data_5R5G # _model_server_result.job_id JOc7kjVmdwVY5aGL1sHdzw _model_server_result.datetime_utc '2025-08-24 05:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R5G # _exptl.entry_id 5R5G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.218 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-[(2~{S})-1-ethanoyl-3-oxidanylidene-piperazin-2-yl]ethanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5G _cell.length_a 49.42 _cell.length_b 52.32 _cell.length_c 101.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H14 N2 O4' _chem_comp.formula_weight 214.218 _chem_comp.id S1M _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 2-[(2~{S})-1-ethanoyl-3-oxidanylidene-piperazin-2-yl]ethanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C5 S1M doub 286 n n C9 O4 S1M sing 287 n n C7 C8 S1M sing 288 n n C7 C6 S1M sing 289 n n C5 C6 S1M sing 290 n n C5 N2 S1M sing 291 n n O3 C8 S1M doub 292 n n C8 O4 S1M sing 293 n n C6 N1 S1M sing 294 n n N2 C4 S1M sing 295 n n C4 C3 S1M sing 296 n n N1 C3 S1M sing 297 n n N1 C2 S1M sing 298 n n C1 C2 S1M sing 299 n n C2 O1 S1M doub 300 n n C4 H1 S1M sing 301 n n C4 H2 S1M sing 302 n n C6 H3 S1M sing 303 n n C7 H4 S1M sing 304 n n C7 H5 S1M sing 305 n n C1 H6 S1M sing 306 n n C1 H7 S1M sing 307 n n C1 H8 S1M sing 308 n n C3 H9 S1M sing 309 n n C3 H10 S1M sing 310 n n C9 H11 S1M sing 311 n n C9 H12 S1M sing 312 n n C9 H13 S1M sing 313 n n N2 H14 S1M sing 314 n n # _atom_sites.entry_id 5R5G _atom_sites.fract_transf_matrix[1][1] 0.020235 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 S1M A 1 401 401 S1M LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 4 HOH A 1 501 147 HOH HOH . G 4 HOH A 2 502 158 HOH HOH . G 4 HOH A 3 503 156 HOH HOH . G 4 HOH A 4 504 141 HOH HOH . G 4 HOH A 5 505 75 HOH HOH . G 4 HOH A 6 506 65 HOH HOH . G 4 HOH A 7 507 157 HOH HOH . G 4 HOH A 8 508 62 HOH HOH . G 4 HOH A 9 509 113 HOH HOH . G 4 HOH A 10 510 93 HOH HOH . G 4 HOH A 11 511 37 HOH HOH . G 4 HOH A 12 512 56 HOH HOH . G 4 HOH A 13 513 112 HOH HOH . G 4 HOH A 14 514 45 HOH HOH . G 4 HOH A 15 515 116 HOH HOH . G 4 HOH A 16 516 40 HOH HOH . G 4 HOH A 17 517 58 HOH HOH . G 4 HOH A 18 518 99 HOH HOH . G 4 HOH A 19 519 111 HOH HOH . G 4 HOH A 20 520 82 HOH HOH . G 4 HOH A 21 521 46 HOH HOH . G 4 HOH A 22 522 102 HOH HOH . G 4 HOH A 23 523 120 HOH HOH . G 4 HOH A 24 524 57 HOH HOH . G 4 HOH A 25 525 34 HOH HOH . G 4 HOH A 26 526 21 HOH HOH . G 4 HOH A 27 527 88 HOH HOH . G 4 HOH A 28 528 19 HOH HOH . G 4 HOH A 29 529 29 HOH HOH . G 4 HOH A 30 530 24 HOH HOH . G 4 HOH A 31 531 125 HOH HOH . G 4 HOH A 32 532 145 HOH HOH . G 4 HOH A 33 533 61 HOH HOH . G 4 HOH A 34 534 115 HOH HOH . G 4 HOH A 35 535 138 HOH HOH . G 4 HOH A 36 536 1 HOH HOH . G 4 HOH A 37 537 47 HOH HOH . G 4 HOH A 38 538 63 HOH HOH . G 4 HOH A 39 539 73 HOH HOH . G 4 HOH A 40 540 71 HOH HOH . G 4 HOH A 41 541 74 HOH HOH . G 4 HOH A 42 542 121 HOH HOH . G 4 HOH A 43 543 13 HOH HOH . G 4 HOH A 44 544 143 HOH HOH . G 4 HOH A 45 545 160 HOH HOH . G 4 HOH A 46 546 129 HOH HOH . G 4 HOH A 47 547 146 HOH HOH . G 4 HOH A 48 548 55 HOH HOH . G 4 HOH A 49 549 132 HOH HOH . G 4 HOH A 50 550 3 HOH HOH . G 4 HOH A 51 551 94 HOH HOH . G 4 HOH A 52 552 84 HOH HOH . G 4 HOH A 53 553 87 HOH HOH . G 4 HOH A 54 554 2 HOH HOH . G 4 HOH A 55 555 86 HOH HOH . G 4 HOH A 56 556 50 HOH HOH . G 4 HOH A 57 557 136 HOH HOH . G 4 HOH A 58 558 35 HOH HOH . G 4 HOH A 59 559 148 HOH HOH . G 4 HOH A 60 560 154 HOH HOH . G 4 HOH A 61 561 100 HOH HOH . G 4 HOH A 62 562 72 HOH HOH . G 4 HOH A 63 563 131 HOH HOH . G 4 HOH A 64 564 96 HOH HOH . G 4 HOH A 65 565 14 HOH HOH . G 4 HOH A 66 566 59 HOH HOH . G 4 HOH A 67 567 8 HOH HOH . G 4 HOH A 68 568 83 HOH HOH . G 4 HOH A 69 569 103 HOH HOH . G 4 HOH A 70 570 137 HOH HOH . G 4 HOH A 71 571 134 HOH HOH . G 4 HOH A 72 572 39 HOH HOH . G 4 HOH A 73 573 85 HOH HOH . G 4 HOH A 74 574 43 HOH HOH . G 4 HOH A 75 575 101 HOH HOH . G 4 HOH A 76 576 36 HOH HOH . G 4 HOH A 77 577 153 HOH HOH . G 4 HOH A 78 578 27 HOH HOH . G 4 HOH A 79 579 97 HOH HOH . G 4 HOH A 80 580 30 HOH HOH . G 4 HOH A 81 581 49 HOH HOH . G 4 HOH A 82 582 139 HOH HOH . G 4 HOH A 83 583 41 HOH HOH . G 4 HOH A 84 584 5 HOH HOH . G 4 HOH A 85 585 114 HOH HOH . G 4 HOH A 86 586 10 HOH HOH . G 4 HOH A 87 587 18 HOH HOH . G 4 HOH A 88 588 42 HOH HOH . G 4 HOH A 89 589 9 HOH HOH . G 4 HOH A 90 590 38 HOH HOH . G 4 HOH A 91 591 90 HOH HOH . G 4 HOH A 92 592 105 HOH HOH . G 4 HOH A 93 593 28 HOH HOH . G 4 HOH A 94 594 4 HOH HOH . G 4 HOH A 95 595 23 HOH HOH . G 4 HOH A 96 596 98 HOH HOH . G 4 HOH A 97 597 91 HOH HOH . G 4 HOH A 98 598 107 HOH HOH . G 4 HOH A 99 599 144 HOH HOH . G 4 HOH A 100 600 70 HOH HOH . G 4 HOH A 101 601 12 HOH HOH . G 4 HOH A 102 602 66 HOH HOH . G 4 HOH A 103 603 69 HOH HOH . G 4 HOH A 104 604 15 HOH HOH . G 4 HOH A 105 605 89 HOH HOH . G 4 HOH A 106 606 152 HOH HOH . G 4 HOH A 107 607 6 HOH HOH . G 4 HOH A 108 608 133 HOH HOH . G 4 HOH A 109 609 127 HOH HOH . G 4 HOH A 110 610 118 HOH HOH . G 4 HOH A 111 611 22 HOH HOH . G 4 HOH A 112 612 122 HOH HOH . G 4 HOH A 113 613 16 HOH HOH . G 4 HOH A 114 614 130 HOH HOH . G 4 HOH A 115 615 44 HOH HOH . G 4 HOH A 116 616 31 HOH HOH . G 4 HOH A 117 617 51 HOH HOH . G 4 HOH A 118 618 77 HOH HOH . G 4 HOH A 119 619 150 HOH HOH . G 4 HOH A 120 620 67 HOH HOH . G 4 HOH A 121 621 128 HOH HOH . G 4 HOH A 122 622 123 HOH HOH . G 4 HOH A 123 623 25 HOH HOH . G 4 HOH A 124 624 104 HOH HOH . G 4 HOH A 125 625 80 HOH HOH . G 4 HOH A 126 626 11 HOH HOH . G 4 HOH A 127 627 20 HOH HOH . G 4 HOH A 128 628 33 HOH HOH . G 4 HOH A 129 629 7 HOH HOH . G 4 HOH A 130 630 106 HOH HOH . G 4 HOH A 131 631 54 HOH HOH . G 4 HOH A 132 632 60 HOH HOH . G 4 HOH A 133 633 124 HOH HOH . G 4 HOH A 134 634 68 HOH HOH . G 4 HOH A 135 635 119 HOH HOH . G 4 HOH A 136 636 155 HOH HOH . G 4 HOH A 137 637 92 HOH HOH . G 4 HOH A 138 638 26 HOH HOH . G 4 HOH A 139 639 32 HOH HOH . G 4 HOH A 140 640 95 HOH HOH . G 4 HOH A 141 641 78 HOH HOH . G 4 HOH A 142 642 108 HOH HOH . G 4 HOH A 143 643 48 HOH HOH . G 4 HOH A 144 644 126 HOH HOH . G 4 HOH A 145 645 76 HOH HOH . G 4 HOH A 146 646 117 HOH HOH . G 4 HOH A 147 647 142 HOH HOH . G 4 HOH A 148 648 17 HOH HOH . G 4 HOH A 149 649 151 HOH HOH . G 4 HOH A 150 650 159 HOH HOH . G 4 HOH A 151 651 64 HOH HOH . G 4 HOH A 152 652 81 HOH HOH . G 4 HOH A 153 653 140 HOH HOH . G 4 HOH A 154 654 149 HOH HOH . G 4 HOH A 155 655 79 HOH HOH . G 4 HOH A 156 656 162 HOH HOH . G 4 HOH A 157 657 161 HOH HOH . G 4 HOH A 158 658 53 HOH HOH . G 4 HOH A 159 659 109 HOH HOH . G 4 HOH A 160 660 110 HOH HOH . G 4 HOH A 161 661 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 S1M . . . B 2 6.202 20.342 -0.917 0.54 44.97 ? N1 S1M 401 A 1 HETATM 2 C C4 S1M . . . B 2 4.728 22.289 -0.943 0.54 42.43 ? C4 S1M 401 A 1 HETATM 3 C C5 S1M . . . B 2 5.133 20.906 -2.98 0.54 44.2 ? C5 S1M 401 A 1 HETATM 4 C C6 S1M . . . B 2 6.438 20.461 -2.362 0.54 46.48 ? C6 S1M 401 A 1 HETATM 5 C C7 S1M . . . B 2 7.022 19.218 -3.032 0.54 48.82 ? C7 S1M 401 A 1 HETATM 6 C C8 S1M . . . B 2 8.477 19.02 -2.726 0.54 51.22 ? C8 S1M 401 A 1 HETATM 7 C C1 S1M . . . B 2 5.617 17.955 -0.631 0.54 45.87 ? C1 S1M 401 A 1 HETATM 8 C C2 S1M . . . B 2 6.04 19.288 -0.083 0.54 46.34 ? C2 S1M 401 A 1 HETATM 9 C C3 S1M . . . B 2 5.98 21.671 -0.344 0.54 43.76 ? C3 S1M 401 A 1 HETATM 10 C C9 S1M . . . B 2 8.278 16.718 -3.29 0.54 49.09 ? C9 S1M 401 A 1 HETATM 11 N N2 S1M . . . B 2 4.379 21.697 -2.232 0.54 42.55 ? N2 S1M 401 A 1 HETATM 12 O O1 S1M . . . B 2 6.165 19.422 1.13 0.54 49.13 ? O1 S1M 401 A 1 HETATM 13 O O2 S1M . . . B 2 4.795 20.52 -4.106 0.54 41.04 ? O2 S1M 401 A 1 HETATM 14 O O3 S1M . . . B 2 9.306 19.886 -2.763 0.54 51.36 ? O3 S1M 401 A 1 HETATM 15 O O4 S1M . . . B 2 8.756 17.756 -2.396 0.54 50.35 ? O4 S1M 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #