data_5R5J # _model_server_result.job_id e-HntcBrEfDxfBXxoIjHww _model_server_result.datetime_utc '2025-01-10 08:06:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 5R5J # _exptl.entry_id 5R5J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.313 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-[(5-methylthiophen-2-yl)methylamino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5J _cell.length_a 49.7 _cell.length_b 52.23 _cell.length_c 101.88 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H13 N O2 S' _chem_comp.formula_weight 247.313 _chem_comp.id MH5 _chem_comp.mon_nstd_flag . _chem_comp.name '3-[(5-methylthiophen-2-yl)methylamino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 MH5 sing 246 n y C4 C5 MH5 doub 247 n y C3 C2 MH5 doub 248 n y C5 C6 MH5 sing 249 n n C5 S1 MH5 sing 250 n y C6 N1 MH5 sing 251 n n N1 C7 MH5 sing 252 n n C2 C1 MH5 sing 253 n n C2 S1 MH5 sing 254 n y C8 C7 MH5 doub 255 n y C8 C9 MH5 sing 256 n y C7 C12 MH5 sing 257 n y C9 C10 MH5 doub 258 n y C12 C11 MH5 doub 259 n y C10 C11 MH5 sing 260 n y C11 C13 MH5 sing 261 n n C13 O1 MH5 doub 262 n n C13 O2 MH5 sing 263 n n N1 H1 MH5 sing 264 n n C4 H2 MH5 sing 265 n n C6 H5 MH5 sing 266 n n C6 H6 MH5 sing 267 n n C8 H7 MH5 sing 268 n n C10 H8 MH5 sing 269 n n C1 H9 MH5 sing 270 n n C1 H10 MH5 sing 271 n n C1 H11 MH5 sing 272 n n C3 H13 MH5 sing 273 n n C9 H15 MH5 sing 274 n n C12 H16 MH5 sing 275 n n O2 H17 MH5 sing 276 n n # _atom_sites.entry_id 5R5J _atom_sites.fract_transf_matrix[1][1] 0.020121 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MH5 A 1 401 401 MH5 LIG . C 3 DMS A 1 402 1 DMS DMS . D 3 DMS A 1 403 2 DMS DMS . E 3 DMS A 1 404 3 DMS DMS . F 3 DMS A 1 405 4 DMS DMS . G 4 HOH A 1 501 158 HOH HOH . G 4 HOH A 2 502 147 HOH HOH . G 4 HOH A 3 503 65 HOH HOH . G 4 HOH A 4 504 40 HOH HOH . G 4 HOH A 5 505 112 HOH HOH . G 4 HOH A 6 506 75 HOH HOH . G 4 HOH A 7 507 136 HOH HOH . G 4 HOH A 8 508 113 HOH HOH . G 4 HOH A 9 509 146 HOH HOH . G 4 HOH A 10 510 93 HOH HOH . G 4 HOH A 11 511 37 HOH HOH . G 4 HOH A 12 512 117 HOH HOH . G 4 HOH A 13 513 116 HOH HOH . G 4 HOH A 14 514 74 HOH HOH . G 4 HOH A 15 515 45 HOH HOH . G 4 HOH A 16 516 57 HOH HOH . G 4 HOH A 17 517 131 HOH HOH . G 4 HOH A 18 518 30 HOH HOH . G 4 HOH A 19 519 73 HOH HOH . G 4 HOH A 20 520 157 HOH HOH . G 4 HOH A 21 521 61 HOH HOH . G 4 HOH A 22 522 13 HOH HOH . G 4 HOH A 23 523 99 HOH HOH . G 4 HOH A 24 524 55 HOH HOH . G 4 HOH A 25 525 72 HOH HOH . G 4 HOH A 26 526 127 HOH HOH . G 4 HOH A 27 527 129 HOH HOH . G 4 HOH A 28 528 34 HOH HOH . G 4 HOH A 29 529 156 HOH HOH . G 4 HOH A 30 530 50 HOH HOH . G 4 HOH A 31 531 123 HOH HOH . G 4 HOH A 32 532 87 HOH HOH . G 4 HOH A 33 533 88 HOH HOH . G 4 HOH A 34 534 62 HOH HOH . G 4 HOH A 35 535 58 HOH HOH . G 4 HOH A 36 536 8 HOH HOH . G 4 HOH A 37 537 19 HOH HOH . G 4 HOH A 38 538 39 HOH HOH . G 4 HOH A 39 539 153 HOH HOH . G 4 HOH A 40 540 3 HOH HOH . G 4 HOH A 41 541 132 HOH HOH . G 4 HOH A 42 542 83 HOH HOH . G 4 HOH A 43 543 120 HOH HOH . G 4 HOH A 44 544 6 HOH HOH . G 4 HOH A 45 545 154 HOH HOH . G 4 HOH A 46 546 141 HOH HOH . G 4 HOH A 47 547 43 HOH HOH . G 4 HOH A 48 548 47 HOH HOH . G 4 HOH A 49 549 69 HOH HOH . G 4 HOH A 50 550 125 HOH HOH . G 4 HOH A 51 551 91 HOH HOH . G 4 HOH A 52 552 29 HOH HOH . G 4 HOH A 53 553 137 HOH HOH . G 4 HOH A 54 554 63 HOH HOH . G 4 HOH A 55 555 138 HOH HOH . G 4 HOH A 56 556 1 HOH HOH . G 4 HOH A 57 557 82 HOH HOH . G 4 HOH A 58 558 71 HOH HOH . G 4 HOH A 59 559 31 HOH HOH . G 4 HOH A 60 560 59 HOH HOH . G 4 HOH A 61 561 27 HOH HOH . G 4 HOH A 62 562 111 HOH HOH . G 4 HOH A 63 563 148 HOH HOH . G 4 HOH A 64 564 14 HOH HOH . G 4 HOH A 65 565 38 HOH HOH . G 4 HOH A 66 566 150 HOH HOH . G 4 HOH A 67 567 42 HOH HOH . G 4 HOH A 68 568 46 HOH HOH . G 4 HOH A 69 569 49 HOH HOH . G 4 HOH A 70 570 114 HOH HOH . G 4 HOH A 71 571 118 HOH HOH . G 4 HOH A 72 572 18 HOH HOH . G 4 HOH A 73 573 2 HOH HOH . G 4 HOH A 74 574 23 HOH HOH . G 4 HOH A 75 575 143 HOH HOH . G 4 HOH A 76 576 9 HOH HOH . G 4 HOH A 77 577 24 HOH HOH . G 4 HOH A 78 578 21 HOH HOH . G 4 HOH A 79 579 139 HOH HOH . G 4 HOH A 80 580 5 HOH HOH . G 4 HOH A 81 581 41 HOH HOH . G 4 HOH A 82 582 134 HOH HOH . G 4 HOH A 83 583 28 HOH HOH . G 4 HOH A 84 584 4 HOH HOH . G 4 HOH A 85 585 160 HOH HOH . G 4 HOH A 86 586 12 HOH HOH . G 4 HOH A 87 587 96 HOH HOH . G 4 HOH A 88 588 85 HOH HOH . G 4 HOH A 89 589 86 HOH HOH . G 4 HOH A 90 590 84 HOH HOH . G 4 HOH A 91 591 48 HOH HOH . G 4 HOH A 92 592 145 HOH HOH . G 4 HOH A 93 593 133 HOH HOH . G 4 HOH A 94 594 10 HOH HOH . G 4 HOH A 95 595 11 HOH HOH . G 4 HOH A 96 596 130 HOH HOH . G 4 HOH A 97 597 66 HOH HOH . G 4 HOH A 98 598 56 HOH HOH . G 4 HOH A 99 599 115 HOH HOH . G 4 HOH A 100 600 26 HOH HOH . G 4 HOH A 101 601 68 HOH HOH . G 4 HOH A 102 602 100 HOH HOH . G 4 HOH A 103 603 15 HOH HOH . G 4 HOH A 104 604 135 HOH HOH . G 4 HOH A 105 605 97 HOH HOH . G 4 HOH A 106 606 107 HOH HOH . G 4 HOH A 107 607 144 HOH HOH . G 4 HOH A 108 608 25 HOH HOH . G 4 HOH A 109 609 16 HOH HOH . G 4 HOH A 110 610 20 HOH HOH . G 4 HOH A 111 611 67 HOH HOH . G 4 HOH A 112 612 80 HOH HOH . G 4 HOH A 113 613 77 HOH HOH . G 4 HOH A 114 614 122 HOH HOH . G 4 HOH A 115 615 33 HOH HOH . G 4 HOH A 116 616 155 HOH HOH . G 4 HOH A 117 617 94 HOH HOH . G 4 HOH A 118 618 121 HOH HOH . G 4 HOH A 119 619 104 HOH HOH . G 4 HOH A 120 620 22 HOH HOH . G 4 HOH A 121 621 101 HOH HOH . G 4 HOH A 122 622 90 HOH HOH . G 4 HOH A 123 623 152 HOH HOH . G 4 HOH A 124 624 105 HOH HOH . G 4 HOH A 125 625 44 HOH HOH . G 4 HOH A 126 626 124 HOH HOH . G 4 HOH A 127 627 126 HOH HOH . G 4 HOH A 128 628 32 HOH HOH . G 4 HOH A 129 629 70 HOH HOH . G 4 HOH A 130 630 60 HOH HOH . G 4 HOH A 131 631 103 HOH HOH . G 4 HOH A 132 632 35 HOH HOH . G 4 HOH A 133 633 7 HOH HOH . G 4 HOH A 134 634 36 HOH HOH . G 4 HOH A 135 635 95 HOH HOH . G 4 HOH A 136 636 76 HOH HOH . G 4 HOH A 137 637 54 HOH HOH . G 4 HOH A 138 638 119 HOH HOH . G 4 HOH A 139 639 106 HOH HOH . G 4 HOH A 140 640 64 HOH HOH . G 4 HOH A 141 641 51 HOH HOH . G 4 HOH A 142 642 78 HOH HOH . G 4 HOH A 143 643 128 HOH HOH . G 4 HOH A 144 644 79 HOH HOH . G 4 HOH A 145 645 92 HOH HOH . G 4 HOH A 146 646 98 HOH HOH . G 4 HOH A 147 647 89 HOH HOH . G 4 HOH A 148 648 17 HOH HOH . G 4 HOH A 149 649 108 HOH HOH . G 4 HOH A 150 650 102 HOH HOH . G 4 HOH A 151 651 159 HOH HOH . G 4 HOH A 152 652 140 HOH HOH . G 4 HOH A 153 653 151 HOH HOH . G 4 HOH A 154 654 53 HOH HOH . G 4 HOH A 155 655 149 HOH HOH . G 4 HOH A 156 656 142 HOH HOH . G 4 HOH A 157 657 81 HOH HOH . G 4 HOH A 158 658 162 HOH HOH . G 4 HOH A 159 659 109 HOH HOH . G 4 HOH A 160 660 110 HOH HOH . G 4 HOH A 161 661 52 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 MH5 . . . B 2 12.369 21.832 0.349 0.78 49.66 ? N1 MH5 401 A 1 HETATM 2 C C4 MH5 . . . B 2 12.484 24.606 2.658 0.78 43.23 ? C4 MH5 401 A 1 HETATM 3 C C5 MH5 . . . B 2 11.933 23.482 2.118 0.78 45.78 ? C5 MH5 401 A 1 HETATM 4 C C6 MH5 . . . B 2 12.622 22.196 1.732 0.78 48.1 ? C6 MH5 401 A 1 HETATM 5 C C7 MH5 . . . B 2 12.858 22.523 -0.767 0.78 46.66 ? C7 MH5 401 A 1 HETATM 6 C C8 MH5 . . . B 2 13.945 23.377 -0.634 0.78 45.97 ? C8 MH5 401 A 1 HETATM 7 C C10 MH5 . . . B 2 13.828 23.906 -2.972 0.78 44.61 ? C10 MH5 401 A 1 HETATM 8 C C13 MH5 . . . B 2 12.093 22.89 -4.465 0.78 47.61 ? C13 MH5 401 A 1 HETATM 9 C C1 MH5 . . . B 2 9.056 26.177 2.448 0.78 39.56 ? C1 MH5 401 A 1 HETATM 10 C C2 MH5 . . . B 2 10.279 25.321 2.495 0.78 42.57 ? C2 MH5 401 A 1 HETATM 11 C C3 MH5 . . . B 2 11.531 25.627 2.916 0.78 41.65 ? C3 MH5 401 A 1 HETATM 12 S S1 MH5 . . . B 2 10.235 23.685 1.93 0.78 46.38 ? S1 MH5 401 A 1 HETATM 13 C C9 MH5 . . . B 2 14.425 24.063 -1.736 0.78 45.07 ? C9 MH5 401 A 1 HETATM 14 C C11 MH5 . . . B 2 12.748 23.047 -3.118 0.78 43.67 ? C11 MH5 401 A 1 HETATM 15 C C12 MH5 . . . B 2 12.257 22.362 -2.013 0.78 43.3 ? C12 MH5 401 A 1 HETATM 16 O O1 MH5 . . . B 2 12.674 23.399 -5.459 0.78 45.01 ? O1 MH5 401 A 1 HETATM 17 O O2 MH5 . . . B 2 10.988 22.292 -4.514 0.78 51.32 -1 O2 MH5 401 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #