data_5R5T # _model_server_result.job_id x0YgO22gX9J1XHHgcVTx0Q _model_server_result.datetime_utc '2024-10-19 16:35:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5T # _exptl.entry_id 5R5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 183.274 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(5-methyl-1,3,4-thiadiazol-2-yl)piperidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5T _cell.length_a 77.46 _cell.length_b 77.46 _cell.length_c 71.72 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? # _chem_comp.formula 'C8 H13 N3 S' _chem_comp.formula_weight 183.274 _chem_comp.id RWS _chem_comp.mon_nstd_flag . _chem_comp.name 1-(5-methyl-1,3,4-thiadiazol-2-yl)piperidine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 5R5T _atom_sites.fract_transf_matrix[1][1] 0.01291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RWS A 1 2401 2401 RWS LIG . C 3 HOH A 1 2501 2202 HOH HOH . C 3 HOH A 2 2502 2201 HOH HOH . C 3 HOH A 3 2503 2204 HOH HOH . C 3 HOH A 4 2504 2203 HOH HOH . C 3 HOH A 5 2505 2221 HOH HOH . C 3 HOH A 6 2506 2236 HOH HOH . C 3 HOH A 7 2507 2232 HOH HOH . C 3 HOH A 8 2508 2210 HOH HOH . C 3 HOH A 9 2509 2211 HOH HOH . C 3 HOH A 10 2510 2271 HOH HOH . C 3 HOH A 11 2511 2214 HOH HOH . C 3 HOH A 12 2512 2266 HOH HOH . C 3 HOH A 13 2513 2254 HOH HOH . C 3 HOH A 14 2514 2226 HOH HOH . C 3 HOH A 15 2515 2206 HOH HOH . C 3 HOH A 16 2516 2274 HOH HOH . C 3 HOH A 17 2517 2217 HOH HOH . C 3 HOH A 18 2518 2220 HOH HOH . C 3 HOH A 19 2519 2269 HOH HOH . C 3 HOH A 20 2520 2268 HOH HOH . C 3 HOH A 21 2521 2290 HOH HOH . C 3 HOH A 22 2522 2228 HOH HOH . C 3 HOH A 23 2523 2235 HOH HOH . C 3 HOH A 24 2524 2239 HOH HOH . C 3 HOH A 25 2525 2279 HOH HOH . C 3 HOH A 26 2526 2231 HOH HOH . C 3 HOH A 27 2527 2209 HOH HOH . C 3 HOH A 28 2528 2252 HOH HOH . C 3 HOH A 29 2529 2212 HOH HOH . C 3 HOH A 30 2530 2255 HOH HOH . C 3 HOH A 31 2531 2242 HOH HOH . C 3 HOH A 32 2532 2285 HOH HOH . C 3 HOH A 33 2533 2251 HOH HOH . C 3 HOH A 34 2534 2207 HOH HOH . C 3 HOH A 35 2535 2215 HOH HOH . C 3 HOH A 36 2536 2348 HOH HOH . C 3 HOH A 37 2537 2322 HOH HOH . C 3 HOH A 38 2538 2225 HOH HOH . C 3 HOH A 39 2539 2216 HOH HOH . C 3 HOH A 40 2540 2224 HOH HOH . C 3 HOH A 41 2541 2243 HOH HOH . C 3 HOH A 42 2542 2310 HOH HOH . C 3 HOH A 43 2543 2234 HOH HOH . C 3 HOH A 44 2544 2229 HOH HOH . C 3 HOH A 45 2545 2256 HOH HOH . C 3 HOH A 46 2546 2244 HOH HOH . C 3 HOH A 47 2547 2299 HOH HOH . C 3 HOH A 48 2548 2240 HOH HOH . C 3 HOH A 49 2549 2297 HOH HOH . C 3 HOH A 50 2550 2272 HOH HOH . C 3 HOH A 51 2551 2250 HOH HOH . C 3 HOH A 52 2552 2213 HOH HOH . C 3 HOH A 53 2553 2263 HOH HOH . C 3 HOH A 54 2554 2227 HOH HOH . C 3 HOH A 55 2555 2257 HOH HOH . C 3 HOH A 56 2556 2222 HOH HOH . C 3 HOH A 57 2557 2278 HOH HOH . C 3 HOH A 58 2558 2218 HOH HOH . C 3 HOH A 59 2559 2258 HOH HOH . C 3 HOH A 60 2560 2247 HOH HOH . C 3 HOH A 61 2561 2302 HOH HOH . C 3 HOH A 62 2562 2245 HOH HOH . C 3 HOH A 63 2563 2261 HOH HOH . C 3 HOH A 64 2564 2292 HOH HOH . C 3 HOH A 65 2565 2291 HOH HOH . C 3 HOH A 66 2566 2276 HOH HOH . C 3 HOH A 67 2567 2273 HOH HOH . C 3 HOH A 68 2568 2308 HOH HOH . C 3 HOH A 69 2569 2249 HOH HOH . C 3 HOH A 70 2570 2264 HOH HOH . C 3 HOH A 71 2571 2284 HOH HOH . C 3 HOH A 72 2572 2280 HOH HOH . C 3 HOH A 73 2573 2270 HOH HOH . C 3 HOH A 74 2574 2288 HOH HOH . C 3 HOH A 75 2575 2260 HOH HOH . C 3 HOH A 76 2576 2275 HOH HOH . C 3 HOH A 77 2577 2262 HOH HOH . C 3 HOH A 78 2578 2248 HOH HOH . C 3 HOH A 79 2579 2333 HOH HOH . C 3 HOH A 80 2580 2259 HOH HOH . C 3 HOH A 81 2581 2237 HOH HOH . C 3 HOH A 82 2582 2265 HOH HOH . C 3 HOH A 83 2583 2205 HOH HOH . C 3 HOH A 84 2584 2241 HOH HOH . C 3 HOH A 85 2585 2233 HOH HOH . C 3 HOH A 86 2586 2283 HOH HOH . C 3 HOH A 87 2587 2267 HOH HOH . C 3 HOH A 88 2588 2331 HOH HOH . C 3 HOH A 89 2589 2246 HOH HOH . C 3 HOH A 90 2590 2282 HOH HOH . C 3 HOH A 91 2591 2315 HOH HOH . C 3 HOH A 92 2592 2351 HOH HOH . C 3 HOH A 93 2593 2277 HOH HOH . C 3 HOH A 94 2594 2286 HOH HOH . C 3 HOH A 95 2595 2332 HOH HOH . C 3 HOH A 96 2596 2300 HOH HOH . C 3 HOH A 97 2597 2328 HOH HOH . C 3 HOH A 98 2598 2314 HOH HOH . C 3 HOH A 99 2599 2309 HOH HOH . C 3 HOH A 100 2600 2219 HOH HOH . C 3 HOH A 101 2601 2296 HOH HOH . C 3 HOH A 102 2602 2298 HOH HOH . C 3 HOH A 103 2603 2337 HOH HOH . C 3 HOH A 104 2604 2304 HOH HOH . C 3 HOH A 105 2605 2312 HOH HOH . C 3 HOH A 106 2606 2323 HOH HOH . C 3 HOH A 107 2607 2306 HOH HOH . C 3 HOH A 108 2608 2325 HOH HOH . C 3 HOH A 109 2609 2318 HOH HOH . C 3 HOH A 110 2610 2289 HOH HOH . C 3 HOH A 111 2611 2334 HOH HOH . C 3 HOH A 112 2612 2326 HOH HOH . C 3 HOH A 113 2613 2294 HOH HOH . C 3 HOH A 114 2614 2208 HOH HOH . C 3 HOH A 115 2615 2324 HOH HOH . C 3 HOH A 116 2616 2303 HOH HOH . C 3 HOH A 117 2617 2253 HOH HOH . C 3 HOH A 118 2618 2287 HOH HOH . C 3 HOH A 119 2619 2319 HOH HOH . C 3 HOH A 120 2620 2305 HOH HOH . C 3 HOH A 121 2621 2346 HOH HOH . C 3 HOH A 122 2622 2335 HOH HOH . C 3 HOH A 123 2623 2339 HOH HOH . C 3 HOH A 124 2624 2317 HOH HOH . C 3 HOH A 125 2625 2301 HOH HOH . C 3 HOH A 126 2626 2293 HOH HOH . C 3 HOH A 127 2627 2316 HOH HOH . C 3 HOH A 128 2628 2307 HOH HOH . C 3 HOH A 129 2629 2320 HOH HOH . C 3 HOH A 130 2630 2327 HOH HOH . C 3 HOH A 131 2631 2311 HOH HOH . C 3 HOH A 132 2632 2330 HOH HOH . C 3 HOH A 133 2633 2281 HOH HOH . C 3 HOH A 134 2634 2321 HOH HOH . C 3 HOH A 135 2635 2338 HOH HOH . C 3 HOH A 136 2636 2340 HOH HOH . C 3 HOH A 137 2637 2352 HOH HOH . C 3 HOH A 138 2638 2344 HOH HOH . C 3 HOH A 139 2639 2230 HOH HOH . C 3 HOH A 140 2640 2345 HOH HOH . C 3 HOH A 141 2641 2355 HOH HOH . C 3 HOH A 142 2642 2329 HOH HOH . C 3 HOH A 143 2643 2336 HOH HOH . C 3 HOH A 144 2644 2342 HOH HOH . C 3 HOH A 145 2645 2313 HOH HOH . C 3 HOH A 146 2646 2368 HOH HOH . C 3 HOH A 147 2647 2343 HOH HOH . C 3 HOH A 148 2648 2349 HOH HOH . C 3 HOH A 149 2649 2370 HOH HOH . C 3 HOH A 150 2650 2347 HOH HOH . C 3 HOH A 151 2651 2295 HOH HOH . C 3 HOH A 152 2652 2365 HOH HOH . C 3 HOH A 153 2653 2359 HOH HOH . C 3 HOH A 154 2654 2360 HOH HOH . C 3 HOH A 155 2655 2341 HOH HOH . C 3 HOH A 156 2656 2361 HOH HOH . C 3 HOH A 157 2657 2354 HOH HOH . C 3 HOH A 158 2658 2364 HOH HOH . C 3 HOH A 159 2659 2367 HOH HOH . C 3 HOH A 160 2660 2372 HOH HOH . C 3 HOH A 161 2661 2353 HOH HOH . C 3 HOH A 162 2662 2358 HOH HOH . C 3 HOH A 163 2663 2356 HOH HOH . C 3 HOH A 164 2664 2362 HOH HOH . C 3 HOH A 165 2665 2366 HOH HOH . C 3 HOH A 166 2666 2357 HOH HOH . C 3 HOH A 167 2667 2369 HOH HOH . C 3 HOH A 168 2668 2371 HOH HOH . C 3 HOH A 169 2669 2373 HOH HOH . C 3 HOH A 170 2670 2374 HOH HOH . C 3 HOH A 171 2671 2375 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 RWS . . . B 2 10.345 -4.42 10.261 0.46 27.98 ? N1 RWS 2401 A 1 HETATM 2 C C4 RWS . . . B 2 13.652 -2.521 13.23 0.46 35.42 ? C4 RWS 2401 A 1 HETATM 3 C C5 RWS . . . B 2 14.699 -2.419 12.152 0.46 34.57 ? C5 RWS 2401 A 1 HETATM 4 C C6 RWS . . . B 2 14.083 -2.111 10.816 0.46 33.87 ? C6 RWS 2401 A 1 HETATM 5 C C7 RWS . . . B 2 13.097 -3.212 10.447 0.46 31.68 ? C7 RWS 2401 A 1 HETATM 6 C C RWS . . . B 2 7.148 -4.803 12.025 0.46 34.57 ? C RWS 2401 A 1 HETATM 7 C C1 RWS . . . B 2 8.528 -4.518 11.611 0.46 31.51 ? C1 RWS 2401 A 1 HETATM 8 S S RWS . . . B 2 9.62 -3.625 12.639 0.46 35.22 ? S RWS 2401 A 1 HETATM 9 C C2 RWS . . . B 2 10.819 -3.755 11.309 0.46 30.95 ? C2 RWS 2401 A 1 HETATM 10 N N RWS . . . B 2 9.092 -4.849 10.436 0.46 27.74 ? N RWS 2401 A 1 HETATM 11 N N2 RWS . . . B 2 12.068 -3.25 11.49 0.46 35.01 ? N2 RWS 2401 A 1 HETATM 12 C C3 RWS . . . B 2 12.265 -2.378 12.642 0.46 33.58 ? C3 RWS 2401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #