data_5R5C # _model_server_result.job_id i-EkiGfTUrcPGfxd7bgOzQ _model_server_result.datetime_utc '2024-11-22 17:14:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R5C # _exptl.entry_id 5R5C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 226.249 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(4-fluorophenyl)methyl]benzimidazole _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5C _cell.length_a 49.64 _cell.length_b 52.23 _cell.length_c 101.52 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H11 F N2' _chem_comp.formula_weight 226.249 _chem_comp.id GQP _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(4-fluorophenyl)methyl]benzimidazole _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 GQP doub 138 n y C1 C2 GQP sing 139 n y C6 C5 GQP sing 140 n y C2 C3 GQP doub 141 n y C5 C4 GQP doub 142 n y C5 N1 GQP sing 143 n y C3 C4 GQP sing 144 n y C4 N2 GQP sing 145 n y C11 C10 GQP doub 146 n y C11 C12 GQP sing 147 n y N1 C7 GQP doub 148 n y C10 C9 GQP sing 149 n y F1 C12 GQP sing 150 n n C12 C13 GQP doub 151 n y N2 C7 GQP sing 152 n y N2 C8 GQP sing 153 n n C9 C8 GQP sing 154 n n C9 C14 GQP doub 155 n y C13 C14 GQP sing 156 n y C6 H1 GQP sing 157 n n C7 H2 GQP sing 158 n n C8 H3 GQP sing 159 n n C8 H4 GQP sing 160 n n C10 H5 GQP sing 161 n n C13 H6 GQP sing 162 n n C1 H7 GQP sing 163 n n C11 H8 GQP sing 164 n n C14 H9 GQP sing 165 n n C2 H10 GQP sing 166 n n C3 H11 GQP sing 167 n n # _atom_sites.entry_id 5R5C _atom_sites.fract_transf_matrix[1][1] 0.020145 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GQP A 1 401 401 GQP LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 4 HOH A 1 501 147 HOH HOH . G 4 HOH A 2 502 158 HOH HOH . G 4 HOH A 3 503 65 HOH HOH . G 4 HOH A 4 504 157 HOH HOH . G 4 HOH A 5 505 131 HOH HOH . G 4 HOH A 6 506 75 HOH HOH . G 4 HOH A 7 507 141 HOH HOH . G 4 HOH A 8 508 116 HOH HOH . G 4 HOH A 9 509 62 HOH HOH . G 4 HOH A 10 510 112 HOH HOH . G 4 HOH A 11 511 156 HOH HOH . G 4 HOH A 12 512 93 HOH HOH . G 4 HOH A 13 513 56 HOH HOH . G 4 HOH A 14 514 117 HOH HOH . G 4 HOH A 15 515 82 HOH HOH . G 4 HOH A 16 516 115 HOH HOH . G 4 HOH A 17 517 37 HOH HOH . G 4 HOH A 18 518 146 HOH HOH . G 4 HOH A 19 519 137 HOH HOH . G 4 HOH A 20 520 145 HOH HOH . G 4 HOH A 21 521 111 HOH HOH . G 4 HOH A 22 522 83 HOH HOH . G 4 HOH A 23 523 50 HOH HOH . G 4 HOH A 24 524 61 HOH HOH . G 4 HOH A 25 525 129 HOH HOH . G 4 HOH A 26 526 71 HOH HOH . G 4 HOH A 27 527 99 HOH HOH . G 4 HOH A 28 528 45 HOH HOH . G 4 HOH A 29 529 121 HOH HOH . G 4 HOH A 30 530 125 HOH HOH . G 4 HOH A 31 531 40 HOH HOH . G 4 HOH A 32 532 90 HOH HOH . G 4 HOH A 33 533 160 HOH HOH . G 4 HOH A 34 534 13 HOH HOH . G 4 HOH A 35 535 138 HOH HOH . G 4 HOH A 36 536 29 HOH HOH . G 4 HOH A 37 537 120 HOH HOH . G 4 HOH A 38 538 58 HOH HOH . G 4 HOH A 39 539 60 HOH HOH . G 4 HOH A 40 540 87 HOH HOH . G 4 HOH A 41 541 3 HOH HOH . G 4 HOH A 42 542 113 HOH HOH . G 4 HOH A 43 543 91 HOH HOH . G 4 HOH A 44 544 1 HOH HOH . G 4 HOH A 45 545 34 HOH HOH . G 4 HOH A 46 546 21 HOH HOH . G 4 HOH A 47 547 57 HOH HOH . G 4 HOH A 48 548 41 HOH HOH . G 4 HOH A 49 549 63 HOH HOH . G 4 HOH A 50 550 55 HOH HOH . G 4 HOH A 51 551 132 HOH HOH . G 4 HOH A 52 552 46 HOH HOH . G 4 HOH A 53 553 47 HOH HOH . G 4 HOH A 54 554 2 HOH HOH . G 4 HOH A 55 555 102 HOH HOH . G 4 HOH A 56 556 69 HOH HOH . G 4 HOH A 57 557 19 HOH HOH . G 4 HOH A 58 558 27 HOH HOH . G 4 HOH A 59 559 84 HOH HOH . G 4 HOH A 60 560 73 HOH HOH . G 4 HOH A 61 561 20 HOH HOH . G 4 HOH A 62 562 143 HOH HOH . G 4 HOH A 63 563 94 HOH HOH . G 4 HOH A 64 564 86 HOH HOH . G 4 HOH A 65 565 39 HOH HOH . G 4 HOH A 66 566 85 HOH HOH . G 4 HOH A 67 567 148 HOH HOH . G 4 HOH A 68 568 23 HOH HOH . G 4 HOH A 69 569 8 HOH HOH . G 4 HOH A 70 570 136 HOH HOH . G 4 HOH A 71 571 6 HOH HOH . G 4 HOH A 72 572 31 HOH HOH . G 4 HOH A 73 573 88 HOH HOH . G 4 HOH A 74 574 43 HOH HOH . G 4 HOH A 75 575 5 HOH HOH . G 4 HOH A 76 576 98 HOH HOH . G 4 HOH A 77 577 153 HOH HOH . G 4 HOH A 78 578 49 HOH HOH . G 4 HOH A 79 579 14 HOH HOH . G 4 HOH A 80 580 97 HOH HOH . G 4 HOH A 81 581 30 HOH HOH . G 4 HOH A 82 582 105 HOH HOH . G 4 HOH A 83 583 144 HOH HOH . G 4 HOH A 84 584 10 HOH HOH . G 4 HOH A 85 585 128 HOH HOH . G 4 HOH A 86 586 18 HOH HOH . G 4 HOH A 87 587 15 HOH HOH . G 4 HOH A 88 588 114 HOH HOH . G 4 HOH A 89 589 24 HOH HOH . G 4 HOH A 90 590 28 HOH HOH . G 4 HOH A 91 591 48 HOH HOH . G 4 HOH A 92 592 38 HOH HOH . G 4 HOH A 93 593 67 HOH HOH . G 4 HOH A 94 594 139 HOH HOH . G 4 HOH A 95 595 74 HOH HOH . G 4 HOH A 96 596 9 HOH HOH . G 4 HOH A 97 597 118 HOH HOH . G 4 HOH A 98 598 72 HOH HOH . G 4 HOH A 99 599 103 HOH HOH . G 4 HOH A 100 600 35 HOH HOH . G 4 HOH A 101 601 101 HOH HOH . G 4 HOH A 102 602 152 HOH HOH . G 4 HOH A 103 603 42 HOH HOH . G 4 HOH A 104 604 59 HOH HOH . G 4 HOH A 105 605 134 HOH HOH . G 4 HOH A 106 606 12 HOH HOH . G 4 HOH A 107 607 122 HOH HOH . G 4 HOH A 108 608 22 HOH HOH . G 4 HOH A 109 609 4 HOH HOH . G 4 HOH A 110 610 36 HOH HOH . G 4 HOH A 111 611 106 HOH HOH . G 4 HOH A 112 612 70 HOH HOH . G 4 HOH A 113 613 150 HOH HOH . G 4 HOH A 114 614 11 HOH HOH . G 4 HOH A 115 615 130 HOH HOH . G 4 HOH A 116 616 26 HOH HOH . G 4 HOH A 117 617 133 HOH HOH . G 4 HOH A 118 618 44 HOH HOH . G 4 HOH A 119 619 100 HOH HOH . G 4 HOH A 120 620 107 HOH HOH . G 4 HOH A 121 621 25 HOH HOH . G 4 HOH A 122 622 96 HOH HOH . G 4 HOH A 123 623 124 HOH HOH . G 4 HOH A 124 624 33 HOH HOH . G 4 HOH A 125 625 127 HOH HOH . G 4 HOH A 126 626 77 HOH HOH . G 4 HOH A 127 627 126 HOH HOH . G 4 HOH A 128 628 51 HOH HOH . G 4 HOH A 129 629 92 HOH HOH . G 4 HOH A 130 630 66 HOH HOH . G 4 HOH A 131 631 155 HOH HOH . G 4 HOH A 132 632 123 HOH HOH . G 4 HOH A 133 633 119 HOH HOH . G 4 HOH A 134 634 104 HOH HOH . G 4 HOH A 135 635 68 HOH HOH . G 4 HOH A 136 636 16 HOH HOH . G 4 HOH A 137 637 7 HOH HOH . G 4 HOH A 138 638 154 HOH HOH . G 4 HOH A 139 639 76 HOH HOH . G 4 HOH A 140 640 17 HOH HOH . G 4 HOH A 141 641 32 HOH HOH . G 4 HOH A 142 642 80 HOH HOH . G 4 HOH A 143 643 78 HOH HOH . G 4 HOH A 144 644 54 HOH HOH . G 4 HOH A 145 645 95 HOH HOH . G 4 HOH A 146 646 108 HOH HOH . G 4 HOH A 147 647 89 HOH HOH . G 4 HOH A 148 648 151 HOH HOH . G 4 HOH A 149 649 64 HOH HOH . G 4 HOH A 150 650 140 HOH HOH . G 4 HOH A 151 651 79 HOH HOH . G 4 HOH A 152 652 159 HOH HOH . G 4 HOH A 153 653 81 HOH HOH . G 4 HOH A 154 654 142 HOH HOH . G 4 HOH A 155 655 149 HOH HOH . G 4 HOH A 156 656 162 HOH HOH . G 4 HOH A 157 657 53 HOH HOH . G 4 HOH A 158 658 109 HOH HOH . G 4 HOH A 159 659 110 HOH HOH . G 4 HOH A 160 660 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 GQP . . . B 2 10.908 21.711 -2.007 0.52 27.47 ? N1 GQP 401 A 1 HETATM 2 C C4 GQP . . . B 2 12.505 22.782 -0.803 0.52 27.21 ? C4 GQP 401 A 1 HETATM 3 C C5 GQP . . . B 2 12.049 22.502 -2.09 0.52 26.68 ? C5 GQP 401 A 1 HETATM 4 C C6 GQP . . . B 2 12.734 23.005 -3.193 0.52 27.19 ? C6 GQP 401 A 1 HETATM 5 C C7 GQP . . . B 2 10.691 21.539 -0.726 0.52 27.21 ? C7 GQP 401 A 1 HETATM 6 C C8 GQP . . . B 2 11.641 22.193 1.508 0.52 28.39 ? C8 GQP 401 A 1 HETATM 7 C C10 GQP . . . B 2 11.465 24.538 2.423 0.52 26.57 ? C10 GQP 401 A 1 HETATM 8 C C13 GQP . . . B 2 8.708 24.416 2.384 0.52 28.09 ? C13 GQP 401 A 1 HETATM 9 C C1 GQP . . . B 2 13.844 23.788 -2.968 0.52 27.13 ? C1 GQP 401 A 1 HETATM 10 C C11 GQP . . . B 2 10.721 25.634 2.832 0.52 27.6 ? C11 GQP 401 A 1 HETATM 11 C C12 GQP . . . B 2 9.355 25.544 2.801 0.52 27.92 ? C12 GQP 401 A 1 HETATM 12 C C14 GQP . . . B 2 9.462 23.335 1.965 0.52 28.85 ? C14 GQP 401 A 1 HETATM 13 C C2 GQP . . . B 2 14.295 24.053 -1.674 0.52 27.05 ? C2 GQP 401 A 1 HETATM 14 C C3 GQP . . . B 2 13.632 23.559 -0.574 0.52 26.88 ? C3 GQP 401 A 1 HETATM 15 C C9 GQP . . . B 2 10.843 23.375 2.004 0.52 27.8 ? C9 GQP 401 A 1 HETATM 16 F F1 GQP . . . B 2 8.608 26.607 3.202 0.52 27.49 ? F1 GQP 401 A 1 HETATM 17 N N2 GQP . . . B 2 11.624 22.14 0.051 0.52 27.67 ? N2 GQP 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 17 #