HOH . F 4 HOH A 158 658 110 HOH HOH . F 4 HOH A 159 659 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . E 3 15.553 54.428 3.34 1 52.98 ? S DMS 404 A 1 HETATM 2 O O DMS . . . E 3 15.828 54.447 4.837 1 66.51 ? O DMS 404 A 1 HETATM 3 C C1 DMS . . . E 3 13.849 54.076 3.174 1 64.39 ? C1 DMS 404 A 1 HETATM 4 C C2 DMS . . . E 3 15.465 56.12 2.849 1 58.53 ? C2 DMS 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #