data_5R56 # _model_server_result.job_id E-r1Vpu1bqiR4gEhuFU55w _model_server_result.datetime_utc '2024-11-26 01:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 5R56 # _exptl.entry_id 5R56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R56 _cell.length_a 49.59 _cell.length_b 52.33 _cell.length_c 101.56 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 5R56 _atom_sites.fract_transf_matrix[1][1] 0.020165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S07 A 1 401 401 S07 LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 3 DMS A 1 406 5 DMS DMS . H 3 DMS A 1 407 6 DMS DMS . I 4 HOH A 1 501 147 HOH HOH . I 4 HOH A 2 502 131 HOH HOH . I 4 HOH A 3 503 158 HOH HOH . I 4 HOH A 4 504 65 HOH HOH . I 4 HOH A 5 505 157 HOH HOH . I 4 HOH A 6 506 156 HOH HOH . I 4 HOH A 7 507 93 HOH HOH . I 4 HOH A 8 508 141 HOH HOH . I 4 HOH A 9 509 112 HOH HOH . I 4 HOH A 10 510 75 HOH HOH . I 4 HOH A 11 511 146 HOH HOH . I 4 HOH A 12 512 164 HOH HOH . I 4 HOH A 13 513 62 HOH HOH . I 4 HOH A 14 514 145 HOH HOH . I 4 HOH A 15 515 116 HOH HOH . I 4 HOH A 16 516 138 HOH HOH . I 4 HOH A 17 517 50 HOH HOH . I 4 HOH A 18 518 45 HOH HOH . I 4 HOH A 19 519 82 HOH HOH . I 4 HOH A 20 520 125 HOH HOH . I 4 HOH A 21 521 121 HOH HOH . I 4 HOH A 22 522 63 HOH HOH . I 4 HOH A 23 523 90 HOH HOH . I 4 HOH A 24 524 37 HOH HOH . I 4 HOH A 25 525 102 HOH HOH . I 4 HOH A 26 526 143 HOH HOH . I 4 HOH A 27 527 61 HOH HOH . I 4 HOH A 28 528 129 HOH HOH . I 4 HOH A 29 529 56 HOH HOH . I 4 HOH A 30 530 58 HOH HOH . I 4 HOH A 31 531 1 HOH HOH . I 4 HOH A 32 532 20 HOH HOH . I 4 HOH A 33 533 3 HOH HOH . I 4 HOH A 34 534 71 HOH HOH . I 4 HOH A 35 535 40 HOH HOH . I 4 HOH A 36 536 120 HOH HOH . I 4 HOH A 37 537 111 HOH HOH . I 4 HOH A 38 538 69 HOH HOH . I 4 HOH A 39 539 13 HOH HOH . I 4 HOH A 40 540 57 HOH HOH . I 4 HOH A 41 541 21 HOH HOH . I 4 HOH A 42 542 47 HOH HOH . I 4 HOH A 43 543 132 HOH HOH . I 4 HOH A 44 544 99 HOH HOH . I 4 HOH A 45 545 114 HOH HOH . I 4 HOH A 46 546 88 HOH HOH . I 4 HOH A 47 547 115 HOH HOH . I 4 HOH A 48 548 2 HOH HOH . I 4 HOH A 49 549 46 HOH HOH . I 4 HOH A 50 550 101 HOH HOH . I 4 HOH A 51 551 137 HOH HOH . I 4 HOH A 52 552 19 HOH HOH . I 4 HOH A 53 553 163 HOH HOH . I 4 HOH A 54 554 91 HOH HOH . I 4 HOH A 55 555 14 HOH HOH . I 4 HOH A 56 556 27 HOH HOH . I 4 HOH A 57 557 48 HOH HOH . I 4 HOH A 58 558 84 HOH HOH . I 4 HOH A 59 559 6 HOH HOH . I 4 HOH A 60 560 80 HOH HOH . I 4 HOH A 61 561 24 HOH HOH . I 4 HOH A 62 562 30 HOH HOH . I 4 HOH A 63 563 160 HOH HOH . I 4 HOH A 64 564 41 HOH HOH . I 4 HOH A 65 565 42 HOH HOH . I 4 HOH A 66 566 73 HOH HOH . I 4 HOH A 67 567 10 HOH HOH . I 4 HOH A 68 568 148 HOH HOH . I 4 HOH A 69 569 127 HOH HOH . I 4 HOH A 70 570 83 HOH HOH . I 4 HOH A 71 571 36 HOH HOH . I 4 HOH A 72 572 15 HOH HOH . I 4 HOH A 73 573 72 HOH HOH . I 4 HOH A 74 574 22 HOH HOH . I 4 HOH A 75 575 98 HOH HOH . I 4 HOH A 76 576 5 HOH HOH . I 4 HOH A 77 577 94 HOH HOH . I 4 HOH A 78 578 55 HOH HOH . I 4 HOH A 79 579 139 HOH HOH . I 4 HOH A 80 580 12 HOH HOH . I 4 HOH A 81 581 29 HOH HOH . I 4 HOH A 82 582 153 HOH HOH . I 4 HOH A 83 583 60 HOH HOH . I 4 HOH A 84 584 43 HOH HOH . I 4 HOH A 85 585 122 HOH HOH . I 4 HOH A 86 586 18 HOH HOH . I 4 HOH A 87 587 97 HOH HOH . I 4 HOH A 88 588 117 HOH HOH . I 4 HOH A 89 589 85 HOH HOH . I 4 HOH A 90 590 49 HOH HOH . I 4 HOH A 91 591 8 HOH HOH . I 4 HOH A 92 592 38 HOH HOH . I 4 HOH A 93 593 100 HOH HOH . I 4 HOH A 94 594 96 HOH HOH . I 4 HOH A 95 595 118 HOH HOH . I 4 HOH A 96 596 39 HOH HOH . I 4 HOH A 97 597 31 HOH HOH . I 4 HOH A 98 598 44 HOH HOH . I 4 HOH A 99 599 107 HOH HOH . I 4 HOH A 100 600 155 HOH HOH . I 4 HOH A 101 601 154 HOH HOH . I 4 HOH A 102 602 86 HOH HOH . I 4 HOH A 103 603 4 HOH HOH . I 4 HOH A 104 604 113 HOH HOH . I 4 HOH A 105 605 34 HOH HOH . I 4 HOH A 106 606 9 HOH HOH . I 4 HOH A 107 607 16 HOH HOH . I 4 HOH A 108 608 59 HOH HOH . I 4 HOH A 109 609 11 HOH HOH . I 4 HOH A 110 610 130 HOH HOH . I 4 HOH A 111 611 68 HOH HOH . I 4 HOH A 112 612 74 HOH HOH . I 4 HOH A 113 613 51 HOH HOH . I 4 HOH A 114 614 87 HOH HOH . I 4 HOH A 115 615 152 HOH HOH . I 4 HOH A 116 616 67 HOH HOH . I 4 HOH A 117 617 23 HOH HOH . I 4 HOH A 118 618 166 HOH HOH . I 4 HOH A 119 619 150 HOH HOH . I 4 HOH A 120 620 66 HOH HOH . I 4 HOH A 121 621 106 HOH HOH . I 4 HOH A 122 622 124 HOH HOH . I 4 HOH A 123 623 165 HOH HOH . I 4 HOH A 124 624 25 HOH HOH . I 4 HOH A 125 625 128 HOH HOH . I 4 HOH A 126 626 92 HOH HOH . I 4 HOH A 127 627 26 HOH HOH . I 4 HOH A 128 628 133 HOH HOH . I 4 HOH A 129 629 70 HOH HOH . I 4 HOH A 130 630 33 HOH HOH . I 4 HOH A 131 631 119 HOH HOH . I 4 HOH A 132 632 144 HOH HOH . I 4 HOH A 133 633 7 HOH HOH . I 4 HOH A 134 634 108 HOH HOH . I 4 HOH A 135 635 35 HOH HOH . I 4 HOH A 136 636 126 HOH HOH . I 4 HOH A 137 637 123 HOH HOH . I 4 HOH A 138 638 89 HOH HOH . I 4 HOH A 139 639 77 HOH HOH . I 4 HOH A 140 640 134 HOH HOH . I 4 HOH A 141 641 103 HOH HOH . I 4 HOH A 142 642 105 HOH HOH . I 4 HOH A 143 643 104 HOH HOH . I 4 HOH A 144 644 95 HOH HOH . I 4 HOH A 145 645 54 HOH HOH . I 4 HOH A 146 646 136 HOH HOH . I 4 HOH A 147 647 32 HOH HOH . I 4 HOH A 148 648 17 HOH HOH . I 4 HOH A 149 649 76 HOH HOH . I 4 HOH A 150 650 78 HOH HOH . I 4 HOH A 151 651 142 HOH HOH . I 4 HOH A 152 652 81 HOH HOH . I 4 HOH A 153 653 151 HOH HOH . I 4 HOH A 154 654 140 HOH HOH . I 4 HOH A 155 655 64 HOH HOH . I 4 HOH A 156 656 159 HOH HOH . I 4 HOH A 157 657 79 HOH HOH . I 4 HOH A 158 658 149 HOH HOH . I 4 HOH A 159 659 162 HOH HOH . I 4 HOH A 160 660 53 HOH HOH . I 4 HOH A 161 661 109 HOH HOH . I 4 HOH A 162 662 110 HOH HOH . I 4 HOH A 163 663 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 3 16.06 19.936 10.363 1 57.17 ? S DMS 405 A 1 HETATM 2 O O DMS . . . F 3 16.092 20.628 9.03 1 62.77 ? O DMS 405 A 1 HETATM 3 C C1 DMS . . . F 3 15.693 21.195 11.591 1 55.87 ? C1 DMS 405 A 1 HETATM 4 C C2 DMS . . . F 3 14.526 19.087 10.398 1 49.94 ? C2 DMS 405 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #