data_5R5D # _model_server_result.job_id 1FeNJsLvKKx71DmdxulEtw _model_server_result.datetime_utc '2024-11-22 07:07:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R5D # _exptl.entry_id 5R5D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.261 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-azanyl-4-(pyridin-3-ylmethylamino)benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5D _cell.length_a 49.51 _cell.length_b 52.27 _cell.length_c 101.63 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N3 O2' _chem_comp.formula_weight 243.261 _chem_comp.id S1J _chem_comp.mon_nstd_flag . _chem_comp.name '3-azanyl-4-(pyridin-3-ylmethylamino)benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C13 S1J doub 286 n n O1 C13 S1J sing 287 n n C13 C10 S1J sing 288 n n C10 C11 S1J doub 289 n y C10 C9 S1J sing 290 n y C11 C12 S1J sing 291 n y C9 C8 S1J doub 292 n y C12 N3 S1J sing 293 n n C12 C7 S1J doub 294 n y C8 C7 S1J sing 295 n y C7 N2 S1J sing 296 n n N2 C6 S1J sing 297 n n C6 C3 S1J sing 298 n n C3 C2 S1J doub 299 n y C3 C4 S1J sing 300 n y C2 C1 S1J sing 301 n y C4 N1 S1J doub 302 n y C1 C5 S1J doub 303 n y N1 C5 S1J sing 304 n y N3 H1 S1J sing 305 n n N3 H2 S1J sing 306 n n C4 H3 S1J sing 307 n n C5 H4 S1J sing 308 n n C6 H5 S1J sing 309 n n C6 H6 S1J sing 310 n n C8 H7 S1J sing 311 n n C1 H8 S1J sing 312 n n C11 H9 S1J sing 313 n n C2 H10 S1J sing 314 n n C9 H11 S1J sing 315 n n N2 H12 S1J sing 316 n n O1 H13 S1J sing 317 n n # _atom_sites.entry_id 5R5D _atom_sites.fract_transf_matrix[1][1] 0.020198 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019131 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00984 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S1J A 1 401 401 S1J LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 4 HOH A 1 501 147 HOH HOH . G 4 HOH A 2 502 158 HOH HOH . G 4 HOH A 3 503 65 HOH HOH . G 4 HOH A 4 504 75 HOH HOH . G 4 HOH A 5 505 157 HOH HOH . G 4 HOH A 6 506 141 HOH HOH . G 4 HOH A 7 507 156 HOH HOH . G 4 HOH A 8 508 112 HOH HOH . G 4 HOH A 9 509 93 HOH HOH . G 4 HOH A 10 510 145 HOH HOH . G 4 HOH A 11 511 116 HOH HOH . G 4 HOH A 12 512 131 HOH HOH . G 4 HOH A 13 513 62 HOH HOH . G 4 HOH A 14 514 70 HOH HOH . G 4 HOH A 15 515 125 HOH HOH . G 4 HOH A 16 516 90 HOH HOH . G 4 HOH A 17 517 146 HOH HOH . G 4 HOH A 18 518 45 HOH HOH . G 4 HOH A 19 519 121 HOH HOH . G 4 HOH A 20 520 138 HOH HOH . G 4 HOH A 21 521 102 HOH HOH . G 4 HOH A 22 522 37 HOH HOH . G 4 HOH A 23 523 61 HOH HOH . G 4 HOH A 24 524 40 HOH HOH . G 4 HOH A 25 525 56 HOH HOH . G 4 HOH A 26 526 50 HOH HOH . G 4 HOH A 27 527 58 HOH HOH . G 4 HOH A 28 528 111 HOH HOH . G 4 HOH A 29 529 99 HOH HOH . G 4 HOH A 30 530 3 HOH HOH . G 4 HOH A 31 531 69 HOH HOH . G 4 HOH A 32 532 82 HOH HOH . G 4 HOH A 33 533 47 HOH HOH . G 4 HOH A 34 534 160 HOH HOH . G 4 HOH A 35 535 34 HOH HOH . G 4 HOH A 36 536 71 HOH HOH . G 4 HOH A 37 537 120 HOH HOH . G 4 HOH A 38 538 1 HOH HOH . G 4 HOH A 39 539 57 HOH HOH . G 4 HOH A 40 540 63 HOH HOH . G 4 HOH A 41 541 129 HOH HOH . G 4 HOH A 42 542 73 HOH HOH . G 4 HOH A 43 543 84 HOH HOH . G 4 HOH A 44 544 117 HOH HOH . G 4 HOH A 45 545 83 HOH HOH . G 4 HOH A 46 546 137 HOH HOH . G 4 HOH A 47 547 24 HOH HOH . G 4 HOH A 48 548 88 HOH HOH . G 4 HOH A 49 549 14 HOH HOH . G 4 HOH A 50 550 143 HOH HOH . G 4 HOH A 51 551 30 HOH HOH . G 4 HOH A 52 552 29 HOH HOH . G 4 HOH A 53 553 2 HOH HOH . G 4 HOH A 54 554 96 HOH HOH . G 4 HOH A 55 555 13 HOH HOH . G 4 HOH A 56 556 85 HOH HOH . G 4 HOH A 57 557 139 HOH HOH . G 4 HOH A 58 558 55 HOH HOH . G 4 HOH A 59 559 132 HOH HOH . G 4 HOH A 60 560 21 HOH HOH . G 4 HOH A 61 561 91 HOH HOH . G 4 HOH A 62 562 115 HOH HOH . G 4 HOH A 63 563 148 HOH HOH . G 4 HOH A 64 564 27 HOH HOH . G 4 HOH A 65 565 136 HOH HOH . G 4 HOH A 66 566 5 HOH HOH . G 4 HOH A 67 567 35 HOH HOH . G 4 HOH A 68 568 114 HOH HOH . G 4 HOH A 69 569 41 HOH HOH . G 4 HOH A 70 570 49 HOH HOH . G 4 HOH A 71 571 19 HOH HOH . G 4 HOH A 72 572 42 HOH HOH . G 4 HOH A 73 573 154 HOH HOH . G 4 HOH A 74 574 15 HOH HOH . G 4 HOH A 75 575 28 HOH HOH . G 4 HOH A 76 576 87 HOH HOH . G 4 HOH A 77 577 8 HOH HOH . G 4 HOH A 78 578 39 HOH HOH . G 4 HOH A 79 579 6 HOH HOH . G 4 HOH A 80 580 23 HOH HOH . G 4 HOH A 81 581 97 HOH HOH . G 4 HOH A 82 582 101 HOH HOH . G 4 HOH A 83 583 94 HOH HOH . G 4 HOH A 84 584 98 HOH HOH . G 4 HOH A 85 585 100 HOH HOH . G 4 HOH A 86 586 46 HOH HOH . G 4 HOH A 87 587 4 HOH HOH . G 4 HOH A 88 588 10 HOH HOH . G 4 HOH A 89 589 36 HOH HOH . G 4 HOH A 90 590 122 HOH HOH . G 4 HOH A 91 591 18 HOH HOH . G 4 HOH A 92 592 9 HOH HOH . G 4 HOH A 93 593 105 HOH HOH . G 4 HOH A 94 594 38 HOH HOH . G 4 HOH A 95 595 133 HOH HOH . G 4 HOH A 96 596 72 HOH HOH . G 4 HOH A 97 597 43 HOH HOH . G 4 HOH A 98 598 12 HOH HOH . G 4 HOH A 99 599 107 HOH HOH . G 4 HOH A 100 600 86 HOH HOH . G 4 HOH A 101 601 153 HOH HOH . G 4 HOH A 102 602 118 HOH HOH . G 4 HOH A 103 603 103 HOH HOH . G 4 HOH A 104 604 31 HOH HOH . G 4 HOH A 105 605 127 HOH HOH . G 4 HOH A 106 606 66 HOH HOH . G 4 HOH A 107 607 67 HOH HOH . G 4 HOH A 108 608 22 HOH HOH . G 4 HOH A 109 609 20 HOH HOH . G 4 HOH A 110 610 144 HOH HOH . G 4 HOH A 111 611 113 HOH HOH . G 4 HOH A 112 612 59 HOH HOH . G 4 HOH A 113 613 106 HOH HOH . G 4 HOH A 114 614 16 HOH HOH . G 4 HOH A 115 615 74 HOH HOH . G 4 HOH A 116 616 152 HOH HOH . G 4 HOH A 117 617 51 HOH HOH . G 4 HOH A 118 618 44 HOH HOH . G 4 HOH A 119 619 123 HOH HOH . G 4 HOH A 120 620 124 HOH HOH . G 4 HOH A 121 621 68 HOH HOH . G 4 HOH A 122 622 77 HOH HOH . G 4 HOH A 123 623 135 HOH HOH . G 4 HOH A 124 624 26 HOH HOH . G 4 HOH A 125 625 128 HOH HOH . G 4 HOH A 126 626 11 HOH HOH . G 4 HOH A 127 627 150 HOH HOH . G 4 HOH A 128 628 25 HOH HOH . G 4 HOH A 129 629 54 HOH HOH . G 4 HOH A 130 630 130 HOH HOH . G 4 HOH A 131 631 48 HOH HOH . G 4 HOH A 132 632 89 HOH HOH . G 4 HOH A 133 633 60 HOH HOH . G 4 HOH A 134 634 33 HOH HOH . G 4 HOH A 135 635 104 HOH HOH . G 4 HOH A 136 636 155 HOH HOH . G 4 HOH A 137 637 7 HOH HOH . G 4 HOH A 138 638 119 HOH HOH . G 4 HOH A 139 639 92 HOH HOH . G 4 HOH A 140 640 126 HOH HOH . G 4 HOH A 141 641 95 HOH HOH . G 4 HOH A 142 642 32 HOH HOH . G 4 HOH A 143 643 108 HOH HOH . G 4 HOH A 144 644 78 HOH HOH . G 4 HOH A 145 645 76 HOH HOH . G 4 HOH A 146 646 80 HOH HOH . G 4 HOH A 147 647 142 HOH HOH . G 4 HOH A 148 648 17 HOH HOH . G 4 HOH A 149 649 134 HOH HOH . G 4 HOH A 150 650 151 HOH HOH . G 4 HOH A 151 651 159 HOH HOH . G 4 HOH A 152 652 79 HOH HOH . G 4 HOH A 153 653 64 HOH HOH . G 4 HOH A 154 654 140 HOH HOH . G 4 HOH A 155 655 149 HOH HOH . G 4 HOH A 156 656 81 HOH HOH . G 4 HOH A 157 657 162 HOH HOH . G 4 HOH A 158 658 53 HOH HOH . G 4 HOH A 159 659 109 HOH HOH . G 4 HOH A 160 660 110 HOH HOH . G 4 HOH A 161 661 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S1J . . . B 2 9.396 24.318 2.771 0.46 34.68 ? N1 S1J 401 A 1 HETATM 2 N N3 S1J . . . B 2 15.015 24.517 -0.817 0.46 31.55 ? N3 S1J 401 A 1 HETATM 3 C C4 S1J . . . B 2 10.317 23.385 2.514 0.46 34.89 ? C4 S1J 401 A 1 HETATM 4 C C5 S1J . . . B 2 9.793 25.588 2.857 0.46 35.62 ? C5 S1J 401 A 1 HETATM 5 C C6 S1J . . . B 2 12.66 22.572 2.048 0.46 35.3 ? C6 S1J 401 A 1 HETATM 6 C C7 S1J . . . B 2 13.225 22.943 -0.381 0.46 32.07 ? C7 S1J 401 A 1 HETATM 7 C C8 S1J . . . B 2 12.145 22.171 -0.883 0.46 31.71 ? C8 S1J 401 A 1 HETATM 8 C C10 S1J . . . B 2 12.56 23.01 -3.095 0.46 29.48 ? C10 S1J 401 A 1 HETATM 9 C C13 S1J . . . B 2 12.242 23.047 -4.567 0.46 29.85 ? C13 S1J 401 A 1 HETATM 10 C C1 S1J . . . B 2 11.105 25.962 2.696 0.46 35.63 ? C1 S1J 401 A 1 HETATM 11 C C11 S1J . . . B 2 13.623 23.767 -2.622 0.46 30.69 ? C11 S1J 401 A 1 HETATM 12 C C12 S1J . . . B 2 13.963 23.747 -1.27 0.46 31.4 ? C12 S1J 401 A 1 HETATM 13 C C2 S1J . . . B 2 12.046 24.988 2.435 0.46 36.29 ? C2 S1J 401 A 1 HETATM 14 C C3 S1J . . . B 2 11.652 23.67 2.334 0.46 35.27 ? C3 S1J 401 A 1 HETATM 15 C C9 S1J . . . B 2 11.83 22.212 -2.227 0.46 30.62 ? C9 S1J 401 A 1 HETATM 16 N N2 S1J . . . B 2 13.562 22.907 0.957 0.46 34.24 ? N2 S1J 401 A 1 HETATM 17 O O1 S1J . . . B 2 11.12 22.637 -4.947 0.46 30.63 ? O1 S1J 401 A 1 HETATM 18 O O2 S1J . . . B 2 13.139 23.466 -5.333 0.46 27.98 -1 O2 S1J 401 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 18 #