data_5R5V # _model_server_result.job_id j0HRpc9uC3UgPg4LdLMkEA _model_server_result.datetime_utc '2024-11-26 10:15:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 5r5v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":2401}' # _entry.id 5R5V # _exptl.entry_id 5R5V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.26 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(4-fluorophenyl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 5R5V _cell.length_a 76.691 _cell.length_b 76.691 _cell.length_c 71.676 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5R5V _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 1984 1_555 A SG CYS 38 A CYS 2014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 160 A CYS 2136 1_555 A SG CYS 173 A CYS 2149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? # _chem_comp.formula 'C12 H16 F N O' _chem_comp.formula_weight 209.26 _chem_comp.id AXS _chem_comp.mon_nstd_flag . _chem_comp.name 1-(4-fluorophenyl)-~{N}-[[(2~{R})-oxolan-2-yl]methyl]methanamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 AXS sing 70 n n C11 C10 AXS sing 71 n n C12 O1 AXS sing 72 n n C10 C9 AXS sing 73 n n O1 C9 AXS sing 74 n n C9 C8 AXS sing 75 n n C8 N1 AXS sing 76 n n N1 C7 AXS sing 77 n n C7 C6 AXS sing 78 n n C6 C1 AXS doub 79 n y C6 C5 AXS sing 80 n y C1 C2 AXS sing 81 n y C5 C4 AXS doub 82 n y C2 C3 AXS doub 83 n y C4 C3 AXS sing 84 n y C3 F1 AXS sing 85 n n N1 H1 AXS sing 86 n n C4 H3 AXS sing 87 n n C5 H4 AXS sing 88 n n C7 H5 AXS sing 89 n n C7 H6 AXS sing 90 n n C8 H7 AXS sing 91 n n C8 H8 AXS sing 92 n n C10 H9 AXS sing 93 n n C10 H10 AXS sing 94 n n C1 H11 AXS sing 95 n n C2 H12 AXS sing 96 n n C9 H13 AXS sing 97 n n C11 H14 AXS sing 98 n n C11 H15 AXS sing 99 n n C12 H16 AXS sing 100 n n C12 H17 AXS sing 101 n n # _atom_sites.entry_id 5R5V _atom_sites.fract_transf_matrix[1][1] 0.013039 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AXS A 1 2401 2401 AXS LIG . C 3 HOH A 1 2501 2236 HOH HOH . C 3 HOH A 2 2502 2201 HOH HOH . C 3 HOH A 3 2503 2202 HOH HOH . C 3 HOH A 4 2504 2204 HOH HOH . C 3 HOH A 5 2505 2252 HOH HOH . C 3 HOH A 6 2506 2227 HOH HOH . C 3 HOH A 7 2507 2214 HOH HOH . C 3 HOH A 8 2508 2210 HOH HOH . C 3 HOH A 9 2509 2216 HOH HOH . C 3 HOH A 10 2510 2268 HOH HOH . C 3 HOH A 11 2511 2205 HOH HOH . C 3 HOH A 12 2512 2237 HOH HOH . C 3 HOH A 13 2513 2239 HOH HOH . C 3 HOH A 14 2514 2203 HOH HOH . C 3 HOH A 15 2515 2213 HOH HOH . C 3 HOH A 16 2516 2336 HOH HOH . C 3 HOH A 17 2517 2258 HOH HOH . C 3 HOH A 18 2518 2234 HOH HOH . C 3 HOH A 19 2519 2284 HOH HOH . C 3 HOH A 20 2520 2221 HOH HOH . C 3 HOH A 21 2521 2302 HOH HOH . C 3 HOH A 22 2522 2263 HOH HOH . C 3 HOH A 23 2523 2220 HOH HOH . C 3 HOH A 24 2524 2222 HOH HOH . C 3 HOH A 25 2525 2212 HOH HOH . C 3 HOH A 26 2526 2279 HOH HOH . C 3 HOH A 27 2527 2253 HOH HOH . C 3 HOH A 28 2528 2224 HOH HOH . C 3 HOH A 29 2529 2208 HOH HOH . C 3 HOH A 30 2530 2254 HOH HOH . C 3 HOH A 31 2531 2217 HOH HOH . C 3 HOH A 32 2532 2259 HOH HOH . C 3 HOH A 33 2533 2270 HOH HOH . C 3 HOH A 34 2534 2256 HOH HOH . C 3 HOH A 35 2535 2287 HOH HOH . C 3 HOH A 36 2536 2242 HOH HOH . C 3 HOH A 37 2537 2218 HOH HOH . C 3 HOH A 38 2538 2243 HOH HOH . C 3 HOH A 39 2539 2215 HOH HOH . C 3 HOH A 40 2540 2257 HOH HOH . C 3 HOH A 41 2541 2310 HOH HOH . C 3 HOH A 42 2542 2228 HOH HOH . C 3 HOH A 43 2543 2225 HOH HOH . C 3 HOH A 44 2544 2223 HOH HOH . C 3 HOH A 45 2545 2251 HOH HOH . C 3 HOH A 46 2546 2244 HOH HOH . C 3 HOH A 47 2547 2314 HOH HOH . C 3 HOH A 48 2548 2229 HOH HOH . C 3 HOH A 49 2549 2231 HOH HOH . C 3 HOH A 50 2550 2346 HOH HOH . C 3 HOH A 51 2551 2301 HOH HOH . C 3 HOH A 52 2552 2297 HOH HOH . C 3 HOH A 53 2553 2280 HOH HOH . C 3 HOH A 54 2554 2299 HOH HOH . C 3 HOH A 55 2555 2249 HOH HOH . C 3 HOH A 56 2556 2328 HOH HOH . C 3 HOH A 57 2557 2232 HOH HOH . C 3 HOH A 58 2558 2233 HOH HOH . C 3 HOH A 59 2559 2240 HOH HOH . C 3 HOH A 60 2560 2209 HOH HOH . C 3 HOH A 61 2561 2309 HOH HOH . C 3 HOH A 62 2562 2261 HOH HOH . C 3 HOH A 63 2563 2255 HOH HOH . C 3 HOH A 64 2564 2207 HOH HOH . C 3 HOH A 65 2565 2206 HOH HOH . C 3 HOH A 66 2566 2288 HOH HOH . C 3 HOH A 67 2567 2245 HOH HOH . C 3 HOH A 68 2568 2267 HOH HOH . C 3 HOH A 69 2569 2260 HOH HOH . C 3 HOH A 70 2570 2306 HOH HOH . C 3 HOH A 71 2571 2298 HOH HOH . C 3 HOH A 72 2572 2248 HOH HOH . C 3 HOH A 73 2573 2300 HOH HOH . C 3 HOH A 74 2574 2265 HOH HOH . C 3 HOH A 75 2575 2283 HOH HOH . C 3 HOH A 76 2576 2264 HOH HOH . C 3 HOH A 77 2577 2291 HOH HOH . C 3 HOH A 78 2578 2226 HOH HOH . C 3 HOH A 79 2579 2211 HOH HOH . C 3 HOH A 80 2580 2337 HOH HOH . C 3 HOH A 81 2581 2275 HOH HOH . C 3 HOH A 82 2582 2307 HOH HOH . C 3 HOH A 83 2583 2247 HOH HOH . C 3 HOH A 84 2584 2286 HOH HOH . C 3 HOH A 85 2585 2276 HOH HOH . C 3 HOH A 86 2586 2318 HOH HOH . C 3 HOH A 87 2587 2305 HOH HOH . C 3 HOH A 88 2588 2277 HOH HOH . C 3 HOH A 89 2589 2304 HOH HOH . C 3 HOH A 90 2590 2273 HOH HOH . C 3 HOH A 91 2591 2282 HOH HOH . C 3 HOH A 92 2592 2235 HOH HOH . C 3 HOH A 93 2593 2334 HOH HOH . C 3 HOH A 94 2594 2294 HOH HOH . C 3 HOH A 95 2595 2285 HOH HOH . C 3 HOH A 96 2596 2323 HOH HOH . C 3 HOH A 97 2597 2303 HOH HOH . C 3 HOH A 98 2598 2312 HOH HOH . C 3 HOH A 99 2599 2366 HOH HOH . C 3 HOH A 100 2600 2292 HOH HOH . C 3 HOH A 101 2601 2315 HOH HOH . C 3 HOH A 102 2602 2329 HOH HOH . C 3 HOH A 103 2603 2331 HOH HOH . C 3 HOH A 104 2604 2319 HOH HOH . C 3 HOH A 105 2605 2281 HOH HOH . C 3 HOH A 106 2606 2338 HOH HOH . C 3 HOH A 107 2607 2332 HOH HOH . C 3 HOH A 108 2608 2325 HOH HOH . C 3 HOH A 109 2609 2296 HOH HOH . C 3 HOH A 110 2610 2344 HOH HOH . C 3 HOH A 111 2611 2271 HOH HOH . C 3 HOH A 112 2612 2340 HOH HOH . C 3 HOH A 113 2613 2320 HOH HOH . C 3 HOH A 114 2614 2350 HOH HOH . C 3 HOH A 115 2615 2250 HOH HOH . C 3 HOH A 116 2616 2335 HOH HOH . C 3 HOH A 117 2617 2241 HOH HOH . C 3 HOH A 118 2618 2317 HOH HOH . C 3 HOH A 119 2619 2324 HOH HOH . C 3 HOH A 120 2620 2365 HOH HOH . C 3 HOH A 121 2621 2368 HOH HOH . C 3 HOH A 122 2622 2327 HOH HOH . C 3 HOH A 123 2623 2219 HOH HOH . C 3 HOH A 124 2624 2289 HOH HOH . C 3 HOH A 125 2625 2308 HOH HOH . C 3 HOH A 126 2626 2363 HOH HOH . C 3 HOH A 127 2627 2313 HOH HOH . C 3 HOH A 128 2628 2353 HOH HOH . C 3 HOH A 129 2629 2330 HOH HOH . C 3 HOH A 130 2630 2362 HOH HOH . C 3 HOH A 131 2631 2351 HOH HOH . C 3 HOH A 132 2632 2348 HOH HOH . C 3 HOH A 133 2633 2311 HOH HOH . C 3 HOH A 134 2634 2370 HOH HOH . C 3 HOH A 135 2635 2295 HOH HOH . C 3 HOH A 136 2636 2339 HOH HOH . C 3 HOH A 137 2637 2269 HOH HOH . C 3 HOH A 138 2638 2266 HOH HOH . C 3 HOH A 139 2639 2230 HOH HOH . C 3 HOH A 140 2640 2278 HOH HOH . C 3 HOH A 141 2641 2321 HOH HOH . C 3 HOH A 142 2642 2342 HOH HOH . C 3 HOH A 143 2643 2316 HOH HOH . C 3 HOH A 144 2644 2326 HOH HOH . C 3 HOH A 145 2645 2355 HOH HOH . C 3 HOH A 146 2646 2356 HOH HOH . C 3 HOH A 147 2647 2349 HOH HOH . C 3 HOH A 148 2648 2359 HOH HOH . C 3 HOH A 149 2649 2274 HOH HOH . C 3 HOH A 150 2650 2246 HOH HOH . C 3 HOH A 151 2651 2352 HOH HOH . C 3 HOH A 152 2652 2322 HOH HOH . C 3 HOH A 153 2653 2347 HOH HOH . C 3 HOH A 154 2654 2358 HOH HOH . C 3 HOH A 155 2655 2361 HOH HOH . C 3 HOH A 156 2656 2293 HOH HOH . C 3 HOH A 157 2657 2341 HOH HOH . C 3 HOH A 158 2658 2345 HOH HOH . C 3 HOH A 159 2659 2360 HOH HOH . C 3 HOH A 160 2660 2238 HOH HOH . C 3 HOH A 161 2661 2369 HOH HOH . C 3 HOH A 162 2662 2364 HOH HOH . C 3 HOH A 163 2663 2367 HOH HOH . C 3 HOH A 164 2664 2372 HOH HOH . C 3 HOH A 165 2665 2357 HOH HOH . C 3 HOH A 166 2666 2343 HOH HOH . C 3 HOH A 167 2667 2371 HOH HOH . C 3 HOH A 168 2668 2333 HOH HOH . C 3 HOH A 169 2669 2290 HOH HOH . C 3 HOH A 170 2670 2354 HOH HOH . C 3 HOH A 171 2671 2373 HOH HOH . C 3 HOH A 172 2672 2375 HOH HOH . C 3 HOH A 173 2673 2272 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 AXS . . . B 2 13.269 -19.114 -15.657 0.78 33.8 ? N1 AXS 2401 A 1 HETATM 2 C C4 AXS . . . B 2 13.619 -17.093 -11.835 0.78 32.13 ? C4 AXS 2401 A 1 HETATM 3 C C5 AXS . . . B 2 13.793 -17.987 -12.887 0.78 31.36 ? C5 AXS 2401 A 1 HETATM 4 C C6 AXS . . . B 2 12.765 -18.85 -13.244 0.78 32.42 ? C6 AXS 2401 A 1 HETATM 5 C C7 AXS . . . B 2 12.96 -19.814 -14.401 0.78 32.07 ? C7 AXS 2401 A 1 HETATM 6 C C8 AXS . . . B 2 12.734 -19.929 -16.772 0.78 38.34 ? C8 AXS 2401 A 1 HETATM 7 C C10 AXS . . . B 2 13.228 -20.495 -19.241 0.78 38.01 ? C10 AXS 2401 A 1 HETATM 8 C C1 AXS . . . B 2 11.555 -18.848 -12.552 0.78 30.17 ? C1 AXS 2401 A 1 HETATM 9 C C2 AXS . . . B 2 11.34 -17.975 -11.511 0.78 30.24 ? C2 AXS 2401 A 1 HETATM 10 C C3 AXS . . . B 2 12.387 -17.09 -11.166 0.78 30.92 ? C3 AXS 2401 A 1 HETATM 11 C C9 AXS . . . B 2 13.252 -19.414 -18.126 0.78 37.82 ? C9 AXS 2401 A 1 HETATM 12 C C11 AXS . . . B 2 11.827 -20.399 -19.846 0.78 37.64 ? C11 AXS 2401 A 1 HETATM 13 C C12 AXS . . . B 2 11.321 -19.074 -19.336 0.78 37.75 ? C12 AXS 2401 A 1 HETATM 14 O O1 AXS . . . B 2 12.314 -18.474 -18.532 0.78 39.56 ? O1 AXS 2401 A 1 HETATM 15 F F1 AXS . . . B 2 12.207 -16.208 -10.23 0.78 29.74 ? F1 AXS 2401 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #